Wall clock time and date at job start Tue Mar 31 2020 00:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 120.00205 * 2 1 4 4 H 1.48499 * 109.46851 * 274.86511 * 3 2 1 5 5 H 1.48496 * 109.46907 * 34.86205 * 3 2 1 6 6 H 1.48498 * 109.46859 * 154.86434 * 3 2 1 7 7 C 1.40028 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 351.89650 * 7 2 1 9 9 C 1.41317 * 120.00282 * 171.89452 * 7 2 1 10 10 C 1.40588 * 119.78005 * 155.81822 * 9 7 2 11 11 C 1.38352 * 119.14346 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.68273 * 0.02562 * 11 10 9 13 13 C 1.39758 * 119.48979 * 359.97438 * 12 11 10 14 14 N 1.38822 * 119.58546 * 179.97438 * 13 12 11 15 15 C 1.48560 * 111.00126 * 145.09072 * 14 13 12 16 16 C 1.54376 * 104.59672 * 159.04525 * 15 14 13 17 17 H 1.08998 * 110.32640 * 95.14747 * 16 15 14 18 18 C 1.53007 * 110.32425 * 217.25834 * 16 15 14 19 19 O 1.42903 * 109.46838 * 293.54140 * 18 16 15 20 20 C 1.54269 * 105.06149 * 336.14959 * 16 15 14 21 21 H 1.08992 * 110.32294 * 241.10762 * 20 16 15 22 22 C 1.52998 * 110.32274 * 118.89271 * 20 16 15 23 23 O 1.42895 * 109.47217 * 175.00042 * 22 20 16 24 24 C 1.48554 * 111.00644 * 260.51817 * 14 13 12 25 25 N 1.31985 * 120.83361 * 0.26777 * 13 12 11 26 26 H 0.97004 * 119.99953 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.43326 * 0.03092 * 10 9 7 28 28 H 1.07995 * 120.65695 * 180.02562 * 11 10 9 29 29 H 1.08000 * 120.25494 * 179.97438 * 12 11 10 30 30 H 1.09006 * 110.40798 * 40.27033 * 15 14 13 31 31 H 1.08990 * 110.51698 * 277.87955 * 15 14 13 32 32 H 1.09006 * 109.46955 * 173.54891 * 18 16 15 33 33 H 1.08993 * 109.47031 * 53.54487 * 18 16 15 34 34 H 0.96695 * 114.00047 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.47286 * 295.00767 * 22 20 16 36 36 H 1.09004 * 109.46905 * 54.99906 * 22 20 16 37 37 H 0.96698 * 114.00413 * 180.02562 * 23 22 20 38 38 H 1.08997 * 110.41085 * 319.73536 * 24 14 13 39 39 H 1.08996 * 110.41613 * 82.05801 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3862 2.1058 -1.3950 5 1 1.4942 2.6208 0.8003 6 1 3.5867 1.4126 0.5947 7 6 2.0076 -1.2127 -0.0005 8 1 1.4756 -2.1434 0.1309 9 6 3.4102 -1.2188 -0.1731 10 6 4.1690 -2.2972 0.3145 11 6 5.5412 -2.2898 0.1379 12 6 6.1222 -1.2143 -0.5161 13 6 5.3140 -0.1718 -0.9781 14 7 5.8938 0.9063 -1.6327 15 6 5.0034 1.4190 -2.7058 16 6 5.4874 2.8635 -2.9559 17 1 6.1940 2.8878 -3.7855 18 6 4.2970 3.7801 -3.2457 19 8 3.6972 3.4037 -4.4869 20 6 6.1822 3.2861 -1.6449 21 1 5.6752 4.1463 -1.2081 22 6 7.6546 3.6108 -1.9046 23 8 8.2508 4.1104 -0.7059 24 6 6.0595 2.0612 -0.7132 25 7 4.0072 -0.1967 -0.7947 26 1 -0.4850 0.8401 0.0004 27 1 3.6870 -3.1211 0.8196 28 1 6.1476 -3.1058 0.5022 29 1 7.1910 -1.1823 -0.6674 30 1 3.9659 1.4182 -2.3716 31 1 5.1111 0.8202 -3.6101 32 1 4.6402 4.8130 -3.3065 33 1 3.5636 3.6874 -2.4448 34 1 2.9341 3.9434 -4.7346 35 1 8.1757 2.7071 -2.2204 36 1 7.7275 4.3648 -2.6884 37 1 9.1862 4.3380 -0.7971 38 1 5.1874 2.1609 -0.0671 39 1 6.9632 1.9443 -0.1151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261791639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:53 Heat of formation + Delta-G solvation = -61.969218 kcal Electronic energy + Delta-G solvation = -22571.244694 eV Core-core repulsion = 19285.513255 eV Total energy + Delta-G solvation = -3285.731440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96336 -38.21173 -36.70467 -36.06989 -33.71796 -32.62531 -31.12959 -29.57098 -29.10953 -25.92539 -25.62851 -24.31434 -21.93925 -21.16212 -20.22024 -19.74535 -17.68238 -17.44345 -17.01326 -16.54190 -15.75447 -15.20851 -14.97877 -14.67119 -14.40616 -14.23774 -13.64473 -13.39795 -13.06631 -12.87644 -12.75949 -12.48931 -11.74877 -11.65553 -11.44306 -11.25861 -11.20262 -10.92483 -10.84202 -10.74695 -10.42404 -10.34247 -10.15906 -9.95374 -9.89000 -9.26926 -8.68988 -8.25438 -7.86109 -7.54708 -6.90680 -4.68226 2.37597 2.61249 3.26760 3.34295 3.46778 3.90941 4.21033 4.38754 4.45818 4.48605 4.75714 4.87097 5.14276 5.24876 5.35469 5.41549 5.44045 5.60281 5.61784 5.67881 5.88375 5.91305 6.03415 6.05845 6.21869 6.31284 6.37964 6.42951 6.54237 6.65615 6.70394 7.06931 7.13586 7.30526 7.48210 7.57353 7.66050 7.66988 7.95354 8.19820 8.58755 8.61034 9.47658 10.04866 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.007939 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.343675 B = 3526.074555 C = 4522.837164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.087 3.913 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.323 1.323 6 H -0.252 1.252 7 C -0.422 4.422 8 H 0.096 0.904 9 C 0.260 3.740 10 C -0.255 4.255 11 C -0.050 4.050 12 C -0.270 4.270 13 C 0.314 3.686 14 N -0.464 5.464 15 C 0.040 3.960 16 C -0.086 4.086 17 H 0.086 0.914 18 C 0.081 3.919 19 O -0.568 6.568 20 C -0.086 4.086 21 H 0.082 0.918 22 C 0.089 3.911 23 O -0.573 6.573 24 C 0.043 3.957 25 N -0.581 5.581 26 H 0.286 0.714 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.377 0.623 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.377 0.623 38 H 0.057 0.943 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 9.160 -4.334 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.255 1.255 6 H -0.178 1.178 7 C -0.454 4.454 8 H 0.114 0.886 9 C 0.134 3.866 10 C -0.277 4.277 11 C -0.075 4.075 12 C -0.295 4.295 13 C 0.081 3.919 14 N -0.186 5.186 15 C -0.087 4.087 16 C -0.105 4.105 17 H 0.104 0.896 18 C 0.003 3.997 19 O -0.373 6.373 20 C -0.105 4.105 21 H 0.101 0.899 22 C 0.012 3.988 23 O -0.378 6.378 24 C -0.083 4.083 25 N -0.303 5.303 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.224 0.776 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.223 0.777 38 H 0.075 0.925 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.258 9.105 -4.582 14.461 hybrid contribution 0.053 0.666 0.326 0.744 sum 10.310 9.772 -4.257 14.829 Atomic orbital electron populations 1.69633 1.08380 1.30575 1.34603 1.26239 0.94794 1.02906 0.89448 0.85272 0.78746 0.77111 0.78515 1.19627 1.25517 1.17820 1.19414 0.89177 0.95610 1.41187 0.88565 1.18393 0.93629 0.86897 0.87647 1.21734 0.93587 1.02800 1.09613 1.20939 0.94704 0.96243 0.95582 1.20787 0.98889 0.97375 1.12416 1.19642 0.88478 0.91449 0.92287 1.63388 1.41846 1.04362 1.09000 1.23183 0.97914 0.92646 0.94959 1.21861 0.96065 0.95519 0.97052 0.89577 1.22317 0.94729 0.96386 0.86245 1.86483 1.49446 1.61953 1.39448 1.21851 0.94625 0.98532 0.95463 0.89942 1.22186 0.93213 0.97436 0.85998 1.86482 1.28713 1.86888 1.35759 1.23187 1.02378 0.88048 0.94732 1.67263 1.10805 1.29370 1.22819 0.90427 0.87313 0.87575 0.87456 0.90022 0.90351 0.93717 0.93215 0.77623 0.92446 0.93918 0.77694 0.92461 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.97 13.92 55.55 0.77 -21.20 16 2 C 0.09 2.37 5.52 -17.34 -0.10 2.27 16 3 Si 0.97 23.52 24.37 -169.99 -4.14 19.38 16 4 H -0.27 -6.38 5.35 56.52 0.30 -6.08 16 5 H -0.32 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.25 -6.32 4.64 56.52 0.26 -6.06 16 7 C -0.42 -11.63 9.69 -37.74 -0.37 -11.99 16 8 H 0.10 2.71 8.06 -52.48 -0.42 2.28 16 9 C 0.26 6.78 6.01 -85.00 -0.51 6.27 16 10 C -0.26 -5.96 9.83 -38.65 -0.38 -6.34 16 11 C -0.05 -1.05 10.15 -39.39 -0.40 -1.45 16 12 C -0.27 -5.82 10.04 -38.87 -0.39 -6.21 16 13 C 0.31 7.19 5.56 -155.31 -0.86 6.33 16 14 N -0.46 -9.27 5.36 -168.76 -0.90 -10.17 16 15 C 0.04 0.78 5.71 -2.18 -0.01 0.77 16 16 C -0.09 -1.31 2.99 -89.23 -0.27 -1.58 16 17 H 0.09 1.21 7.71 -51.93 -0.40 0.81 16 18 C 0.08 1.15 6.14 37.16 0.23 1.38 16 19 O -0.57 -8.13 13.49 -35.23 -0.48 -8.60 16 20 C -0.09 -1.27 2.98 -89.23 -0.27 -1.53 16 21 H 0.08 1.18 7.71 -51.93 -0.40 0.78 16 22 C 0.09 1.07 6.14 37.16 0.23 1.30 16 23 O -0.57 -6.81 13.32 -35.23 -0.47 -7.27 16 24 C 0.04 0.79 5.92 -2.18 -0.01 0.78 16 25 N -0.58 -14.66 3.93 -10.33 -0.04 -14.70 16 26 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 27 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 30 H 0.08 1.84 4.36 -51.93 -0.23 1.61 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.79 7.42 -51.93 -0.39 0.40 16 34 H 0.38 3.61 9.12 45.56 0.42 4.02 16 35 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 2.58 9.12 45.56 0.42 3.00 16 38 H 0.06 1.20 5.55 -51.93 -0.29 0.91 16 39 H 0.09 1.55 7.62 -51.93 -0.40 1.16 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -31.39 309.86 -7.72 -39.11 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.02 Total: 8.80 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.11 Total: -10.02 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.17 Total: -46.07 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.94 Total: -15.88 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.39 -7.72 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261791639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.859 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds