Wall clock time and date at job start Tue Mar 31 2020 00:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.09000 * 111.00496 * 206.38476 * 12 11 10 14 14 N 1.46496 * 111.00739 * 82.56573 * 12 11 10 15 15 C 1.34778 * 120.00113 * 154.99816 * 14 12 11 16 16 O 1.21282 * 119.99975 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00177 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47213 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47280 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.79420 * 89.71589 * 19 18 17 21 21 C 1.41379 * 106.84110 * 179.89178 * 20 19 18 22 22 C 1.34514 * 106.84152 * 0.37184 * 21 20 19 23 23 O 1.34296 * 108.42272 * 359.77131 * 22 21 20 24 24 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 27 27 H 1.09004 * 109.88144 * 61.60709 * 10 9 7 28 28 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 29 29 H 1.08993 * 110.72111 * 263.83180 * 11 10 9 30 30 H 0.96994 * 120.00066 * 335.00429 * 14 12 11 31 31 H 1.09000 * 109.47643 * 300.00795 * 17 15 14 32 32 H 1.09004 * 109.47150 * 60.00836 * 17 15 14 33 33 H 1.09000 * 109.47186 * 300.00045 * 18 17 15 34 34 H 1.09000 * 109.47211 * 60.00387 * 18 17 15 35 35 H 1.08003 * 126.57768 * 0.02562 * 20 19 18 36 36 H 1.08007 * 126.57668 * 180.12602 * 21 20 19 37 37 H 1.08004 * 125.78439 * 179.75479 * 22 21 20 38 38 H 1.08999 * 110.36600 * 274.74731 * 24 9 7 39 39 H 1.09003 * 110.36161 * 37.06348 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.9831 -5.6870 0.2536 14 7 0.8578 -4.5868 2.0555 15 6 1.5894 -5.4642 2.7706 16 8 2.2429 -6.3136 2.2028 17 6 1.5963 -5.3892 4.2757 18 6 2.4995 -6.4892 4.8370 19 6 2.5059 -6.4146 6.3422 20 6 1.6539 -7.0519 7.1651 21 6 2.0212 -6.7031 8.4850 22 6 3.0706 -5.8670 8.3895 23 8 3.3598 -5.6958 7.0893 24 6 1.9333 -3.7311 -0.0198 25 1 -0.4850 0.8401 0.0004 26 1 -0.5579 -2.0568 0.8780 27 1 -0.5542 -2.0796 -0.9076 28 1 -1.2989 -4.2550 0.6592 29 1 -0.6315 -4.4127 -0.9988 30 1 0.3354 -3.9073 2.5096 31 1 1.9725 -4.4154 4.5893 32 1 0.5819 -5.5248 4.6509 33 1 2.1236 -7.4632 4.5235 34 1 3.5138 -6.3533 4.4619 35 1 0.8457 -7.7063 6.8735 36 1 1.5474 -7.0399 9.3953 37 1 3.5918 -5.4105 9.2180 38 1 2.1623 -4.0340 -1.0415 39 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:06 Heat of formation + Delta-G solvation = -23.840253 kcal Electronic energy + Delta-G solvation = -21151.305039 eV Core-core repulsion = 17867.226995 eV Total energy + Delta-G solvation = -3284.078044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45311 -40.93034 -38.91490 -35.41804 -35.01281 -33.74074 -33.51037 -31.07667 -29.92085 -28.77428 -26.54579 -25.36051 -22.63163 -22.17930 -21.79104 -21.21989 -21.07894 -18.96332 -18.49190 -17.69642 -17.35114 -16.82561 -16.65526 -16.58523 -15.74641 -15.39964 -15.34764 -14.79274 -14.43198 -13.90934 -13.81330 -13.68877 -13.56073 -13.49243 -13.24543 -13.00445 -12.87406 -12.82460 -12.26292 -12.08155 -12.05356 -11.99239 -11.81272 -11.58190 -10.90810 -10.79003 -10.72746 -10.02700 -9.34946 -8.86105 -7.85593 -5.19557 0.81654 1.45588 1.46266 1.56328 1.66669 1.73771 2.08010 2.39476 2.48940 3.33517 3.64119 3.68394 3.83281 3.94045 4.04884 4.10693 4.18950 4.19748 4.33771 4.35530 4.59066 4.70046 4.76151 4.77770 4.91244 4.97585 5.00170 5.03219 5.05724 5.10673 5.28133 5.44643 5.60657 5.66569 5.69434 5.77696 6.20091 6.26168 6.62584 7.11900 7.28329 7.77386 8.41409 9.24436 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.003742 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.269342 B = 7480.049455 C = 8383.607017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.104 0.896 14 N -0.703 5.703 15 C 0.515 3.485 16 O -0.583 6.583 17 C -0.127 4.127 18 C -0.017 4.017 19 C -0.028 4.028 20 C -0.214 4.214 21 C -0.226 4.226 22 C -0.049 4.049 23 O -0.198 6.198 24 C 0.121 3.879 25 H 0.247 0.753 26 H 0.021 0.979 27 H 0.007 0.993 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.409 0.591 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.233 0.767 38 H 0.030 0.970 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -13.675 14.737 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.034 3.966 13 H 0.121 0.879 14 N -0.353 5.353 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.167 4.167 18 C -0.055 4.055 19 C -0.078 4.078 20 C -0.233 4.233 21 C -0.245 4.245 22 C -0.116 4.116 23 O -0.095 6.095 24 C -0.005 4.005 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.244 0.756 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.187 0.813 37 H 0.249 0.751 38 H 0.048 0.952 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.491 -13.885 14.202 19.868 hybrid contribution 0.117 1.527 0.044 1.532 sum 0.608 -12.358 14.246 18.869 Atomic orbital electron populations 1.70154 1.05937 1.25146 1.58230 1.25524 0.96615 1.00528 1.02604 0.85077 0.78000 0.79830 0.76812 1.19653 1.21913 1.21665 1.19391 0.90703 0.83901 1.43036 0.90919 1.44727 1.02518 1.00554 1.87012 1.20967 0.83357 0.91562 0.98280 1.23072 0.96596 0.95435 1.02086 1.21968 0.95656 0.98936 0.80042 0.87855 1.45859 1.48744 1.34036 1.06652 1.21008 0.77886 0.80105 0.90691 1.90663 1.43866 1.38200 1.73605 1.21623 1.03877 1.01483 0.89692 1.19740 1.01247 1.00320 0.84159 1.22562 0.93172 0.97778 0.94240 1.21934 1.03052 1.05458 0.92862 1.22200 1.00309 1.03020 0.98971 1.24781 1.00511 1.02645 0.83627 1.84034 1.49866 1.57045 1.18588 1.22121 0.95447 0.85670 0.97306 0.94347 0.96062 0.97426 0.88706 0.89315 0.75612 0.88337 0.85933 0.87492 0.90858 0.81941 0.81331 0.75104 0.95203 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.30 10.31 21.65 0.22 -55.08 16 2 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 3 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.24 -13.54 10.28 84.04 0.86 -12.68 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.62 -31.37 3.39 -691.51 -2.35 -33.71 16 10 C 0.18 8.51 5.36 86.73 0.46 8.97 16 11 C -0.13 -4.41 6.55 31.78 0.21 -4.20 16 12 C 0.14 4.72 3.43 46.46 0.16 4.88 16 13 H 0.10 3.30 7.54 -2.39 -0.02 3.28 16 14 N -0.70 -21.32 5.20 -435.61 -2.26 -23.59 16 15 C 0.51 15.03 7.83 87.65 0.69 15.71 16 16 O -0.58 -20.69 15.62 -3.04 -0.05 -20.74 16 17 C -0.13 -2.75 5.68 29.85 0.17 -2.58 16 18 C -0.02 -0.37 5.04 29.85 0.15 -0.22 16 19 C -0.03 -0.61 6.58 24.83 0.16 -0.45 16 20 C -0.21 -4.04 10.81 22.19 0.24 -3.80 16 21 C -0.23 -3.76 10.91 22.19 0.24 -3.51 16 22 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 23 O -0.20 -4.61 10.65 -2.52 -0.03 -4.64 16 24 C 0.12 5.11 6.95 86.93 0.60 5.72 16 25 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 26 H 0.02 1.08 7.39 -2.39 -0.02 1.06 16 27 H 0.01 0.40 7.50 -2.38 -0.02 0.38 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.41 11.71 8.67 -92.71 -0.80 10.91 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.11 2.17 8.10 -2.39 -0.02 2.15 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -70.40 329.49 3.04 -67.36 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.24 Total: 17.76 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.23 Total: 4.95 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -4.39 Total: -112.38 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.40 3.04 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.524 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds