Wall clock time and date at job start Tue Mar 31 2020 00:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.08998 * 110.48342 * 80.73709 * 15 14 13 17 17 N 1.46498 * 110.59848 * 203.32368 * 15 14 13 18 18 C 1.34777 * 120.00044 * 269.83809 * 17 15 14 19 19 O 1.21611 * 120.00031 * 0.02562 * 18 17 15 20 20 C 1.47381 * 120.00143 * 179.97438 * 18 17 15 21 21 C 1.47017 * 127.19415 * 179.71259 * 20 18 17 22 22 C 1.34181 * 105.95481 * 179.89517 * 21 20 18 23 23 O 1.34216 * 109.12585 * 0.37480 * 22 21 20 24 24 C 1.33656 * 110.90526 * 359.74865 * 23 22 21 25 25 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 31 31 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 32 32 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 33 33 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 34 34 H 0.96997 * 120.00308 * 89.84738 * 17 15 14 35 35 H 1.08003 * 127.02561 * 0.02562 * 21 20 18 36 36 H 1.07998 * 125.43579 * 180.12708 * 22 21 20 37 37 H 1.07999 * 125.80437 * 180.02562 * 24 23 22 38 38 H 1.08996 * 110.03408 * 238.57457 * 25 11 10 39 39 H 1.09006 * 110.02846 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2620 -6.8283 1.8950 17 7 1.3396 -8.3894 0.8172 18 6 1.5528 -9.3226 1.7659 19 8 1.8670 -8.9851 2.8912 20 6 1.4039 -10.7522 1.4400 21 6 1.6019 -11.8950 2.3434 22 6 1.3538 -12.9915 1.6109 23 8 1.0358 -12.6223 0.3604 24 6 1.0593 -11.2918 0.2354 25 6 1.8158 -6.1562 -0.1283 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.8880 -4.3869 2.1254 31 1 -0.6711 -4.3893 1.2427 32 1 -0.6918 -6.7941 1.0645 33 1 0.0073 -6.5568 2.6985 34 1 1.0887 -8.6586 -0.0802 35 1 1.8867 -11.8593 3.3846 36 1 1.4059 -14.0090 1.9693 37 1 0.8419 -10.7379 -0.6659 38 1 1.4763 -6.6937 -1.0137 39 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284161150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:36 Heat of formation + Delta-G solvation = -47.883772 kcal Electronic energy + Delta-G solvation = -20757.829262 eV Core-core repulsion = 17472.708613 eV Total energy + Delta-G solvation = -3285.120649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.47278 -40.91737 -39.25767 -36.75439 -35.06532 -33.82853 -32.83710 -30.87762 -30.10661 -28.81799 -26.10088 -24.64379 -24.18736 -22.42250 -21.74689 -21.26983 -20.84071 -19.44813 -19.19720 -17.63892 -17.14003 -17.09002 -16.93226 -16.08725 -15.80494 -15.76927 -15.38604 -15.29830 -14.95284 -14.58872 -14.31586 -13.85821 -13.68681 -13.40298 -13.04480 -12.81670 -12.64333 -12.50644 -12.11332 -11.87239 -11.85147 -11.79710 -11.51483 -11.26162 -11.13874 -10.92501 -10.87166 -10.15761 -9.73401 -9.10917 -8.41495 -5.34476 0.35265 1.12199 1.57500 1.68368 1.82789 1.97527 2.15465 2.29447 2.70597 3.38137 3.48251 3.51640 3.64740 3.77432 3.79840 3.96684 4.11855 4.32576 4.40066 4.42738 4.52252 4.53618 4.59679 4.66042 4.75610 4.83558 4.95422 5.00000 5.02675 5.05546 5.15714 5.29682 5.31168 5.43433 5.49502 5.57927 5.98745 6.49183 6.51419 7.09616 7.17891 8.00606 8.11109 9.11055 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.056922 B = 0.002624 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.787085 B =10667.225816 C =10723.517274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.106 4.106 3 Si 1.131 2.869 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.291 1.291 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.756 5.756 10 C 0.162 3.838 11 C -0.088 4.088 12 H 0.077 0.923 13 C -0.111 4.111 14 C -0.122 4.122 15 C 0.147 3.853 16 H 0.071 0.929 17 N -0.701 5.701 18 C 0.583 3.417 19 O -0.590 6.590 20 C -0.273 4.273 21 C -0.202 4.202 22 C -0.022 4.022 23 O -0.177 6.177 24 C 0.049 3.951 25 C -0.107 4.107 26 H 0.245 0.755 27 H 0.362 0.638 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.416 0.584 35 H 0.150 0.850 36 H 0.246 0.754 37 H 0.252 0.748 38 H 0.103 0.897 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -28.690 -2.221 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.297 4.297 3 Si 0.955 3.045 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.217 1.217 7 C -0.468 4.468 8 H 0.082 0.918 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.160 4.160 15 C 0.042 3.958 16 H 0.089 0.911 17 N -0.352 5.352 18 C 0.372 3.628 19 O -0.471 6.471 20 C -0.277 4.277 21 C -0.222 4.222 22 C -0.087 4.087 23 O -0.071 6.071 24 C -0.022 4.022 25 C -0.145 4.145 26 H 0.055 0.945 27 H 0.194 0.806 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.268 0.732 38 H 0.122 0.878 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.679 -27.037 -1.675 27.141 hybrid contribution -0.207 -1.186 0.308 1.242 sum 1.472 -28.223 -1.367 28.294 Atomic orbital electron populations 1.70961 1.07105 1.27930 1.56327 1.27242 0.97181 1.04694 1.00549 0.82586 0.73562 0.71491 0.76834 1.21266 1.19818 1.21697 1.20431 0.92329 0.87324 1.46670 0.91831 1.42575 1.04882 1.01989 1.90609 1.20916 0.93788 0.84598 0.97161 1.21800 0.96934 0.93914 0.98044 0.90410 1.22237 0.99922 0.96021 0.96699 1.22782 0.97816 0.94466 1.00954 1.21689 0.97343 0.79241 0.97577 0.91054 1.45720 1.70171 1.05315 1.14038 1.17710 0.75638 0.85193 0.84218 1.90772 1.50014 1.83021 1.23300 1.21540 1.15861 0.93303 0.97016 1.22967 1.06856 0.90924 1.01433 1.24580 1.02422 1.01164 0.80579 1.83851 1.67871 1.23406 1.31961 1.25132 0.97121 0.80731 0.99201 1.22291 1.01116 0.93746 0.97380 0.94495 0.80606 0.96146 0.97049 0.93475 0.92187 0.89408 0.92633 0.74553 0.83213 0.73765 0.73192 0.87814 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.01 13.70 21.65 0.30 -61.72 16 2 C -0.11 -6.27 5.50 84.86 0.47 -5.80 16 3 Si 1.13 53.02 29.92 68.60 2.05 55.07 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.34 -19.51 9.99 84.03 0.84 -18.68 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.76 -39.15 5.45 -343.47 -1.87 -41.02 16 10 C 0.16 6.56 5.31 86.38 0.46 7.02 16 11 C -0.09 -2.65 2.96 -10.07 -0.03 -2.68 16 12 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.11 -3.45 6.08 31.67 0.19 -3.26 16 14 C -0.12 -3.09 6.58 31.89 0.21 -2.88 16 15 C 0.15 3.47 3.21 46.06 0.15 3.62 16 16 H 0.07 2.11 7.55 -2.39 -0.02 2.09 16 17 N -0.70 -12.87 5.15 -440.76 -2.27 -15.14 16 18 C 0.58 14.28 7.81 86.65 0.68 14.95 16 19 O -0.59 -20.50 16.63 -4.07 -0.07 -20.57 16 20 C -0.27 -5.03 6.31 -18.99 -0.12 -5.15 16 21 C -0.20 -3.50 11.01 23.65 0.26 -3.24 16 22 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 23 O -0.18 -1.98 10.52 4.42 0.05 -1.93 16 24 C 0.05 0.50 11.61 67.40 0.78 1.28 16 25 C -0.11 -2.34 6.19 31.32 0.19 -2.14 16 26 H 0.24 15.45 6.77 -92.71 -0.63 14.82 16 27 H 0.36 19.21 6.38 -92.71 -0.59 18.61 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.01 0.49 8.00 -2.39 -0.02 0.47 16 30 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.42 4.04 7.34 -92.71 -0.68 3.36 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.25 0.39 8.06 -2.91 -0.02 0.37 16 37 H 0.25 0.11 7.47 -2.91 -0.02 0.09 16 38 H 0.10 1.56 7.73 -2.39 -0.02 1.54 16 39 H 0.07 1.70 7.67 -2.38 -0.02 1.68 16 Total: -1.00 -81.32 328.65 3.01 -78.31 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.06 Total: 23.39 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.88 Total: -16.39 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.85 Total: -117.88 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.02 Total: -22.50 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 2.05 Total: 55.07 kcal Total: -81.32 3.01 -78.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284161150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.424 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds