Wall clock time and date at job start Tue Mar 31 2020 00:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.09000 * 111.00496 * 206.38476 * 12 11 10 14 14 N 1.46496 * 111.00739 * 82.56573 * 12 11 10 15 15 C 1.34778 * 120.00113 * 154.99816 * 14 12 11 16 16 O 1.21282 * 119.99975 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00177 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47213 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47280 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.79420 * 89.71589 * 19 18 17 21 21 C 1.41379 * 106.84110 * 179.89178 * 20 19 18 22 22 C 1.34514 * 106.84152 * 0.37184 * 21 20 19 23 23 O 1.34296 * 108.42272 * 359.77131 * 22 21 20 24 24 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 27 27 H 1.09004 * 109.88144 * 61.60709 * 10 9 7 28 28 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 29 29 H 1.08993 * 110.72111 * 263.83180 * 11 10 9 30 30 H 0.96994 * 120.00066 * 335.00429 * 14 12 11 31 31 H 1.09000 * 109.47643 * 300.00795 * 17 15 14 32 32 H 1.09004 * 109.47150 * 60.00836 * 17 15 14 33 33 H 1.09000 * 109.47186 * 300.00045 * 18 17 15 34 34 H 1.09000 * 109.47211 * 60.00387 * 18 17 15 35 35 H 1.08003 * 126.57768 * 0.02562 * 20 19 18 36 36 H 1.08007 * 126.57668 * 180.12602 * 21 20 19 37 37 H 1.08004 * 125.78439 * 179.75479 * 22 21 20 38 38 H 1.08999 * 110.36600 * 274.74731 * 24 9 7 39 39 H 1.09003 * 110.36161 * 37.06348 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.9831 -5.6870 0.2536 14 7 0.8578 -4.5868 2.0555 15 6 1.5894 -5.4642 2.7706 16 8 2.2429 -6.3136 2.2028 17 6 1.5963 -5.3892 4.2757 18 6 2.4995 -6.4892 4.8370 19 6 2.5059 -6.4146 6.3422 20 6 1.6539 -7.0519 7.1651 21 6 2.0212 -6.7031 8.4850 22 6 3.0706 -5.8670 8.3895 23 8 3.3598 -5.6958 7.0893 24 6 1.9333 -3.7311 -0.0198 25 1 -0.4850 0.8401 0.0004 26 1 -0.5579 -2.0568 0.8780 27 1 -0.5542 -2.0796 -0.9076 28 1 -1.2989 -4.2550 0.6592 29 1 -0.6315 -4.4127 -0.9988 30 1 0.3354 -3.9073 2.5096 31 1 1.9725 -4.4154 4.5893 32 1 0.5819 -5.5248 4.6509 33 1 2.1236 -7.4632 4.5235 34 1 3.5138 -6.3533 4.4619 35 1 0.8457 -7.7063 6.8735 36 1 1.5474 -7.0399 9.3953 37 1 3.5918 -5.4105 9.2180 38 1 2.1623 -4.0340 -1.0415 39 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265271013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:06 Heat of formation + Delta-G solvation = -3.073618 kcal Electronic energy + Delta-G solvation = -21150.404530 eV Core-core repulsion = 17867.226995 eV Total energy + Delta-G solvation = -3283.177535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.67889 -39.60795 -37.30983 -34.10829 -33.71384 -32.89966 -31.79810 -29.39889 -28.82696 -27.19943 -24.86344 -24.10031 -21.87786 -20.83281 -20.27534 -20.05074 -19.74754 -17.65160 -17.05094 -16.55053 -16.15481 -15.68857 -15.51199 -14.66406 -14.55180 -13.94888 -13.79585 -13.52413 -13.14092 -12.95793 -12.76994 -12.49913 -12.30627 -12.03317 -11.93452 -11.80952 -11.15417 -10.96978 -10.91642 -10.71644 -10.37007 -10.11770 -10.06547 -9.95740 -9.69290 -9.59028 -8.74955 -8.57938 -8.52467 -6.83517 -5.73696 -3.06188 1.59203 2.46815 2.85873 2.89185 3.38456 3.44907 3.46888 3.55258 4.48985 4.54460 4.82637 4.86736 4.91634 5.03465 5.16800 5.32360 5.43706 5.47150 5.52993 5.60402 5.67591 5.76858 5.82853 5.85928 5.87720 6.03909 6.20463 6.36355 6.37184 6.48498 6.52023 6.68169 7.02252 7.04260 7.52189 7.54812 7.78255 7.87875 8.23160 8.52016 9.20621 9.80574 10.46299 11.38280 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.003742 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.269342 B = 7480.049455 C = 8383.607017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.090 0.910 14 N -0.703 5.703 15 C 0.514 3.486 16 O -0.553 6.553 17 C -0.138 4.138 18 C -0.024 4.024 19 C -0.004 4.004 20 C -0.214 4.214 21 C -0.215 4.215 22 C -0.046 4.046 23 O -0.175 6.175 24 C 0.125 3.875 25 H 0.251 0.749 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.404 0.596 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.028 0.972 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -12.820 13.289 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.108 0.892 14 N -0.352 5.352 15 C 0.300 3.700 16 O -0.432 6.432 17 C -0.178 4.178 18 C -0.061 4.061 19 C -0.054 4.054 20 C -0.233 4.233 21 C -0.234 4.234 22 C -0.114 4.114 23 O -0.071 6.071 24 C -0.002 4.002 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.238 0.762 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.217 0.783 38 H 0.045 0.955 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.834 -13.007 12.741 18.227 hybrid contribution -0.035 1.287 0.464 1.368 sum 0.799 -11.721 13.205 17.674 Atomic orbital electron populations 1.69961 1.04824 1.24851 1.57502 1.24777 0.95726 0.97595 1.02410 0.86053 0.78771 0.83804 0.77211 1.20544 1.21776 1.21813 1.19111 0.90472 0.82401 1.43283 0.90496 1.44495 1.01491 0.99920 1.87220 1.21174 0.84565 0.87964 1.01233 1.23222 0.95748 1.00029 1.00263 1.22170 0.97329 0.99371 0.79016 0.89224 1.45842 1.48425 1.33660 1.07315 1.20427 0.79087 0.81113 0.89336 1.90675 1.42802 1.37002 1.72679 1.21656 1.02200 1.01324 0.92655 1.19852 1.02290 1.00197 0.83788 1.22553 0.92186 0.96440 0.94257 1.21611 1.03197 1.06009 0.92479 1.21832 1.00139 1.03016 0.98453 1.24025 1.00447 1.02991 0.83903 1.84051 1.49205 1.56446 1.17354 1.21986 0.94823 0.86353 0.97066 0.93870 0.93605 0.93795 0.91618 0.90999 0.76181 0.88384 0.88598 0.88050 0.89161 0.83479 0.83595 0.78255 0.95475 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.09 3.39 -169.92 -0.58 -15.67 16 10 C 0.18 4.04 5.36 -3.06 -0.02 4.03 16 11 C -0.15 -2.69 6.55 -24.90 -0.16 -2.85 16 12 C 0.13 2.23 3.43 -65.66 -0.23 2.01 16 13 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 14 N -0.70 -11.16 5.20 -51.62 -0.27 -11.43 16 15 C 0.51 7.83 7.83 -10.99 -0.09 7.74 16 16 O -0.55 -10.06 15.62 5.56 0.09 -9.97 16 17 C -0.14 -1.60 5.68 -27.89 -0.16 -1.76 16 18 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 19 C 0.00 -0.05 6.58 -35.62 -0.23 -0.28 16 20 C -0.21 -2.23 10.81 -39.71 -0.43 -2.65 16 21 C -0.22 -2.04 10.91 -39.70 -0.43 -2.47 16 22 C -0.05 -0.44 12.09 29.42 0.36 -0.08 16 23 O -0.17 -2.11 10.65 5.70 0.06 -2.05 16 24 C 0.12 2.65 6.95 -2.41 -0.02 2.63 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.05 1.15 7.39 -51.93 -0.38 0.76 16 27 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 6.08 8.67 -40.82 -0.35 5.73 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -32.32 329.49 -7.69 -40.01 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.71 Total: 3.91 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.80 Total: -0.81 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.27 Total: -53.05 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.15 Total: -12.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.32 -7.69 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.936 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds