Wall clock time and date at job start Mon Mar 30 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34706 * 117.00437 * 2 1 4 4 O 1.21477 * 119.99835 * 0.02562 * 3 2 1 5 5 C 1.47733 * 120.00382 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.12483 * 179.97438 * 5 3 2 7 7 C 1.37950 * 119.95806 * 180.02562 * 6 5 3 8 8 C 1.50696 * 119.89129 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47177 * 89.99552 * 8 7 6 10 10 C 1.52997 * 109.47328 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47160 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00065 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99795 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99978 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00318 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47098 * 89.99896 * 15 13 11 17 17 H 1.48501 * 109.47373 * 210.00319 * 15 13 11 18 18 H 1.48506 * 109.47151 * 330.00412 * 15 13 11 19 19 C 1.38297 * 120.21204 * 359.97438 * 7 6 5 20 20 C 1.38810 * 120.25118 * 0.02562 * 19 7 6 21 21 O 1.35919 * 119.97943 * 180.02562 * 20 19 7 22 22 C 1.42907 * 116.99783 * 180.02562 * 21 20 19 23 23 C 1.38475 * 120.03820 * 359.97438 * 20 19 7 24 24 H 1.09000 * 109.47080 * 59.99607 * 1 2 3 25 25 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46494 * 299.99555 * 1 2 3 27 27 H 1.07999 * 120.01612 * 359.97438 * 6 5 3 28 28 H 1.09001 * 109.47180 * 209.99557 * 8 7 6 29 29 H 1.08999 * 109.47244 * 330.00159 * 8 7 6 30 30 H 1.09001 * 109.47070 * 300.00073 * 9 8 7 31 31 H 1.09003 * 109.46979 * 60.00018 * 9 8 7 32 32 H 1.09001 * 109.46993 * 299.99983 * 10 9 8 33 33 H 1.08995 * 109.47079 * 59.99769 * 10 9 8 34 34 H 0.97001 * 120.00091 * 179.97438 * 14 13 11 35 35 H 1.08002 * 119.86907 * 179.97438 * 19 7 6 36 36 H 1.08991 * 109.47009 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46488 * 299.99446 * 22 21 20 38 38 H 1.08997 * 109.46910 * 59.99536 * 22 21 20 39 39 H 1.08005 * 120.10642 * 180.27760 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.1758 2.5205 -0.0011 7 6 5.5536 2.5886 -0.0022 8 6 6.2391 3.9307 -0.0022 9 6 6.4722 4.3843 1.4404 10 6 7.1676 5.7471 1.4404 11 6 7.3977 6.1936 2.8612 12 1 7.0801 5.5678 3.6821 13 6 8.0146 7.4007 3.1131 14 7 8.2159 7.7902 4.3531 15 14 8.5659 8.4822 1.6934 16 1 7.4652 9.4058 1.3183 17 1 9.7553 9.2707 2.1044 18 1 8.9154 7.6300 0.5285 19 6 6.3077 1.4294 -0.0022 20 6 5.6839 0.1893 -0.0016 21 8 6.4305 -0.9465 -0.0011 22 6 5.7228 -2.1880 -0.0012 23 6 4.3015 0.1088 -0.0006 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 3.5898 3.4277 -0.0015 28 1 7.1966 3.8496 -0.5167 29 1 5.6114 4.6593 -0.5152 30 1 5.5147 4.4654 1.9549 31 1 7.0999 3.6557 1.9535 32 1 8.1250 5.6664 0.9257 33 1 6.5396 6.4755 0.9274 34 1 8.6503 8.6392 4.5303 35 1 7.3861 1.4892 -0.0034 36 1 6.4356 -3.0125 -0.0003 37 1 5.0962 -2.2489 0.8887 38 1 5.0967 -2.2493 -0.8913 39 1 3.8150 -0.8555 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:54 Heat of formation + Delta-G solvation = -134.378869 kcal Electronic energy + Delta-G solvation = -20723.696109 eV Core-core repulsion = 17402.532000 eV Total energy + Delta-G solvation = -3321.164109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83783 -40.85351 -38.85861 -37.55523 -36.32386 -34.53329 -32.67952 -31.54461 -29.09483 -28.69483 -28.00166 -25.33954 -25.03032 -22.52500 -22.06553 -21.49161 -19.24670 -18.69321 -18.57894 -17.47712 -17.32024 -17.12204 -17.04855 -16.64398 -16.33522 -15.61933 -15.04309 -14.84970 -14.62175 -14.53029 -14.36200 -14.13551 -13.44487 -13.27061 -13.12592 -13.09058 -12.82008 -12.64260 -12.43934 -12.36472 -12.02168 -11.87985 -11.75031 -11.72475 -11.45526 -11.35875 -11.29815 -10.74219 -9.95261 -9.32711 -8.27437 -6.31791 -0.46322 0.27156 1.38490 1.38726 1.40513 1.52891 1.56936 2.28891 2.38827 2.62685 3.08182 3.47064 3.66405 3.99568 4.08543 4.13399 4.24508 4.26791 4.31124 4.34670 4.43259 4.44043 4.49628 4.60168 4.69152 4.79010 4.81064 4.96343 5.03991 5.08943 5.12428 5.15203 5.20626 5.46561 5.52345 5.58636 5.68362 5.70666 6.31197 6.33958 6.56269 6.76771 7.32787 8.89764 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.003628 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.305248 B = 7714.924646 C = 8712.363684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.532 6.532 5 C -0.100 4.100 6 C -0.099 4.099 7 C -0.047 4.047 8 C -0.077 4.077 9 C -0.089 4.089 10 C -0.013 4.013 11 C -0.535 4.535 12 H 0.026 0.974 13 C -0.001 4.001 14 N -0.955 5.955 15 Si 0.955 3.045 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.240 1.240 19 C -0.117 4.117 20 C 0.116 3.884 21 O -0.327 6.327 22 C 0.014 3.986 23 C -0.152 4.152 24 H 0.064 0.936 25 H 0.139 0.861 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 -22.592 -14.620 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.423 6.423 5 C -0.102 4.102 6 C -0.117 4.117 7 C -0.047 4.047 8 C -0.114 4.114 9 C -0.127 4.127 10 C -0.050 4.050 11 C -0.573 4.573 12 H 0.045 0.955 13 C -0.197 4.197 14 N -0.596 5.596 15 Si 0.778 3.222 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.163 1.163 19 C -0.136 4.136 20 C 0.071 3.929 21 O -0.241 6.241 22 C -0.080 4.080 23 C -0.171 4.171 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.799 -22.238 -14.520 28.670 hybrid contribution -0.252 0.821 0.305 0.911 sum -11.051 -21.417 -14.215 27.980 Atomic orbital electron populations 1.23641 0.74021 1.06149 1.02693 1.86516 1.25423 1.31206 1.83766 1.21294 0.89185 0.81679 0.71984 1.90838 1.67321 1.37112 1.47039 1.18854 0.88782 0.94661 1.07857 1.21135 0.94337 0.96948 0.99318 1.19705 0.92508 0.95526 0.96997 1.20707 1.01274 0.92097 0.97299 1.21312 0.99465 0.96774 0.95169 1.19566 0.96399 0.94575 0.94481 1.21563 1.38245 1.04293 0.93184 0.95518 1.26109 0.95494 0.99458 0.98641 1.70089 1.45052 1.22902 1.21587 0.85586 0.78082 0.78683 0.79860 1.19277 1.21111 1.16298 1.20804 1.01670 0.89145 1.01984 1.18871 0.89646 0.87217 0.97164 1.86105 1.35890 1.13510 1.88614 1.23428 0.99415 0.82645 1.02522 1.21588 0.92376 0.99374 1.03738 0.91704 0.84251 0.92079 0.85118 0.89104 0.89901 0.93972 0.93214 0.95480 0.96062 0.92559 0.83533 0.85997 0.91694 0.91208 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.35 -7.04 9.82 -56.16 -0.55 -7.59 16 3 C 0.51 13.43 7.90 70.33 0.56 13.98 16 4 O -0.53 -16.98 16.13 19.91 0.32 -16.66 16 5 C -0.10 -2.59 5.87 -20.11 -0.12 -2.71 16 6 C -0.10 -2.81 9.24 22.54 0.21 -2.61 16 7 C -0.05 -1.31 5.13 -19.92 -0.10 -1.41 16 8 C -0.08 -2.28 5.34 29.85 0.16 -2.12 16 9 C -0.09 -3.51 5.14 30.59 0.16 -3.35 16 10 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 11 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 12 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 13 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 14 N -0.96 -61.46 13.96 21.45 0.30 -61.17 16 15 Si 0.96 44.75 27.47 68.60 1.88 46.63 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 19 C -0.12 -2.99 9.63 22.42 0.22 -2.77 16 20 C 0.12 2.68 6.68 22.46 0.15 2.83 16 21 O -0.33 -6.66 10.50 -92.64 -0.97 -7.63 16 22 C 0.01 0.16 9.81 113.37 1.11 1.27 16 23 C -0.15 -3.27 8.60 22.64 0.19 -3.07 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.13 3.89 7.65 -2.91 -0.02 3.87 16 28 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 33 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 38 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 39 H 0.16 2.60 5.84 -2.91 -0.02 2.58 16 Total: -1.00 -74.50 334.63 6.52 -67.98 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.98 Total: 8.37 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.56 Total: -29.94 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.20 Total: -31.87 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -74.50 6.52 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.400 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds