Wall clock time and date at job start Tue Mar 31 2020 00:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.08999 * 111.00564 * 153.57779 * 12 11 10 14 14 N 1.46505 * 111.00361 * 277.42908 * 12 11 10 15 15 C 1.34769 * 119.99789 * 198.65299 * 14 12 11 16 16 O 1.21282 * 120.00337 * 359.97438 * 15 14 12 17 17 C 1.50709 * 120.00056 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47355 * 179.97438 * 17 15 14 19 19 C 1.50695 * 109.46966 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.78890 * 89.71749 * 19 18 17 21 21 C 1.41383 * 106.84256 * 179.88961 * 20 19 18 22 22 C 1.34511 * 106.83935 * 0.36996 * 21 20 19 23 23 O 1.34304 * 125.79123 * 270.02383 * 19 18 17 24 24 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 25 25 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 27 27 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 28 28 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 29 29 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 30 30 H 0.97002 * 120.00176 * 18.64700 * 14 12 11 31 31 H 1.09003 * 109.47002 * 299.99929 * 17 15 14 32 32 H 1.09003 * 109.46899 * 59.99768 * 17 15 14 33 33 H 1.08996 * 109.46946 * 300.00225 * 18 17 15 34 34 H 1.08995 * 109.46891 * 59.99945 * 18 17 15 35 35 H 1.08002 * 126.58161 * 0.02562 * 20 19 18 36 36 H 1.07995 * 126.58301 * 180.16651 * 21 20 19 37 37 H 1.08003 * 125.79299 * 179.75554 * 22 21 20 38 38 H 1.09002 * 110.36696 * 85.26297 * 24 9 7 39 39 H 1.08995 * 110.36608 * 323.05133 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.9875 -5.6870 -0.2800 14 7 0.8605 -4.5765 -2.0759 15 6 1.6903 -5.3620 -2.7906 16 8 2.4317 -6.1359 -2.2229 17 6 1.6968 -5.2788 -4.2954 18 6 2.7214 -6.2670 -4.8564 19 6 2.7284 -6.1833 -6.3610 20 6 3.4980 -5.3641 -7.0997 21 6 3.1837 -5.6179 -8.4546 22 6 2.2349 -6.5713 -8.4625 23 8 1.9630 -6.9100 -7.1916 24 6 1.9335 -3.7312 -0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5607 -2.0564 -0.8839 27 1 -0.5599 -2.0893 0.9002 28 1 -1.2974 -4.2573 -0.6785 29 1 -0.6304 -4.4236 0.9788 30 1 0.2677 -3.9574 -2.5300 31 1 0.7063 -5.5260 -4.6772 32 1 1.9625 -4.2672 -4.6021 33 1 3.7118 -6.0195 -4.4745 34 1 2.4562 -7.2787 -4.5496 35 1 4.2194 -4.6508 -6.7291 36 1 3.6193 -5.1362 -9.3175 37 1 1.7703 -6.9928 -9.3416 38 1 2.1668 -4.0420 1.0178 39 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:03 Heat of formation + Delta-G solvation = -23.584370 kcal Electronic energy + Delta-G solvation = -21185.084498 eV Core-core repulsion = 17901.017550 eV Total energy + Delta-G solvation = -3284.066948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45598 -40.93326 -38.89061 -35.41451 -35.01186 -33.74551 -33.51030 -31.07869 -29.92785 -28.76846 -26.54985 -25.36119 -22.64143 -22.21391 -21.78432 -21.20524 -21.05945 -18.96094 -18.47956 -17.68692 -17.36805 -16.83010 -16.66153 -16.57162 -15.72226 -15.47820 -15.29542 -14.81487 -14.41334 -13.88178 -13.80644 -13.71331 -13.57198 -13.49898 -13.24714 -13.01126 -12.89457 -12.78990 -12.23897 -12.10491 -12.05129 -12.01150 -11.79833 -11.60765 -10.90426 -10.79754 -10.71608 -10.02157 -9.35573 -8.85723 -7.85169 -5.18983 0.80975 1.46195 1.47001 1.55868 1.67971 1.71983 2.06193 2.39149 2.49477 3.34008 3.63808 3.68030 3.82383 3.92243 4.05286 4.11003 4.17785 4.19415 4.33542 4.35760 4.58142 4.69919 4.75972 4.78487 4.92074 4.97021 5.00087 5.03596 5.05279 5.09756 5.27570 5.44405 5.61030 5.63949 5.68927 5.77647 6.20194 6.24377 6.62947 7.11865 7.29325 7.77498 8.42156 9.24991 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.003801 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.332612 B = 7363.768911 C = 8279.481180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.141 3.859 13 H 0.101 0.899 14 N -0.703 5.703 15 C 0.514 3.486 16 O -0.582 6.582 17 C -0.127 4.127 18 C -0.016 4.016 19 C -0.024 4.024 20 C -0.222 4.222 21 C -0.229 4.229 22 C -0.043 4.043 23 O -0.191 6.191 24 C 0.122 3.878 25 H 0.247 0.753 26 H 0.021 0.979 27 H 0.008 0.992 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.238 0.762 38 H 0.028 0.972 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -12.905 -14.775 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.171 4.171 12 C 0.035 3.965 13 H 0.119 0.881 14 N -0.353 5.353 15 C 0.302 3.698 16 O -0.463 6.463 17 C -0.167 4.167 18 C -0.054 4.054 19 C -0.073 4.073 20 C -0.241 4.241 21 C -0.248 4.248 22 C -0.110 4.110 23 O -0.088 6.088 24 C -0.004 4.004 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.254 0.746 38 H 0.046 0.954 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.810 -13.447 -14.249 19.609 hybrid contribution 0.382 1.749 -0.041 1.791 sum 1.193 -11.698 -14.291 18.507 Atomic orbital electron populations 1.70141 1.05950 1.25230 1.58182 1.25521 0.96606 1.00522 1.02589 0.85147 0.77576 0.79514 0.77491 1.21185 1.21929 1.19989 1.19352 0.90683 0.83900 1.43157 0.90939 1.44766 1.02480 1.00510 1.87031 1.21006 0.83344 0.91554 0.98290 1.23064 0.96490 0.95425 1.02141 1.21934 0.95772 0.98762 0.80017 0.88091 1.45865 1.41547 1.41250 1.06653 1.20999 0.78893 0.79196 0.90670 1.90665 1.41703 1.40346 1.73605 1.21621 1.02779 1.02530 0.89721 1.19716 1.00855 1.00886 0.83957 1.22476 0.95762 0.96016 0.93088 1.21927 1.04548 1.03707 0.93913 1.22176 1.02224 1.02417 0.97939 1.24793 1.00821 1.00189 0.85169 1.84015 1.53585 1.54021 1.17191 1.22049 0.95460 0.85691 0.97222 0.94344 0.96076 0.97392 0.88579 0.89229 0.75576 0.86640 0.87612 0.88652 0.89734 0.82942 0.81613 0.74614 0.95398 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.32 10.33 21.65 0.22 -55.10 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.59 10.28 84.03 0.86 -12.72 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -31.41 3.40 -691.30 -2.35 -33.76 16 10 C 0.18 8.48 5.38 86.68 0.47 8.95 16 11 C -0.13 -4.37 6.52 31.78 0.21 -4.16 16 12 C 0.14 4.76 3.32 46.38 0.15 4.91 16 13 H 0.10 3.21 7.73 -2.39 -0.02 3.19 16 14 N -0.70 -21.30 5.22 -435.96 -2.28 -23.57 16 15 C 0.51 15.18 7.83 87.66 0.69 15.87 16 16 O -0.58 -20.98 15.73 -3.03 -0.05 -21.03 16 17 C -0.13 -2.78 5.68 29.85 0.17 -2.61 16 18 C -0.02 -0.37 5.04 29.85 0.15 -0.22 16 19 C -0.02 -0.52 6.57 24.83 0.16 -0.36 16 20 C -0.22 -4.67 10.81 22.19 0.24 -4.43 16 21 C -0.23 -4.02 10.91 22.19 0.24 -3.77 16 22 C -0.04 -0.69 12.09 66.97 0.81 0.12 16 23 O -0.19 -4.13 10.65 -2.50 -0.03 -4.15 16 24 C 0.12 5.19 6.92 86.86 0.60 5.79 16 25 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 26 H 0.02 1.07 7.39 -2.38 -0.02 1.05 16 27 H 0.01 0.42 7.51 -2.39 -0.02 0.40 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.41 11.46 8.62 -92.71 -0.80 10.66 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.22 8.10 -2.39 -0.02 2.20 16 34 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.33 329.66 3.01 -67.32 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.25 Total: 18.21 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.22 Total: 4.52 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -4.40 Total: -112.43 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.18 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -70.33 3.01 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.731 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds