Wall clock time and date at job start Tue Mar 31 2020 00:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47333 * 300.00282 * 3 2 1 6 6 H 1.48503 * 109.46939 * 59.99941 * 3 2 1 7 7 C 1.37881 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.38277 * 119.93090 * 90.00117 * 10 9 7 12 12 C 1.38111 * 120.07159 * 180.02562 * 11 10 9 13 13 C 1.38873 * 119.92760 * 359.97438 * 12 11 10 14 14 N 1.39932 * 120.06722 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99976 * 35.08715 * 14 13 12 16 16 O 1.21289 * 120.00193 * 355.36945 * 15 14 13 17 17 C 1.50697 * 119.99871 * 175.37280 * 15 14 13 18 18 C 1.53008 * 109.47168 * 179.97438 * 17 15 14 19 19 H 1.08992 * 109.46941 * 305.00098 * 18 17 15 20 20 O 1.42901 * 109.47046 * 64.99854 * 18 17 15 21 21 C 1.53001 * 109.46872 * 185.00081 * 18 17 15 22 22 N 1.46906 * 109.46584 * 180.02562 * 21 18 17 23 23 C 1.38864 * 119.86002 * 0.27566 * 13 12 11 24 24 C 1.38117 * 119.92715 * 359.47142 * 23 13 12 25 25 H 0.96994 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47504 * 59.99774 * 9 7 2 27 27 H 1.09003 * 109.47319 * 300.00156 * 9 7 2 28 28 H 1.08006 * 119.96132 * 359.97327 * 11 10 9 29 29 H 1.07996 * 120.03699 * 179.97438 * 12 11 10 30 30 H 0.96996 * 119.99600 * 215.08445 * 14 13 12 31 31 H 1.08996 * 109.47589 * 60.00053 * 17 15 14 32 32 H 1.08996 * 109.47250 * 300.00004 * 17 15 14 33 33 H 0.96702 * 113.99784 * 60.00393 * 20 18 17 34 34 H 1.08997 * 109.46982 * 299.99519 * 21 18 17 35 35 H 1.08992 * 109.47390 * 60.00399 * 21 18 17 36 36 H 1.00899 * 110.99711 * 179.97438 * 22 21 18 37 37 H 1.00905 * 111.00014 * 303.94969 * 22 21 18 38 38 H 1.07999 * 120.03514 * 179.72525 * 23 13 12 39 39 H 1.08004 * 119.96073 * 180.25356 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6788 -4.1691 1.1978 12 6 3.5766 -5.2185 1.2012 13 6 4.0288 -5.7473 -0.0006 14 7 4.9381 -6.8109 -0.0006 15 6 4.8660 -7.7591 0.9544 16 8 4.0684 -7.6470 1.8613 17 6 5.7765 -8.9584 0.8957 18 6 5.4928 -9.8731 2.0890 19 1 5.5841 -9.3030 3.0134 20 8 4.1682 -10.3984 1.9822 21 6 6.4993 -11.0255 2.0989 22 7 6.2265 -11.9039 3.2443 23 6 3.5807 -5.2150 -1.2024 24 6 2.6787 -4.1690 -1.1989 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.3270 -3.7570 2.1322 29 1 3.9267 -5.6273 2.1375 30 1 5.6202 -6.8657 -0.6880 31 1 6.8148 -8.6286 0.9300 32 1 5.5992 -9.5042 -0.0311 33 1 4.0146 -10.9183 1.1814 34 1 6.4079 -11.5956 1.1744 35 1 7.5096 -10.6248 2.1804 36 1 6.8781 -12.6737 3.2728 37 1 6.2413 -11.3850 4.1096 38 1 3.9339 -5.6212 -2.1386 39 1 2.3267 -3.7573 -2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263197989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:13 Heat of formation + Delta-G solvation = -98.573715 kcal Electronic energy + Delta-G solvation = -20611.341271 eV Core-core repulsion = 17324.022541 eV Total energy + Delta-G solvation = -3287.318730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52515 -39.78307 -38.37573 -36.20661 -34.97679 -34.68304 -32.71372 -31.79214 -31.55274 -28.57681 -26.68080 -24.99355 -23.82538 -22.78249 -21.99796 -21.22405 -18.83452 -18.50656 -17.99862 -17.55194 -17.03606 -16.73706 -16.54287 -16.02172 -15.92955 -15.43743 -15.22307 -14.79129 -14.55497 -14.43229 -14.29805 -13.99834 -13.66011 -13.33638 -13.25493 -13.08566 -12.69420 -12.63908 -12.45942 -12.03963 -11.83800 -11.64055 -11.53233 -11.05875 -10.97112 -10.66094 -10.60871 -9.76491 -9.52668 -8.87323 -8.18950 -6.33961 0.45638 0.56847 1.38999 1.39756 1.53365 1.68942 2.10215 2.39617 2.99911 3.10040 3.40005 3.62666 3.75040 4.01163 4.06614 4.15804 4.18940 4.37810 4.43513 4.51560 4.61489 4.65006 4.66700 4.76695 4.81154 5.11823 5.14473 5.31796 5.33800 5.43132 5.51062 5.61504 5.75093 6.07615 6.12482 6.22866 6.25693 6.54533 6.59061 6.78931 7.01211 7.27523 7.34534 8.89333 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.002801 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.011631 B = 9995.092341 C =10034.660707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.076 4.076 11 C -0.124 4.124 12 C -0.126 4.126 13 C 0.118 3.882 14 N -0.658 5.658 15 C 0.502 3.498 16 O -0.557 6.557 17 C -0.158 4.158 18 C 0.122 3.878 19 H 0.074 0.926 20 O -0.565 6.565 21 C 0.037 3.963 22 N -0.860 5.860 23 C -0.127 4.127 24 C -0.115 4.115 25 H 0.265 0.735 26 H 0.007 0.993 27 H -0.003 1.003 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.428 0.572 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.379 0.621 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.351 0.649 37 H 0.342 0.658 38 H 0.161 0.839 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.014 -22.555 -2.136 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.143 4.143 12 C -0.146 4.146 13 C 0.024 3.976 14 N -0.306 5.306 15 C 0.291 3.709 16 O -0.434 6.434 17 C -0.198 4.198 18 C 0.061 3.939 19 H 0.092 0.908 20 O -0.371 6.371 21 C -0.094 4.094 22 N -0.391 5.391 23 C -0.147 4.147 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.124 0.876 29 H 0.142 0.858 30 H 0.267 0.733 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.573 -22.270 -1.270 28.397 hybrid contribution 0.984 1.291 -0.152 1.630 sum 18.556 -20.979 -1.422 28.045 Atomic orbital electron populations 1.70097 1.07742 1.27907 1.51426 1.25983 0.95810 1.03272 0.94620 0.85344 0.78906 0.78524 0.77957 1.18811 1.19899 1.20368 1.21403 0.93089 0.91126 1.50746 0.92641 1.18096 0.92896 0.91312 0.95729 1.20401 0.97745 0.95700 0.93788 1.20931 0.98817 0.96895 0.97635 1.21124 0.99349 0.95904 0.98247 1.17635 0.95544 0.91024 0.93378 1.43377 1.33076 1.22291 1.31810 1.21557 0.84212 0.84307 0.80827 1.90775 1.39364 1.77969 1.35272 1.22447 1.01119 0.93428 1.02832 1.21657 0.82786 0.92336 0.97081 0.90834 1.86732 1.30490 1.72258 1.47633 1.22469 0.96950 0.94186 0.95842 1.58527 1.59908 1.14494 1.06176 1.21067 0.98349 0.97963 0.97325 1.20997 0.98103 0.96853 0.97431 0.92565 0.97469 0.98478 0.87565 0.85793 0.73282 0.84419 0.84775 0.77262 0.89035 0.92698 0.83481 0.84583 0.82106 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.53 -30.81 9.09 25.60 0.23 -30.58 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.08 -3.53 5.07 -19.85 -0.10 -3.63 16 11 C -0.12 -5.47 9.69 22.25 0.22 -5.26 16 12 C -0.13 -4.83 8.70 22.39 0.19 -4.64 16 13 C 0.12 3.66 6.30 38.15 0.24 3.90 16 14 N -0.66 -13.49 5.34 -303.51 -1.62 -15.11 16 15 C 0.50 11.12 7.55 87.66 0.66 11.79 16 16 O -0.56 -18.96 12.86 10.74 0.14 -18.82 16 17 C -0.16 -1.55 5.38 29.85 0.16 -1.39 16 18 C 0.12 1.80 2.72 30.60 0.08 1.89 16 19 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 20 O -0.57 -12.15 12.44 -135.19 -1.68 -13.83 16 21 C 0.04 0.31 6.45 86.30 0.56 0.87 16 22 N -0.86 -9.91 9.49 -186.72 -1.77 -11.68 16 23 C -0.13 -3.81 9.97 22.39 0.22 -3.59 16 24 C -0.12 -4.46 9.69 22.25 0.22 -4.25 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 27 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 28 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.12 4.82 6.23 -2.91 -0.02 4.80 16 30 H 0.43 4.68 8.82 -92.71 -0.82 3.86 16 31 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.38 5.15 9.05 -74.06 -0.67 4.48 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.35 2.56 9.08 -89.69 -0.81 1.75 16 37 H 0.34 4.10 8.99 -89.69 -0.81 3.29 16 38 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -81.94 334.51 -1.33 -83.27 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -2.00 Total: 17.32 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.29 Total: -31.06 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.11 Total: -83.90 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.54 Total: -32.65 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -81.94 -1.33 -83.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263197989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.302 kcal (2) G-P(sol) polarization free energy of solvation -81.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds