Wall clock time and date at job start Tue Mar 31 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.42905 * 307.53837 * 11 10 9 13 13 C 1.54885 * 110.48820 * 70.22427 * 11 10 9 14 14 C 1.54897 * 102.74561 * 156.62056 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05564 * 14 13 11 16 16 H 1.08997 * 110.07024 * 142.91810 * 15 14 13 17 17 N 1.46497 * 110.03489 * 264.32302 * 15 14 13 18 18 C 1.34774 * 120.00501 * 272.17509 * 17 15 14 19 19 O 1.21614 * 119.99677 * 359.97438 * 18 17 15 20 20 C 1.47376 * 120.00178 * 179.97438 * 18 17 15 21 21 C 1.47020 * 127.18996 * 179.70435 * 20 18 17 22 22 C 1.34183 * 105.95309 * 179.82907 * 21 20 18 23 23 O 1.34210 * 109.12145 * 0.43928 * 22 21 20 24 24 C 1.33651 * 110.91099 * 359.70446 * 23 22 21 25 25 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 1.08999 * 110.75700 * 274.92940 * 13 11 10 31 31 H 1.08990 * 110.75845 * 38.30867 * 13 11 10 32 32 H 1.09001 * 110.48410 * 203.37957 * 14 13 11 33 33 H 1.09004 * 110.48190 * 80.73453 * 14 13 11 34 34 H 0.97006 * 119.99774 * 92.16367 * 17 15 14 35 35 H 1.08001 * 127.02390 * 0.02562 * 21 20 18 36 36 H 1.07998 * 125.43567 * 180.14033 * 22 21 20 37 37 H 1.08001 * 125.79940 * 179.97438 * 24 23 22 38 38 H 1.09000 * 110.03023 * 240.71282 * 25 15 14 39 39 H 1.09001 * 110.02849 * 119.28285 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3431 -4.7088 0.7901 13 6 0.3387 -4.9052 -1.3862 14 6 -0.1120 -6.3861 -1.4418 15 6 1.0595 -7.1621 -0.8053 16 1 0.6788 -7.9927 -0.2109 17 7 1.9564 -7.6627 -1.8498 18 6 1.7229 -8.8605 -2.4216 19 8 0.7677 -9.5262 -2.0701 20 6 2.6250 -9.3637 -3.4728 21 6 2.5241 -10.6409 -4.1939 22 6 3.5550 -10.6622 -5.0525 23 8 4.2674 -9.5334 -4.9121 24 6 3.7314 -8.7444 -3.9759 25 6 1.8069 -6.1662 0.0987 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 -0.5231 -4.2381 -1.4087 31 1 1.0248 -4.6794 -2.2024 32 1 -0.2615 -6.7008 -2.4747 33 1 -1.0241 -6.5292 -0.8624 34 1 2.7185 -7.1318 -2.1300 35 1 1.7718 -11.4046 -4.0620 36 1 3.7788 -11.4622 -5.7425 37 1 4.1102 -7.7806 -3.6695 38 1 2.8371 -6.0552 -0.2398 39 1 1.7882 -6.5131 1.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284161147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:30 Heat of formation + Delta-G solvation = -21.871965 kcal Electronic energy + Delta-G solvation = -20904.470517 eV Core-core repulsion = 17620.477824 eV Total energy + Delta-G solvation = -3283.992692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.82763 -39.89721 -37.91796 -34.80537 -33.54621 -32.91682 -31.15060 -30.08662 -28.79111 -27.72208 -24.61512 -23.70790 -22.18453 -21.77304 -20.67892 -20.14812 -19.46391 -18.56703 -17.02905 -16.56550 -16.42192 -16.12194 -15.41379 -15.11730 -14.69574 -14.40227 -13.95080 -13.63878 -13.25893 -13.17700 -13.15590 -12.85080 -12.68418 -12.06957 -11.65911 -11.47174 -11.07842 -10.86642 -10.81004 -10.54801 -10.28348 -10.24851 -10.10975 -10.06984 -9.94212 -9.67175 -9.20864 -9.03588 -8.87120 -6.90933 -5.76439 -3.04677 1.07184 1.78678 2.60513 3.04585 3.21701 3.42817 3.48217 3.50645 4.28206 4.38837 4.57599 4.66892 4.78273 4.82358 5.05708 5.20492 5.35173 5.48068 5.55218 5.57710 5.60917 5.67053 5.76702 5.85724 5.91478 5.97026 6.07170 6.13353 6.26383 6.31454 6.50885 6.57357 6.59342 6.62616 6.80610 6.92594 7.39737 7.69915 8.11245 8.42745 9.53911 10.13035 10.47512 11.46590 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.003088 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.944358 B = 9064.293599 C = 9691.545230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.142 3.858 16 H 0.089 0.911 17 N -0.716 5.716 18 C 0.585 3.415 19 O -0.539 6.539 20 C -0.234 4.234 21 C -0.166 4.166 22 C -0.042 4.042 23 O -0.175 6.175 24 C 0.021 3.979 25 C -0.122 4.122 26 H 0.254 0.746 27 H 0.384 0.616 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.159 0.841 36 H 0.209 0.791 37 H 0.212 0.788 38 H 0.072 0.928 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.849 -20.937 -7.851 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.118 4.118 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.038 3.962 16 H 0.107 0.893 17 N -0.367 5.367 18 C 0.372 3.628 19 O -0.417 6.417 20 C -0.239 4.239 21 C -0.186 4.186 22 C -0.108 4.108 23 O -0.070 6.070 24 C -0.049 4.049 25 C -0.161 4.161 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.229 0.771 38 H 0.090 0.910 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.550 -21.238 -7.743 23.535 hybrid contribution 0.331 1.192 -0.056 1.239 sum 6.881 -20.045 -7.799 22.583 Atomic orbital electron populations 1.69669 1.05103 1.25499 1.57921 1.24743 0.95523 0.97686 1.03151 0.86129 0.78760 0.84193 0.77188 1.20588 1.21894 1.21886 1.19272 0.91017 0.84249 1.42420 0.91230 1.42364 1.05910 0.99959 1.89369 1.20683 0.93043 0.85413 0.97478 1.22186 0.97947 0.93624 0.98008 0.90412 1.22497 1.00489 0.94783 0.97101 1.22802 0.97558 0.95973 1.00893 1.21684 0.89996 0.96589 0.87928 0.89279 1.46088 1.30918 1.19459 1.40268 1.17285 0.83970 0.80914 0.80596 1.90782 1.30091 1.57635 1.63167 1.21612 0.99943 0.98308 1.04043 1.22802 1.00674 0.97573 0.97507 1.23960 0.93885 0.89588 1.03398 1.83799 1.48521 1.26696 1.47935 1.24511 0.93850 0.96407 0.90145 1.22457 0.99532 0.94653 0.99418 0.93581 0.78235 0.96523 0.96554 0.90982 0.91580 0.91667 0.90856 0.76800 0.82336 0.77494 0.77146 0.90976 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.30 5.49 -59.90 -0.33 -18.63 16 10 C 0.16 3.12 5.54 -4.04 -0.02 3.10 16 11 C -0.10 -1.51 2.89 -88.96 -0.26 -1.77 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.66 6.19 -24.74 -0.15 -1.81 16 14 C -0.13 -1.75 6.54 -25.07 -0.16 -1.92 16 15 C 0.14 1.71 3.25 -66.81 -0.22 1.50 16 16 H 0.09 1.16 7.56 -51.93 -0.39 0.77 16 17 N -0.72 -7.73 5.02 -53.81 -0.27 -8.00 16 18 C 0.58 7.47 7.81 -12.54 -0.10 7.37 16 19 O -0.54 -8.90 16.64 5.27 0.09 -8.81 16 20 C -0.23 -2.46 6.31 -103.28 -0.65 -3.11 16 21 C -0.17 -1.56 11.01 -37.45 -0.41 -1.97 16 22 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 23 O -0.17 -1.43 10.52 7.67 0.08 -1.35 16 24 C 0.02 0.17 11.61 30.07 0.35 0.52 16 25 C -0.12 -1.46 6.14 -25.61 -0.16 -1.61 16 26 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.38 10.12 7.64 -40.82 -0.31 9.81 16 28 H 0.02 0.32 8.02 -51.93 -0.42 -0.09 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 32 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.29 7.29 -40.82 -0.30 2.99 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.21 0.91 7.47 -52.49 -0.39 0.51 16 38 H 0.07 0.78 7.31 -51.93 -0.38 0.40 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -34.33 330.68 -6.95 -41.28 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.53 Total: 7.70 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.68 Total: -6.99 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.13 Total: -54.14 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.17 Total: -10.16 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.33 -6.95 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284161147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.411 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds