Wall clock time and date at job start Tue Mar 31 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47333 * 300.00282 * 3 2 1 6 6 H 1.48503 * 109.46939 * 59.99941 * 3 2 1 7 7 C 1.37881 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.38277 * 119.93090 * 90.00117 * 10 9 7 12 12 C 1.38111 * 120.07159 * 180.02562 * 11 10 9 13 13 C 1.38873 * 119.92760 * 359.97438 * 12 11 10 14 14 N 1.39932 * 120.06722 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99976 * 35.08715 * 14 13 12 16 16 O 1.21289 * 120.00193 * 355.36945 * 15 14 13 17 17 C 1.50697 * 119.99871 * 175.37280 * 15 14 13 18 18 C 1.53008 * 109.47168 * 179.97438 * 17 15 14 19 19 H 1.08992 * 109.46941 * 305.00098 * 18 17 15 20 20 O 1.42901 * 109.47046 * 64.99854 * 18 17 15 21 21 C 1.53001 * 109.46872 * 185.00081 * 18 17 15 22 22 N 1.46906 * 109.46584 * 180.02562 * 21 18 17 23 23 C 1.38864 * 119.86002 * 0.27566 * 13 12 11 24 24 C 1.38117 * 119.92715 * 359.47142 * 23 13 12 25 25 H 0.96994 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47504 * 59.99774 * 9 7 2 27 27 H 1.09003 * 109.47319 * 300.00156 * 9 7 2 28 28 H 1.08006 * 119.96132 * 359.97327 * 11 10 9 29 29 H 1.07996 * 120.03699 * 179.97438 * 12 11 10 30 30 H 0.96996 * 119.99600 * 215.08445 * 14 13 12 31 31 H 1.08996 * 109.47589 * 60.00053 * 17 15 14 32 32 H 1.08996 * 109.47250 * 300.00004 * 17 15 14 33 33 H 0.96702 * 113.99784 * 60.00393 * 20 18 17 34 34 H 1.08997 * 109.46982 * 299.99519 * 21 18 17 35 35 H 1.08992 * 109.47390 * 60.00399 * 21 18 17 36 36 H 1.00899 * 110.99711 * 179.97438 * 22 21 18 37 37 H 1.00905 * 111.00014 * 303.94969 * 22 21 18 38 38 H 1.07999 * 120.03514 * 179.72525 * 23 13 12 39 39 H 1.08004 * 119.96073 * 180.25356 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6788 -4.1691 1.1978 12 6 3.5766 -5.2185 1.2012 13 6 4.0288 -5.7473 -0.0006 14 7 4.9381 -6.8109 -0.0006 15 6 4.8660 -7.7591 0.9544 16 8 4.0684 -7.6470 1.8613 17 6 5.7765 -8.9584 0.8957 18 6 5.4928 -9.8731 2.0890 19 1 5.5841 -9.3030 3.0134 20 8 4.1682 -10.3984 1.9822 21 6 6.4993 -11.0255 2.0989 22 7 6.2265 -11.9039 3.2443 23 6 3.5807 -5.2150 -1.2024 24 6 2.6787 -4.1690 -1.1989 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.3270 -3.7570 2.1322 29 1 3.9267 -5.6273 2.1375 30 1 5.6202 -6.8657 -0.6880 31 1 6.8148 -8.6286 0.9300 32 1 5.5992 -9.5042 -0.0311 33 1 4.0146 -10.9183 1.1814 34 1 6.4079 -11.5956 1.1744 35 1 7.5096 -10.6248 2.1804 36 1 6.8781 -12.6737 3.2728 37 1 6.2413 -11.3850 4.1096 38 1 3.9339 -5.6212 -2.1386 39 1 2.3267 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263197989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:14 Heat of formation + Delta-G solvation = -70.192679 kcal Electronic energy + Delta-G solvation = -20610.110577 eV Core-core repulsion = 17324.022541 eV Total energy + Delta-G solvation = -3286.088036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41693 -38.55793 -37.47050 -34.82469 -34.12348 -33.03570 -31.60753 -30.31093 -30.15751 -27.01461 -25.70179 -23.27075 -22.35475 -21.98494 -20.71056 -19.97581 -17.74227 -17.03130 -16.83691 -16.30101 -16.12980 -15.90445 -15.16360 -14.90124 -14.49076 -14.29377 -14.13766 -13.74706 -13.46451 -12.97908 -12.76432 -12.74483 -12.55103 -12.20324 -11.91055 -11.35461 -11.27251 -11.22637 -10.82623 -10.58342 -10.38154 -10.30514 -9.97510 -9.77518 -9.37068 -9.22582 -9.09318 -8.41076 -8.26102 -7.37158 -6.02033 -4.05981 1.89299 2.09005 2.70805 3.06078 3.30202 3.37737 3.42647 3.93387 4.25741 4.34719 4.40472 4.51898 4.59082 4.73518 4.90447 5.00358 5.10386 5.18380 5.31933 5.44994 5.61515 5.71445 5.97653 6.08569 6.15142 6.22648 6.63473 6.67563 6.81000 6.94384 6.97482 7.18932 7.23603 7.51962 7.54592 7.55924 7.74018 7.89320 7.93943 8.22389 8.34640 8.99627 9.57609 11.07620 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.002801 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.011631 B = 9995.092341 C =10034.660707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.042 4.042 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.102 3.898 14 N -0.672 5.672 15 C 0.507 3.493 16 O -0.503 6.503 17 C -0.175 4.175 18 C 0.126 3.874 19 H 0.103 0.897 20 O -0.531 6.531 21 C 0.028 3.972 22 N -0.842 5.842 23 C -0.144 4.144 24 C -0.110 4.110 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.403 0.597 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.367 0.633 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.341 0.659 37 H 0.344 0.656 38 H 0.113 0.887 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.664 -21.035 -0.287 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.042 4.042 11 C -0.128 4.128 12 C -0.136 4.136 13 C 0.010 3.990 14 N -0.317 5.317 15 C 0.293 3.707 16 O -0.377 6.377 17 C -0.216 4.216 18 C 0.065 3.935 19 H 0.120 0.880 20 O -0.334 6.334 21 C -0.103 4.103 22 N -0.372 5.372 23 C -0.164 4.164 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.238 0.762 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.212 0.788 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.170 -20.712 0.616 25.103 hybrid contribution 2.011 0.962 -0.757 2.354 sum 16.181 -19.751 -0.141 25.533 Atomic orbital electron populations 1.69969 1.06023 1.26676 1.50644 1.25026 0.94887 0.99262 0.95275 0.86483 0.80108 0.83538 0.77605 1.19707 1.20969 1.20952 1.21103 0.93059 0.89868 1.50745 0.92436 1.18361 0.92593 0.89609 0.98418 1.20715 0.96393 0.95246 0.91875 1.21024 0.97581 0.95677 0.98517 1.21116 0.99298 0.96278 0.96957 1.17532 0.96187 0.90972 0.94349 1.43407 1.33501 1.23830 1.30988 1.20496 0.84505 0.83453 0.82236 1.90777 1.36920 1.76782 1.33181 1.22443 1.00831 0.96275 1.02013 1.21605 0.83035 0.91318 0.97531 0.87954 1.86774 1.28588 1.71656 1.46398 1.22538 0.97098 0.95125 0.95534 1.58512 1.59059 1.13752 1.05871 1.20742 1.00330 0.99807 0.95502 1.20881 0.97449 0.95965 0.98531 0.92909 0.95305 0.95281 0.86111 0.85474 0.76211 0.88074 0.88349 0.78758 0.90663 0.94686 0.84683 0.84316 0.86909 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.40 9.09 -34.44 -0.31 -14.72 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 10 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 11 C -0.11 -2.30 9.69 -39.61 -0.38 -2.68 16 12 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 13 C 0.10 1.69 6.30 -83.69 -0.53 1.16 16 14 N -0.67 -8.15 5.34 -9.86 -0.05 -8.20 16 15 C 0.51 6.30 7.55 -10.99 -0.08 6.22 16 16 O -0.50 -8.67 12.86 -8.88 -0.11 -8.79 16 17 C -0.17 -1.23 5.38 -27.88 -0.15 -1.38 16 18 C 0.13 1.07 2.72 -26.73 -0.07 1.00 16 19 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 20 O -0.53 -6.01 12.44 -49.66 -0.62 -6.62 16 21 C 0.03 0.17 6.45 -3.82 -0.02 0.14 16 22 N -0.84 -5.59 9.49 -10.37 -0.10 -5.69 16 23 C -0.14 -2.37 9.97 -39.39 -0.39 -2.76 16 24 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 29 H 0.13 2.41 6.23 -52.49 -0.33 2.08 16 30 H 0.40 3.31 8.82 -40.82 -0.36 2.95 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.37 2.82 9.05 45.56 0.41 3.23 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.34 1.58 9.08 -39.29 -0.36 1.22 16 37 H 0.34 2.20 8.99 -39.29 -0.35 1.85 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -35.39 334.51 -8.31 -43.71 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.74 Total: 6.81 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.45 Total: -16.97 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.59 Total: -39.83 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.73 Total: -15.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.39 -8.31 -43.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263197989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.485 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds