Wall clock time and date at job start Tue Mar 31 2020 00:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 120.00205 * 2 1 4 4 H 1.48499 * 109.46851 * 274.86511 * 3 2 1 5 5 H 1.48496 * 109.46907 * 34.86205 * 3 2 1 6 6 H 1.48498 * 109.46859 * 154.86434 * 3 2 1 7 7 C 1.40028 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 351.89650 * 7 2 1 9 9 C 1.41317 * 120.00282 * 171.89452 * 7 2 1 10 10 C 1.40588 * 119.78005 * 155.81822 * 9 7 2 11 11 C 1.38352 * 119.14346 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.68273 * 0.02562 * 11 10 9 13 13 C 1.39758 * 119.48979 * 359.97438 * 12 11 10 14 14 N 1.38822 * 119.58546 * 179.97438 * 13 12 11 15 15 C 1.48560 * 111.00126 * 145.09072 * 14 13 12 16 16 C 1.54376 * 104.59672 * 159.04525 * 15 14 13 17 17 H 1.08998 * 110.32640 * 95.14747 * 16 15 14 18 18 C 1.53007 * 110.32425 * 217.25834 * 16 15 14 19 19 O 1.42903 * 109.46838 * 293.54140 * 18 16 15 20 20 C 1.54269 * 105.06149 * 336.14959 * 16 15 14 21 21 H 1.08992 * 110.32294 * 241.10762 * 20 16 15 22 22 C 1.52998 * 110.32274 * 118.89271 * 20 16 15 23 23 O 1.42895 * 109.47217 * 175.00042 * 22 20 16 24 24 C 1.48554 * 111.00644 * 260.51817 * 14 13 12 25 25 N 1.31985 * 120.83361 * 0.26777 * 13 12 11 26 26 H 0.97004 * 119.99953 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.43326 * 0.03092 * 10 9 7 28 28 H 1.07995 * 120.65695 * 180.02562 * 11 10 9 29 29 H 1.08000 * 120.25494 * 179.97438 * 12 11 10 30 30 H 1.09006 * 110.40798 * 40.27033 * 15 14 13 31 31 H 1.08990 * 110.51698 * 277.87955 * 15 14 13 32 32 H 1.09006 * 109.46955 * 173.54891 * 18 16 15 33 33 H 1.08993 * 109.47031 * 53.54487 * 18 16 15 34 34 H 0.96695 * 114.00047 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.47286 * 295.00767 * 22 20 16 36 36 H 1.09004 * 109.46905 * 54.99906 * 22 20 16 37 37 H 0.96698 * 114.00413 * 180.02562 * 23 22 20 38 38 H 1.08997 * 110.41085 * 319.73536 * 24 14 13 39 39 H 1.08996 * 110.41613 * 82.05801 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3862 2.1058 -1.3950 5 1 1.4942 2.6208 0.8003 6 1 3.5867 1.4126 0.5947 7 6 2.0076 -1.2127 -0.0005 8 1 1.4756 -2.1434 0.1309 9 6 3.4102 -1.2188 -0.1731 10 6 4.1690 -2.2972 0.3145 11 6 5.5412 -2.2898 0.1379 12 6 6.1222 -1.2143 -0.5161 13 6 5.3140 -0.1718 -0.9781 14 7 5.8938 0.9063 -1.6327 15 6 5.0034 1.4190 -2.7058 16 6 5.4874 2.8635 -2.9559 17 1 6.1940 2.8878 -3.7855 18 6 4.2970 3.7801 -3.2457 19 8 3.6972 3.4037 -4.4869 20 6 6.1822 3.2861 -1.6449 21 1 5.6752 4.1463 -1.2081 22 6 7.6546 3.6108 -1.9046 23 8 8.2508 4.1104 -0.7059 24 6 6.0595 2.0612 -0.7132 25 7 4.0072 -0.1967 -0.7947 26 1 -0.4850 0.8401 0.0004 27 1 3.6870 -3.1211 0.8196 28 1 6.1476 -3.1058 0.5022 29 1 7.1910 -1.1823 -0.6674 30 1 3.9659 1.4182 -2.3716 31 1 5.1111 0.8202 -3.6101 32 1 4.6402 4.8130 -3.3065 33 1 3.5636 3.6874 -2.4448 34 1 2.9341 3.9434 -4.7346 35 1 8.1757 2.7071 -2.2204 36 1 7.7275 4.3648 -2.6884 37 1 9.1862 4.3380 -0.7971 38 1 5.1874 2.1609 -0.0671 39 1 6.9632 1.9443 -0.1151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261791639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:52 Heat of formation + Delta-G solvation = -88.114746 kcal Electronic energy + Delta-G solvation = -22572.378450 eV Core-core repulsion = 19285.513255 eV Total energy + Delta-G solvation = -3286.865195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50583 -39.77756 -37.67949 -37.27726 -35.61074 -34.10405 -32.99814 -30.93121 -30.72386 -27.76718 -26.85835 -25.75341 -23.53990 -22.77886 -21.80579 -21.01678 -19.64892 -18.48864 -18.26653 -17.91285 -17.14767 -16.69644 -16.53027 -16.49452 -15.81757 -15.48161 -15.01093 -14.85374 -14.81993 -14.50388 -14.43719 -13.87324 -13.40504 -13.14234 -12.91951 -12.78712 -12.62460 -12.51649 -12.41370 -12.25809 -12.10334 -12.05987 -11.65657 -11.27361 -10.88910 -10.81377 -10.45317 -10.05120 -9.73039 -9.34833 -8.92540 -6.73117 0.52718 0.77883 1.28540 1.39157 1.49719 2.24755 2.49960 2.81974 3.01340 3.34538 3.44025 3.65922 3.75470 3.99037 4.11837 4.16582 4.25658 4.37784 4.43071 4.46179 4.49666 4.59090 4.60672 4.68241 4.74325 4.75773 4.88559 4.93339 4.99610 5.04380 5.18875 5.22370 5.46719 5.62374 5.66515 5.88243 5.95201 6.24957 6.59297 6.69211 6.81886 6.97998 7.57732 8.07939 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.007939 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.343675 B = 3526.074555 C = 4522.837164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.056 3.944 3 Si 1.020 2.980 4 H -0.267 1.267 5 H -0.318 1.318 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.243 3.757 10 C -0.268 4.268 11 C -0.040 4.040 12 C -0.257 4.257 13 C 0.293 3.707 14 N -0.456 5.456 15 C 0.037 3.963 16 C -0.078 4.078 17 H 0.107 0.893 18 C 0.082 3.918 19 O -0.587 6.587 20 C -0.080 4.080 21 H 0.088 0.912 22 C 0.097 3.903 23 O -0.592 6.592 24 C 0.042 3.958 25 N -0.594 5.594 26 H 0.293 0.707 27 H 0.119 0.881 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.396 0.604 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.026 0.974 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.037 10.527 -5.104 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.161 4.161 3 Si 0.852 3.148 4 H -0.193 1.193 5 H -0.250 1.250 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.116 3.884 10 C -0.290 4.290 11 C -0.064 4.064 12 C -0.281 4.281 13 C 0.061 3.939 14 N -0.178 5.178 15 C -0.090 4.090 16 C -0.097 4.097 17 H 0.125 0.875 18 C 0.004 3.996 19 O -0.395 6.395 20 C -0.100 4.100 21 H 0.106 0.894 22 C 0.020 3.980 23 O -0.401 6.401 24 C -0.084 4.084 25 N -0.316 5.316 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.044 0.956 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.648 10.489 -5.365 18.029 hybrid contribution -0.761 0.141 0.540 0.944 sum 12.886 10.630 -4.825 17.388 Atomic orbital electron populations 1.69646 1.08997 1.31441 1.36912 1.26759 0.95335 1.04738 0.89293 0.84543 0.76975 0.74839 0.78404 1.19328 1.24979 1.19278 1.19396 0.90375 0.95076 1.44373 0.90914 1.18551 0.93472 0.88312 0.88074 1.21955 0.94908 1.02394 1.09752 1.21404 0.93892 0.97097 0.93999 1.21290 1.00319 0.96373 1.10091 1.20192 0.88050 0.93025 0.92588 1.63474 1.40947 1.04343 1.09056 1.23151 0.96112 0.95566 0.94198 1.21850 0.96975 0.92817 0.98036 0.87461 1.22311 0.93751 0.98015 0.85521 1.86429 1.50625 1.63164 1.39279 1.21856 0.97178 0.96854 0.94073 0.89396 1.22069 0.90844 0.98437 0.86684 1.86423 1.30784 1.86919 1.35933 1.23221 1.01063 0.89135 0.94995 1.67201 1.12295 1.29302 1.22754 0.89697 0.86314 0.82998 0.84479 0.93523 0.91075 0.89957 0.95627 0.75402 0.92495 0.90979 0.75094 0.95596 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.01 13.92 21.84 0.30 -47.71 16 2 C 0.06 3.15 5.52 85.29 0.47 3.62 16 3 Si 1.02 50.50 24.37 68.60 1.67 52.18 16 4 H -0.27 -12.90 5.35 99.48 0.53 -12.37 16 5 H -0.32 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.27 -13.62 4.64 99.48 0.46 -13.16 16 7 C -0.46 -26.60 9.69 23.46 0.23 -26.38 16 8 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 9 C 0.24 12.94 6.01 40.19 0.24 13.18 16 10 C -0.27 -12.38 9.83 22.87 0.22 -12.15 16 11 C -0.04 -1.54 10.15 22.39 0.23 -1.31 16 12 C -0.26 -10.32 10.04 22.73 0.23 -10.09 16 13 C 0.29 13.12 5.56 133.40 0.74 13.87 16 14 N -0.46 -17.56 5.36 -687.84 -3.68 -21.24 16 15 C 0.04 1.42 5.71 86.45 0.49 1.91 16 16 C -0.08 -2.19 2.99 -9.89 -0.03 -2.22 16 17 H 0.11 2.60 7.71 -2.39 -0.02 2.58 16 18 C 0.08 2.14 6.14 71.98 0.44 2.58 16 19 O -0.59 -15.71 13.49 -148.98 -2.01 -17.72 16 20 C -0.08 -2.16 2.98 -9.89 -0.03 -2.19 16 21 H 0.09 2.29 7.71 -2.39 -0.02 2.27 16 22 C 0.10 1.93 6.14 71.98 0.44 2.37 16 23 O -0.59 -11.82 13.32 -148.98 -1.98 -13.81 16 24 C 0.04 1.49 5.92 86.45 0.51 2.00 16 25 N -0.59 -30.30 3.93 -186.59 -0.73 -31.03 16 26 H 0.29 15.14 8.29 -92.71 -0.77 14.38 16 27 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 28 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.05 2.13 4.36 -2.38 -0.01 2.11 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.03 0.79 7.42 -2.39 -0.02 0.77 16 34 H 0.40 6.87 9.12 -74.06 -0.68 6.20 16 35 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.40 3.88 9.12 -74.06 -0.68 3.20 16 38 H 0.03 1.07 5.55 -2.39 -0.01 1.06 16 39 H 0.09 3.11 7.62 -2.39 -0.02 3.09 16 Total: -1.00 -70.42 309.86 -2.93 -73.35 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.69 Total: 20.78 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.19 Total: -14.80 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.11 Total: -99.98 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -3.99 Total: -31.52 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.67 Total: 52.18 kcal Total: -70.42 -2.93 -73.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261791639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.765 kcal (2) G-P(sol) polarization free energy of solvation -70.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds