Wall clock time and date at job start Tue Mar 31 2020 00:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.08999 * 111.00564 * 153.57779 * 12 11 10 14 14 N 1.46505 * 111.00361 * 277.42908 * 12 11 10 15 15 C 1.34769 * 119.99789 * 198.65299 * 14 12 11 16 16 O 1.21282 * 120.00337 * 359.97438 * 15 14 12 17 17 C 1.50709 * 120.00056 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.50695 * 109.46966 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.78890 * 89.71749 * 19 18 17 21 21 C 1.41383 * 106.84256 * 179.88961 * 20 19 18 22 22 C 1.34511 * 106.83935 * 0.36996 * 21 20 19 23 23 O 1.34304 * 125.79123 * 270.02383 * 19 18 17 24 24 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 25 25 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 27 27 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 28 28 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 29 29 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 30 30 H 0.97002 * 120.00176 * 18.64700 * 14 12 11 31 31 H 1.09003 * 109.47002 * 299.99929 * 17 15 14 32 32 H 1.09003 * 109.46899 * 59.99768 * 17 15 14 33 33 H 1.08996 * 109.46946 * 300.00225 * 18 17 15 34 34 H 1.08995 * 109.46891 * 59.99945 * 18 17 15 35 35 H 1.08002 * 126.58161 * 0.02562 * 20 19 18 36 36 H 1.07995 * 126.58301 * 180.16651 * 21 20 19 37 37 H 1.08003 * 125.79299 * 179.75554 * 22 21 20 38 38 H 1.09002 * 110.36696 * 85.26297 * 24 9 7 39 39 H 1.08995 * 110.36608 * 323.05133 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.9875 -5.6870 -0.2800 14 7 0.8605 -4.5765 -2.0759 15 6 1.6903 -5.3620 -2.7906 16 8 2.4317 -6.1359 -2.2229 17 6 1.6968 -5.2788 -4.2954 18 6 2.7214 -6.2670 -4.8564 19 6 2.7284 -6.1833 -6.3610 20 6 3.4980 -5.3641 -7.0997 21 6 3.1837 -5.6179 -8.4546 22 6 2.2349 -6.5713 -8.4625 23 8 1.9630 -6.9100 -7.1916 24 6 1.9335 -3.7312 -0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5607 -2.0564 -0.8839 27 1 -0.5599 -2.0893 0.9002 28 1 -1.2974 -4.2573 -0.6785 29 1 -0.6304 -4.4236 0.9788 30 1 0.2677 -3.9574 -2.5300 31 1 0.7063 -5.5260 -4.6772 32 1 1.9625 -4.2672 -4.6021 33 1 3.7118 -6.0195 -4.4745 34 1 2.4562 -7.2787 -4.5496 35 1 4.2194 -4.6508 -6.7291 36 1 3.6193 -5.1362 -9.3175 37 1 1.7703 -6.9928 -9.3416 38 1 2.1668 -4.0420 1.0178 39 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:04 Heat of formation + Delta-G solvation = -2.800403 kcal Electronic energy + Delta-G solvation = -21184.183238 eV Core-core repulsion = 17901.017550 eV Total energy + Delta-G solvation = -3283.165687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.67138 -39.60319 -37.28658 -34.09058 -33.70705 -32.89117 -31.79252 -29.39368 -28.82746 -27.19053 -24.86236 -24.09174 -21.86733 -20.83550 -20.28343 -20.05901 -19.69473 -17.63935 -17.04629 -16.53004 -16.15128 -15.72662 -15.48537 -14.65172 -14.51385 -13.99241 -13.83662 -13.46444 -13.13549 -12.94040 -12.75996 -12.47493 -12.23523 -12.09484 -11.89895 -11.82401 -11.14070 -10.97210 -10.89559 -10.69103 -10.37148 -10.14393 -10.04883 -9.98579 -9.68741 -9.57030 -8.73552 -8.56782 -8.52536 -6.82941 -5.73273 -3.05555 1.59567 2.49050 2.84973 2.91642 3.38903 3.44670 3.46317 3.55954 4.49292 4.55188 4.84339 4.87094 4.93497 5.06664 5.16015 5.31911 5.44085 5.47074 5.53658 5.63849 5.69933 5.77116 5.82568 5.86043 5.90618 6.04869 6.19915 6.36503 6.38808 6.48067 6.52687 6.70063 7.02462 7.05034 7.51905 7.54038 7.77897 7.88148 8.23295 8.53276 9.20640 9.80869 10.47068 11.38941 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003801 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.332612 B = 7363.768911 C = 8279.481180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.703 5.703 15 C 0.514 3.486 16 O -0.552 6.552 17 C -0.138 4.138 18 C -0.023 4.023 19 C -0.006 4.006 20 C -0.211 4.211 21 C -0.213 4.213 22 C -0.049 4.049 23 O -0.177 6.177 24 C 0.126 3.874 25 H 0.251 0.749 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.403 0.597 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.027 0.973 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -12.179 -13.299 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.023 3.977 13 H 0.105 0.895 14 N -0.353 5.353 15 C 0.301 3.699 16 O -0.430 6.430 17 C -0.178 4.178 18 C -0.060 4.060 19 C -0.056 4.056 20 C -0.230 4.230 21 C -0.232 4.232 22 C -0.116 4.116 23 O -0.073 6.073 24 C -0.002 4.002 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.217 0.783 38 H 0.044 0.956 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.038 -12.702 -12.761 18.035 hybrid contribution 0.262 1.544 -0.471 1.635 sum 1.300 -11.158 -13.231 17.357 Atomic orbital electron populations 1.69945 1.04823 1.24967 1.57456 1.24769 0.95719 0.97570 1.02428 0.86126 0.78630 0.83542 0.77530 1.21681 1.21697 1.20732 1.19060 0.90421 0.82402 1.43365 0.90558 1.44530 1.01429 0.99883 1.87235 1.21206 0.84586 0.87910 1.01235 1.23209 0.95638 1.00062 1.00283 1.22126 0.97432 0.99149 0.79010 0.89540 1.45851 1.41189 1.40953 1.07311 1.20413 0.79997 0.80230 0.89304 1.90678 1.40599 1.39087 1.72666 1.21660 1.01457 1.02034 0.92680 1.19847 1.01341 1.01273 0.83587 1.22541 0.94779 0.95117 0.93140 1.21663 1.04643 1.03787 0.92956 1.21847 1.01673 1.01795 0.97895 1.23998 1.01511 1.00987 0.85136 1.84024 1.53317 1.53717 1.16228 1.21924 0.94843 0.86338 0.97048 0.93822 0.93619 0.93781 0.91590 0.90938 0.76304 0.88751 0.88280 0.87933 0.89304 0.83358 0.83573 0.78278 0.95576 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.33 55.49 0.57 -25.98 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.11 3.40 -169.86 -0.58 -15.69 16 10 C 0.18 4.04 5.38 -2.92 -0.02 4.03 16 11 C -0.15 -2.66 6.52 -24.90 -0.16 -2.83 16 12 C 0.13 2.26 3.32 -65.78 -0.22 2.04 16 13 H 0.09 1.47 7.73 -51.93 -0.40 1.07 16 14 N -0.70 -11.16 5.22 -51.73 -0.27 -11.43 16 15 C 0.51 7.90 7.83 -10.98 -0.09 7.82 16 16 O -0.55 -10.14 15.73 5.56 0.09 -10.05 16 17 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16 18 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 19 C -0.01 -0.07 6.57 -35.63 -0.23 -0.30 16 20 C -0.21 -2.34 10.81 -39.70 -0.43 -2.77 16 21 C -0.21 -2.08 10.91 -39.70 -0.43 -2.52 16 22 C -0.05 -0.45 12.09 29.41 0.36 -0.10 16 23 O -0.18 -2.05 10.65 5.71 0.06 -1.99 16 24 C 0.13 2.68 6.92 -2.53 -0.02 2.66 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.05 1.14 7.39 -51.93 -0.38 0.76 16 27 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 5.96 8.62 -40.82 -0.35 5.61 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.09 1.04 8.10 -51.93 -0.42 0.61 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.20 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -32.34 329.66 -7.69 -40.03 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.72 Total: 4.03 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.79 Total: -0.86 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.27 Total: -53.10 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.15 Total: -12.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.34 -7.69 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.230 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds