Wall clock time and date at job start Tue Mar 31 2020 00:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47382 * 270.00491 * 3 2 1 5 5 H 1.48504 * 109.47036 * 30.00283 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00267 * 3 2 1 7 7 C 1.38808 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00387 * 0.02562 * 7 2 1 9 9 N 1.36946 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.46488 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.46863 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46815 * 65.00836 * 11 10 9 13 13 N 1.46496 * 109.47076 * 304.99917 * 11 10 9 14 14 C 1.34774 * 119.99544 * 155.00017 * 13 11 10 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 11 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 11 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.34512 * 125.79319 * 89.99543 * 17 16 14 19 19 C 1.41380 * 106.84217 * 179.97438 * 18 17 16 20 20 C 1.34522 * 106.83858 * 0.02562 * 19 18 17 21 21 O 1.34296 * 108.41991 * 359.72958 * 20 19 18 22 22 C 1.53003 * 109.46752 * 184.99858 * 11 10 9 23 23 C 1.52999 * 117.49917 * 248.74612 * 22 11 10 24 24 C 1.52998 * 117.49620 * 180.08747 * 22 11 10 25 25 H 0.96996 * 120.00103 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99444 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47677 * 60.00443 * 10 9 7 28 28 H 1.08994 * 109.47610 * 300.00143 * 10 9 7 29 29 H 0.96994 * 120.00700 * 335.00136 * 13 11 10 30 30 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 31 31 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 32 32 H 1.07995 * 126.58079 * 0.03730 * 18 17 16 33 33 H 1.07994 * 126.58088 * 179.97438 * 19 18 17 34 34 H 1.07998 * 125.78711 * 180.02562 * 20 19 18 35 35 H 1.09005 * 115.54981 * 34.42362 * 22 11 10 36 36 H 1.09000 * 117.50006 * 0.02562 * 23 22 11 37 37 H 1.09002 * 117.49525 * 145.02325 * 23 22 11 38 38 H 1.09002 * 117.49935 * 214.98181 * 24 22 11 39 39 H 1.09010 * 117.50105 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8949 -1.6975 0.9286 13 7 5.9508 -1.3236 -1.1344 14 6 7.0488 -0.5436 -1.0842 15 8 7.7601 -0.5603 -0.1021 16 6 7.3926 0.3494 -2.2485 17 6 8.6569 1.1100 -1.9420 18 6 9.9077 0.7032 -2.2240 19 6 10.7809 1.7167 -1.7666 20 6 10.0115 2.6819 -1.2319 21 8 8.7257 2.3116 -1.3460 22 6 6.3802 -3.5109 -0.1281 23 6 7.1802 -3.9827 1.0878 24 6 7.9086 -3.4436 -0.1458 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.8485 -3.0427 -0.8909 28 1 3.8491 -3.0422 0.8891 29 1 5.3821 -1.3105 -1.9201 30 1 7.5420 -0.2585 -3.1408 31 1 6.5776 1.0525 -2.4202 32 1 10.1906 -0.2199 -2.7079 33 1 11.8588 1.7157 -1.8329 34 1 10.3673 3.6012 -0.7905 35 1 5.9029 -4.2737 -0.7434 36 1 7.1620 -3.3532 1.9774 37 1 7.2295 -5.0559 1.2722 38 1 8.4368 -4.1622 -0.7724 39 1 8.3700 -2.4590 -0.0675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269130981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:36 Heat of formation + Delta-G solvation = -2.999422 kcal Electronic energy + Delta-G solvation = -21655.754410 eV Core-core repulsion = 18372.580093 eV Total energy + Delta-G solvation = -3283.174317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.48326 -41.07787 -38.50639 -36.75990 -35.03003 -34.12063 -33.45587 -32.86188 -30.17693 -27.91291 -25.70088 -23.33966 -23.03379 -22.67631 -22.41550 -21.36143 -21.14080 -19.83203 -18.36146 -18.23034 -17.29608 -16.84743 -16.66654 -16.53299 -16.11444 -15.52514 -15.41188 -14.86363 -14.75916 -14.60494 -14.05737 -13.72099 -13.66550 -13.54153 -13.48935 -12.90930 -12.79048 -12.69505 -12.54094 -12.24182 -12.13882 -11.85522 -11.29365 -11.13495 -11.03711 -10.87744 -10.78613 -10.00127 -9.38576 -9.33173 -8.04738 -5.38171 0.76656 1.33886 1.37601 1.43378 1.59005 1.68932 2.03172 2.33155 2.44525 3.01780 3.27287 3.42161 3.61898 3.84826 3.93154 4.03467 4.14144 4.15344 4.16273 4.28344 4.37418 4.42009 4.46228 4.60406 4.82560 4.88889 4.93071 5.02251 5.04690 5.07997 5.21623 5.28830 5.36999 5.53977 5.64188 5.75005 6.18910 6.22318 6.56004 7.04955 7.24150 7.80088 7.98337 9.16657 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.005770 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.424458 B = 4851.349939 C = 6507.330611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.055 4.055 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.064 0.936 9 N -0.757 5.757 10 C 0.153 3.847 11 C 0.176 3.824 12 H 0.061 0.939 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.569 6.569 16 C -0.061 4.061 17 C -0.016 4.016 18 C -0.204 4.204 19 C -0.225 4.225 20 C -0.049 4.049 21 O -0.200 6.200 22 C -0.162 4.162 23 C -0.170 4.170 24 C -0.179 4.179 25 H 0.258 0.742 26 H 0.364 0.636 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.414 0.586 30 H 0.161 0.839 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.232 0.768 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.553 -1.513 -7.018 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.247 4.247 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.082 0.918 9 N -0.403 5.403 10 C 0.027 3.973 11 C 0.071 3.929 12 H 0.079 0.921 13 N -0.359 5.359 14 C 0.301 3.699 15 O -0.448 6.448 16 C -0.100 4.100 17 C -0.066 4.066 18 C -0.223 4.223 19 C -0.244 4.244 20 C -0.116 4.116 21 O -0.097 6.097 22 C -0.182 4.182 23 C -0.208 4.208 24 C -0.215 4.215 25 H 0.067 0.933 26 H 0.197 0.803 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.251 0.749 30 H 0.178 0.822 31 H 0.140 0.860 32 H 0.179 0.821 33 H 0.188 0.812 34 H 0.248 0.752 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.578 -1.475 -6.232 23.469 hybrid contribution -0.180 1.077 0.027 1.092 sum 22.397 -0.399 -6.206 23.244 Atomic orbital electron populations 1.69855 1.06926 1.26612 1.59649 1.25365 0.95918 1.00693 1.02733 0.85558 0.78011 0.80503 0.78538 1.19216 1.22472 1.19508 1.19045 0.82437 0.93636 1.41161 0.91795 1.42692 1.02579 1.03928 1.91065 1.21032 0.88231 0.87893 1.00166 1.20578 0.93456 0.89468 0.89389 0.92103 1.45942 1.26605 1.42503 1.20825 1.20828 0.80352 0.80008 0.88755 1.90643 1.51309 1.67736 1.35134 1.20245 0.94127 0.97360 0.98304 1.21901 0.97157 0.86108 1.01458 1.21835 0.91589 1.02139 1.06760 1.22164 1.01903 0.95185 1.05114 1.24741 0.79454 1.02800 1.04590 1.83992 1.30703 1.32640 1.62346 1.22548 0.93782 0.98052 1.03808 1.22985 1.03847 1.01863 0.92077 1.23198 0.93504 1.03510 1.01337 0.93283 0.80298 0.93208 0.94232 0.74900 0.82164 0.86046 0.82073 0.81239 0.75200 0.85879 0.90207 0.86822 0.87721 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.87 13.97 21.65 0.30 -61.57 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 3 Si 0.95 45.51 27.73 68.60 1.90 47.41 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.27 -12.44 6.52 99.48 0.65 -11.79 16 7 C -0.23 -12.85 10.47 84.03 0.88 -11.97 16 8 H 0.06 3.84 8.06 -2.92 -0.02 3.82 16 9 N -0.76 -34.00 5.24 -343.46 -1.80 -35.80 16 10 C 0.15 5.40 5.80 86.38 0.50 5.91 16 11 C 0.18 5.29 2.43 45.00 0.11 5.40 16 12 H 0.06 2.18 7.34 -2.39 -0.02 2.16 16 13 N -0.71 -18.82 4.50 -442.52 -1.99 -20.81 16 14 C 0.51 14.26 7.16 87.66 0.63 14.89 16 15 O -0.57 -20.08 13.06 -3.02 -0.04 -20.12 16 16 C -0.06 -1.27 6.23 29.10 0.18 -1.09 16 17 C -0.02 -0.41 5.81 24.83 0.14 -0.26 16 18 C -0.20 -4.55 10.81 22.19 0.24 -4.31 16 19 C -0.22 -4.54 10.91 22.19 0.24 -4.30 16 20 C -0.05 -1.03 12.09 66.97 0.81 -0.22 16 21 O -0.20 -5.54 10.65 -2.45 -0.03 -5.57 16 22 C -0.16 -3.96 5.36 -10.79 -0.06 -4.02 16 23 C -0.17 -4.00 10.18 30.62 0.31 -3.68 16 24 C -0.18 -4.27 9.73 30.62 0.30 -3.97 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.36 16.18 5.20 -92.71 -0.48 15.70 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.41 9.52 8.60 -92.71 -0.80 8.73 16 30 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.23 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.12 2.61 8.11 -2.38 -0.02 2.59 16 36 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 2.78 5.02 -2.38 -0.01 2.77 16 Total: -1.00 -74.46 330.08 2.84 -71.62 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.27 Total: 35.20 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 4.75 Total: -10.37 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.49 Total: -118.17 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.07 Total: -25.69 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Total: -74.46 2.84 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269130981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.624 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds