Wall clock time and date at job start Tue Mar 31 2020 00:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.42905 * 307.53837 * 11 10 9 13 13 C 1.54885 * 110.48820 * 70.22427 * 11 10 9 14 14 C 1.54897 * 102.74561 * 156.62056 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05564 * 14 13 11 16 16 H 1.08997 * 110.07024 * 142.91810 * 15 14 13 17 17 N 1.46497 * 110.03489 * 264.32302 * 15 14 13 18 18 C 1.34774 * 120.00501 * 272.17509 * 17 15 14 19 19 O 1.21614 * 119.99677 * 359.97438 * 18 17 15 20 20 C 1.47376 * 120.00178 * 179.97438 * 18 17 15 21 21 C 1.47020 * 127.18996 * 179.70435 * 20 18 17 22 22 C 1.34183 * 105.95309 * 179.82907 * 21 20 18 23 23 O 1.34210 * 109.12145 * 0.43928 * 22 21 20 24 24 C 1.33651 * 110.91099 * 359.70446 * 23 22 21 25 25 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 1.08999 * 110.75700 * 274.92940 * 13 11 10 31 31 H 1.08990 * 110.75845 * 38.30867 * 13 11 10 32 32 H 1.09001 * 110.48410 * 203.37957 * 14 13 11 33 33 H 1.09004 * 110.48190 * 80.73453 * 14 13 11 34 34 H 0.97006 * 119.99774 * 92.16367 * 17 15 14 35 35 H 1.08001 * 127.02390 * 0.02562 * 21 20 18 36 36 H 1.07998 * 125.43567 * 180.14033 * 22 21 20 37 37 H 1.08001 * 125.79940 * 179.97438 * 24 23 22 38 38 H 1.09000 * 110.03023 * 240.71282 * 25 15 14 39 39 H 1.09001 * 110.02849 * 119.28285 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3431 -4.7088 0.7901 13 6 0.3387 -4.9052 -1.3862 14 6 -0.1120 -6.3861 -1.4418 15 6 1.0595 -7.1621 -0.8053 16 1 0.6788 -7.9927 -0.2109 17 7 1.9564 -7.6627 -1.8498 18 6 1.7229 -8.8605 -2.4216 19 8 0.7677 -9.5262 -2.0701 20 6 2.6250 -9.3637 -3.4728 21 6 2.5241 -10.6409 -4.1939 22 6 3.5550 -10.6622 -5.0525 23 8 4.2674 -9.5334 -4.9121 24 6 3.7314 -8.7444 -3.9759 25 6 1.8069 -6.1662 0.0987 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 -0.5231 -4.2381 -1.4087 31 1 1.0248 -4.6794 -2.2024 32 1 -0.2615 -6.7008 -2.4747 33 1 -1.0241 -6.5292 -0.8624 34 1 2.7185 -7.1318 -2.1300 35 1 1.7718 -11.4046 -4.0620 36 1 3.7788 -11.4622 -5.7425 37 1 4.1102 -7.7806 -3.6695 38 1 2.8371 -6.0552 -0.2398 39 1 1.7882 -6.5131 1.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284161147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:29 Heat of formation + Delta-G solvation = -45.650555 kcal Electronic energy + Delta-G solvation = -20905.501634 eV Core-core repulsion = 17620.477824 eV Total energy + Delta-G solvation = -3285.023809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.45600 -40.91849 -39.09282 -36.44153 -34.80650 -33.78247 -32.85613 -30.85913 -30.11400 -28.93519 -26.27167 -24.67909 -23.88541 -22.39206 -21.60981 -21.22484 -20.60883 -19.33528 -19.00835 -17.53495 -17.10348 -17.04271 -16.63310 -16.41728 -15.84948 -15.58032 -15.41804 -14.99301 -14.73714 -14.46777 -14.21973 -13.82993 -13.50405 -13.33683 -13.12885 -12.82107 -12.71410 -12.50400 -12.11574 -12.06419 -11.87384 -11.60637 -11.53177 -11.45501 -11.11084 -10.89701 -10.84501 -10.11850 -9.71528 -8.95910 -7.93245 -5.21240 0.37428 1.14517 1.48578 1.49217 1.59255 2.01803 2.20982 2.33318 2.57780 3.40673 3.56791 3.60621 3.68151 3.79948 3.91265 4.14232 4.18632 4.44555 4.51818 4.52262 4.58546 4.61957 4.69864 4.77117 4.79739 4.93792 5.01564 5.04598 5.10728 5.16271 5.25432 5.33888 5.39007 5.49346 5.56607 5.60989 6.00818 6.29619 6.54218 7.20281 7.35742 8.14200 8.35898 9.30782 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.003088 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.944358 B = 9064.293599 C = 9691.545230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.092 4.092 12 H 0.066 0.934 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.149 3.851 16 H 0.082 0.918 17 N -0.704 5.704 18 C 0.584 3.416 19 O -0.586 6.586 20 C -0.271 4.271 21 C -0.199 4.199 22 C -0.024 4.024 23 O -0.178 6.178 24 C 0.043 3.957 25 C -0.108 4.108 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.153 0.847 36 H 0.247 0.753 37 H 0.246 0.754 38 H 0.091 0.909 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -21.510 -8.578 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.111 4.111 12 H 0.085 0.915 13 C -0.144 4.144 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.101 0.899 17 N -0.356 5.356 18 C 0.374 3.626 19 O -0.468 6.468 20 C -0.275 4.275 21 C -0.219 4.219 22 C -0.089 4.089 23 O -0.072 6.072 24 C -0.027 4.027 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.171 0.829 36 H 0.263 0.737 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.120 -21.826 -8.479 25.129 hybrid contribution -0.408 1.308 0.137 1.377 sum 8.712 -20.519 -8.341 23.801 Atomic orbital electron populations 1.69828 1.06673 1.25897 1.59853 1.25573 0.96378 1.01152 1.04010 0.85083 0.78344 0.79861 0.76545 1.18818 1.22174 1.22248 1.19696 0.91551 0.85409 1.40614 0.90488 1.42614 1.05679 1.01312 1.89267 1.20880 0.93641 0.84409 0.97719 1.22060 0.97235 0.94047 0.97740 0.91520 1.22396 0.99555 0.95462 0.96956 1.22714 0.98201 0.94725 1.00785 1.21514 0.89835 0.96164 0.88098 0.89945 1.45947 1.30973 1.19086 1.39569 1.17632 0.83597 0.80797 0.80620 1.90751 1.32207 1.59001 1.64836 1.21584 1.01279 0.99726 1.04956 1.22967 1.02091 0.97786 0.99055 1.24609 0.92300 0.89534 1.02483 1.83846 1.48563 1.27035 1.47784 1.25076 0.92264 0.96827 0.88558 1.22348 0.99837 0.92141 1.00343 0.94121 0.79535 0.95540 0.96183 0.93361 0.91628 0.92145 0.90830 0.75069 0.82878 0.73740 0.73797 0.89097 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -13.28 9.99 84.04 0.84 -12.44 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -37.23 5.49 -343.44 -1.89 -39.12 16 10 C 0.16 5.95 5.54 86.38 0.48 6.42 16 11 C -0.09 -2.71 2.89 -9.72 -0.03 -2.74 16 12 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 13 C -0.11 -3.13 6.19 31.89 0.20 -2.94 16 14 C -0.13 -3.24 6.54 31.67 0.21 -3.03 16 15 C 0.15 3.38 3.25 45.72 0.15 3.53 16 16 H 0.08 2.07 7.56 -2.39 -0.02 2.05 16 17 N -0.70 -14.01 5.02 -442.42 -2.22 -16.24 16 18 C 0.58 14.58 7.81 86.65 0.68 15.26 16 19 O -0.59 -19.72 16.64 -4.08 -0.07 -19.78 16 20 C -0.27 -5.37 6.31 -18.99 -0.12 -5.49 16 21 C -0.20 -3.59 11.01 23.65 0.26 -3.33 16 22 C -0.02 -0.28 12.03 66.89 0.80 0.52 16 23 O -0.18 -2.39 10.52 4.53 0.05 -2.34 16 24 C 0.04 0.56 11.61 67.39 0.78 1.34 16 25 C -0.11 -2.33 6.14 31.32 0.19 -2.14 16 26 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 27 H 0.37 20.02 7.64 -92.71 -0.71 19.31 16 28 H 0.03 0.96 8.02 -2.39 -0.02 0.94 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.93 7.96 -2.39 -0.02 1.91 16 32 H 0.06 1.62 8.04 -2.39 -0.02 1.61 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 5.64 7.29 -92.70 -0.68 4.96 16 35 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.25 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.25 1.12 7.47 -2.91 -0.02 1.10 16 38 H 0.09 1.65 7.31 -2.39 -0.02 1.63 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.07 330.68 2.77 -72.30 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.32 Total: 25.78 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.91 Total: -9.10 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.82 Total: -114.72 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.02 Total: -22.12 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.07 2.77 -72.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284161147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.645 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds