Wall clock time and date at job start Tue Mar 31 2020 00:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47382 * 270.00491 * 3 2 1 5 5 H 1.48504 * 109.47036 * 30.00283 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00267 * 3 2 1 7 7 C 1.38808 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00387 * 0.02562 * 7 2 1 9 9 N 1.36946 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.46488 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.46863 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46815 * 65.00836 * 11 10 9 13 13 N 1.46496 * 109.47076 * 304.99917 * 11 10 9 14 14 C 1.34774 * 119.99544 * 155.00017 * 13 11 10 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 11 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 11 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.34512 * 125.79319 * 89.99543 * 17 16 14 19 19 C 1.41380 * 106.84217 * 179.97438 * 18 17 16 20 20 C 1.34522 * 106.83858 * 0.02562 * 19 18 17 21 21 O 1.34296 * 108.41991 * 359.72958 * 20 19 18 22 22 C 1.53003 * 109.46752 * 184.99858 * 11 10 9 23 23 C 1.52999 * 117.49917 * 248.74612 * 22 11 10 24 24 C 1.52998 * 117.49620 * 180.08747 * 22 11 10 25 25 H 0.96996 * 120.00103 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99444 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47677 * 60.00443 * 10 9 7 28 28 H 1.08994 * 109.47610 * 300.00143 * 10 9 7 29 29 H 0.96994 * 120.00700 * 335.00136 * 13 11 10 30 30 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 31 31 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 32 32 H 1.07995 * 126.58079 * 0.03730 * 18 17 16 33 33 H 1.07994 * 126.58088 * 179.97438 * 19 18 17 34 34 H 1.07998 * 125.78711 * 180.02562 * 20 19 18 35 35 H 1.09005 * 115.54981 * 34.42362 * 22 11 10 36 36 H 1.09000 * 117.50006 * 0.02562 * 23 22 11 37 37 H 1.09002 * 117.49525 * 145.02325 * 23 22 11 38 38 H 1.09002 * 117.49935 * 214.98181 * 24 22 11 39 39 H 1.09010 * 117.50105 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8949 -1.6975 0.9286 13 7 5.9508 -1.3236 -1.1344 14 6 7.0488 -0.5436 -1.0842 15 8 7.7601 -0.5603 -0.1021 16 6 7.3926 0.3494 -2.2485 17 6 8.6569 1.1100 -1.9420 18 6 9.9077 0.7032 -2.2240 19 6 10.7809 1.7167 -1.7666 20 6 10.0115 2.6819 -1.2319 21 8 8.7257 2.3116 -1.3460 22 6 6.3802 -3.5109 -0.1281 23 6 7.1802 -3.9827 1.0878 24 6 7.9086 -3.4436 -0.1458 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.8485 -3.0427 -0.8909 28 1 3.8491 -3.0422 0.8891 29 1 5.3821 -1.3105 -1.9201 30 1 7.5420 -0.2585 -3.1408 31 1 6.5776 1.0525 -2.4202 32 1 10.1906 -0.2199 -2.7079 33 1 11.8588 1.7157 -1.8329 34 1 10.3673 3.6012 -0.7905 35 1 5.9029 -4.2737 -0.7434 36 1 7.1620 -3.3532 1.9774 37 1 7.2295 -5.0559 1.2722 38 1 8.4368 -4.1622 -0.7724 39 1 8.3700 -2.4590 -0.0675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269130981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:37 Heat of formation + Delta-G solvation = 20.181714 kcal Electronic energy + Delta-G solvation = -21654.749201 eV Core-core repulsion = 18372.580093 eV Total energy + Delta-G solvation = -3282.169108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59754 -39.91253 -37.32845 -35.20352 -33.55028 -33.19073 -32.17939 -31.27159 -28.71339 -26.90319 -23.96027 -22.23874 -21.80750 -21.54227 -21.26476 -20.24736 -20.10747 -17.93351 -17.40493 -17.06957 -16.19438 -15.70082 -15.56398 -15.00936 -14.59770 -14.48862 -14.00249 -13.63307 -13.32059 -12.92913 -12.86874 -12.75514 -12.73884 -12.24672 -11.96733 -11.87115 -11.28951 -11.25017 -11.07094 -10.90855 -10.25204 -10.19228 -10.01171 -9.95203 -9.72899 -9.64147 -8.97764 -8.80898 -8.50532 -7.31031 -5.82150 -3.18698 1.66234 2.54790 2.67952 2.89410 3.32000 3.35969 3.39004 3.42809 4.06001 4.47864 4.54417 4.71174 4.88322 4.92511 4.96857 5.08016 5.16488 5.20708 5.22625 5.33286 5.46074 5.57992 5.73508 5.74037 5.79537 5.84340 5.88126 6.03272 6.04855 6.26640 6.35992 6.43000 6.44577 6.54581 6.78077 7.09433 7.65594 7.93067 8.33390 8.36771 9.14934 9.87094 10.06201 11.36001 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.005770 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.424458 B = 4851.349939 C = 6507.330611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.165 3.835 12 H 0.088 0.912 13 N -0.711 5.711 14 C 0.515 3.485 15 O -0.532 6.532 16 C -0.067 4.067 17 C 0.013 3.987 18 C -0.199 4.199 19 C -0.215 4.215 20 C -0.040 4.040 21 O -0.171 6.171 22 C -0.162 4.162 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.406 0.594 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.201 0.799 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.358 -1.354 -5.881 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.025 3.975 11 C 0.061 3.939 12 H 0.106 0.894 13 N -0.362 5.362 14 C 0.301 3.699 15 O -0.410 6.410 16 C -0.107 4.107 17 C -0.038 4.038 18 C -0.219 4.219 19 C -0.234 4.234 20 C -0.108 4.108 21 O -0.067 6.067 22 C -0.182 4.182 23 C -0.208 4.208 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.241 0.759 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.343 -1.287 -5.069 21.005 hybrid contribution 0.453 1.117 -0.370 1.261 sum 20.796 -0.169 -5.439 21.497 Atomic orbital electron populations 1.69692 1.05084 1.25902 1.57260 1.24648 0.95185 0.97114 1.01837 0.86618 0.79393 0.85129 0.77842 1.20968 1.21584 1.20349 1.19043 0.80461 0.94788 1.43411 0.89075 1.42702 1.04104 1.02078 1.91270 1.20897 0.86865 0.89830 0.99863 1.20877 0.95227 0.88084 0.89761 0.89417 1.45988 1.26415 1.42695 1.21064 1.20274 0.81036 0.80227 0.88372 1.90654 1.50175 1.66643 1.33489 1.20148 0.94353 0.97554 0.98621 1.21504 0.96052 0.85831 1.00390 1.21472 0.91657 1.01462 1.07260 1.21768 1.00638 0.95544 1.05432 1.23979 0.80276 1.01569 1.04979 1.84014 1.29148 1.31884 1.61659 1.22623 0.93673 0.99053 1.02875 1.22902 1.04409 1.00774 0.92748 1.23267 0.93976 1.04072 1.00888 0.92975 0.80456 0.94771 0.93822 0.75947 0.85826 0.86891 0.83680 0.83612 0.78276 0.87649 0.88786 0.89089 0.89824 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.03 27.73 -169.99 -4.71 17.31 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 7 C -0.25 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.30 5.24 -59.91 -0.31 -17.61 16 10 C 0.15 2.79 5.80 -4.04 -0.02 2.77 16 11 C 0.16 2.57 2.43 -67.93 -0.17 2.41 16 12 H 0.09 1.58 7.34 -51.93 -0.38 1.19 16 13 N -0.71 -10.05 4.50 -53.80 -0.24 -10.29 16 14 C 0.52 7.51 7.16 -10.98 -0.08 7.43 16 15 O -0.53 -9.51 13.06 5.56 0.07 -9.43 16 16 C -0.07 -0.76 6.23 -29.03 -0.18 -0.94 16 17 C 0.01 0.17 5.81 -35.63 -0.21 -0.04 16 18 C -0.20 -2.40 10.81 -39.70 -0.43 -2.83 16 19 C -0.21 -2.37 10.91 -39.70 -0.43 -2.80 16 20 C -0.04 -0.45 12.09 29.42 0.36 -0.10 16 21 O -0.17 -2.45 10.65 5.72 0.06 -2.39 16 22 C -0.16 -2.15 5.36 -90.62 -0.49 -2.64 16 23 C -0.17 -2.16 10.18 -26.69 -0.27 -2.43 16 24 C -0.19 -2.40 9.73 -26.70 -0.26 -2.66 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.36 8.31 5.20 -40.82 -0.21 8.09 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.41 5.12 8.60 -40.82 -0.35 4.77 16 30 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.29 8.11 -51.93 -0.42 0.86 16 36 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.78 5.02 -51.92 -0.26 1.51 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -34.10 330.08 -7.26 -41.36 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.44 Total: 12.90 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.43 Total: -8.68 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.22 Total: -56.05 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.13 Total: -11.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.10 -7.26 -41.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269130981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.542 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds