Wall clock time and date at job start Tue Mar 31 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48504 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46982 * 299.99990 * 3 2 1 6 6 H 1.48491 * 109.47191 * 60.00569 * 3 2 1 7 7 C 1.38814 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00298 * 160.27702 * 7 2 1 9 9 N 1.36939 * 119.99756 * 340.26893 * 7 2 1 10 10 C 1.46492 * 120.00106 * 320.54080 * 9 7 2 11 11 C 1.52997 * 109.47364 * 269.99510 * 10 9 7 12 12 C 1.53002 * 109.47457 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46961 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99581 * 180.02562 * 13 12 11 15 15 O 1.21698 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.46660 * 120.00062 * 180.02562 * 14 13 12 17 17 C 1.36546 * 125.99087 * 179.97438 * 16 14 13 18 18 C 1.40360 * 106.70595 * 180.02562 * 17 16 14 19 19 C 1.35127 * 107.11848 * 0.02562 * 18 17 16 20 20 O 1.33927 * 108.76913 * 359.97438 * 19 18 17 21 21 C 1.46511 * 119.99695 * 140.53836 * 9 7 2 22 22 C 1.52998 * 117.49648 * 3.28943 * 21 9 7 23 23 C 1.52997 * 117.49604 * 294.66530 * 21 9 7 24 24 H 0.97003 * 119.99325 * 355.01153 * 1 2 3 25 25 H 1.09001 * 109.47118 * 149.99951 * 10 9 7 26 26 H 1.09000 * 109.47553 * 30.00246 * 10 9 7 27 27 H 1.09001 * 109.46643 * 60.00149 * 11 10 9 28 28 H 1.08994 * 109.47302 * 300.00374 * 11 10 9 29 29 H 1.09000 * 109.46945 * 59.99856 * 12 11 10 30 30 H 1.09006 * 109.46629 * 300.00203 * 12 11 10 31 31 H 0.96996 * 119.99889 * 359.97438 * 13 12 11 32 32 H 1.07994 * 126.64172 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.44139 * 180.02562 * 18 17 16 34 34 H 1.08003 * 125.61723 * 180.02562 * 19 18 17 35 35 H 1.08992 * 115.54424 * 149.00155 * 21 9 7 36 36 H 1.08989 * 117.50216 * 359.97438 * 22 21 9 37 37 H 1.09005 * 117.49376 * 145.02560 * 22 21 9 38 38 H 1.09000 * 117.50032 * 214.97723 * 23 21 9 39 39 H 1.09002 * 117.50317 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0427 -1.2295 -0.3162 9 7 1.3857 -2.3534 0.3993 10 6 0.4641 -2.3294 1.5378 11 6 1.2394 -2.6054 2.8276 12 6 0.2767 -2.5809 4.0165 13 7 1.0193 -2.8446 5.2516 14 6 0.3726 -2.8723 6.4337 15 8 -0.8280 -2.6778 6.4753 16 6 1.1160 -3.1357 7.6702 17 6 0.5874 -3.1910 8.9280 18 6 1.6514 -3.4657 9.8012 19 6 2.7689 -3.5642 9.0478 20 8 2.4422 -3.3650 7.7643 21 6 1.6394 -3.6092 -0.3115 22 6 2.6697 -3.5851 -1.4423 23 6 1.1792 -3.7020 -1.7677 24 1 -0.4849 0.8369 0.0731 25 1 -0.3003 -3.0946 1.4026 26 1 -0.0097 -1.3498 1.6011 27 1 2.0038 -1.8402 2.9627 28 1 1.7131 -3.5850 2.7642 29 1 -0.4874 -3.3463 3.8811 30 1 -0.1973 -1.6014 4.0800 31 1 1.9762 -3.0000 5.2184 32 1 -0.4487 -3.0507 9.1984 33 1 1.5888 -3.5773 10.8735 34 1 3.7618 -3.7705 9.4194 35 1 1.5775 -4.5130 0.2945 36 1 3.1585 -2.6351 -1.6577 37 1 3.2861 -4.4735 -1.5805 38 1 0.8151 -4.6671 -2.1199 39 1 0.6874 -2.8290 -2.1968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316912239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:01 Heat of formation + Delta-G solvation = 22.036343 kcal Electronic energy + Delta-G solvation = -20914.220288 eV Core-core repulsion = 17632.131603 eV Total energy + Delta-G solvation = -3282.088685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.84398 -39.34976 -37.12531 -35.39352 -33.64131 -33.21222 -31.72649 -30.30658 -29.13286 -25.59050 -23.99671 -22.59723 -21.91313 -21.41572 -21.01622 -20.29814 -19.65755 -18.47429 -16.51994 -16.47300 -16.36226 -15.70798 -15.38791 -15.06413 -14.63595 -14.09395 -14.00048 -13.46203 -13.26240 -13.19743 -12.89135 -12.65071 -12.20677 -11.92880 -11.55439 -11.04016 -10.84244 -10.75967 -10.68455 -10.35154 -10.27697 -10.17714 -9.99841 -9.64317 -9.57353 -9.25816 -9.10634 -8.77165 -8.49567 -6.55013 -5.80313 -3.47773 0.92788 2.15751 2.53982 3.16613 3.27216 3.32507 3.41554 3.43155 4.41861 4.53376 4.68837 4.85355 4.94521 5.15559 5.31211 5.42627 5.54715 5.61088 5.64457 5.75374 5.92138 5.97825 6.10012 6.12334 6.27294 6.28824 6.35864 6.50286 6.57076 6.65380 6.68031 6.73247 7.04399 7.08702 7.24879 7.53260 7.60605 7.77968 8.11746 8.47883 9.13404 9.74235 10.32983 11.14269 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.003676 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.019300 B = 7614.364792 C = 8176.610331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.016 3.984 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.552 5.552 10 C 0.155 3.845 11 C -0.147 4.147 12 C 0.119 3.881 13 N -0.712 5.712 14 C 0.596 3.404 15 O -0.524 6.524 16 C -0.072 4.072 17 C -0.127 4.127 18 C -0.226 4.226 19 C -0.011 4.011 20 O -0.163 6.163 21 C 0.120 3.880 22 C -0.196 4.196 23 C -0.221 4.221 24 H 0.255 0.745 25 H 0.030 0.970 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.404 0.596 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.209 0.791 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -7.852 15.202 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.004 4.004 13 N -0.362 5.362 14 C 0.381 3.619 15 O -0.402 6.402 16 C -0.124 4.124 17 C -0.147 4.147 18 C -0.245 4.245 19 C -0.081 4.081 20 O -0.058 6.058 21 C 0.011 3.989 22 C -0.234 4.234 23 C -0.262 4.262 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.239 0.761 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.125 -7.540 14.858 17.165 hybrid contribution 0.891 0.780 0.220 1.205 sum 5.016 -6.759 15.078 17.268 Atomic orbital electron populations 1.70066 1.05519 1.26148 1.50552 1.25247 0.94997 0.98800 0.99478 0.86382 0.79822 0.84083 0.77433 1.20001 1.21552 1.21322 1.19061 0.93314 0.85030 1.41694 0.91861 1.43353 1.50953 1.03152 1.29379 1.20753 0.90518 1.02761 0.83181 1.22480 0.99254 1.01462 0.95514 1.21576 0.95219 1.01720 0.81868 1.46111 1.12567 1.70855 1.06661 1.16607 0.86158 0.77779 0.81369 1.90887 1.12987 1.50489 1.85830 1.22294 0.81284 1.12094 0.96760 1.21980 1.01204 1.00815 0.90736 1.21857 0.92333 1.08993 1.01344 1.24402 1.00760 1.02621 0.80326 1.84083 1.24412 1.68163 1.29189 1.21233 1.00604 0.90608 0.86418 1.23011 0.92194 1.01741 1.06457 1.23343 0.96791 1.00928 1.05147 0.93519 0.95194 0.88641 0.91402 0.92986 0.91452 0.91006 0.76107 0.82254 0.82679 0.77415 0.89690 0.88523 0.90882 0.91325 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 11.50 55.49 0.64 -24.01 16 2 C 0.02 0.42 4.98 -17.43 -0.09 0.34 16 3 Si 0.89 21.02 29.60 -169.99 -5.03 15.99 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.83 8.47 -15.06 -0.13 -6.96 16 8 H 0.06 1.67 6.75 -52.48 -0.35 1.32 16 9 N -0.55 -13.18 2.75 -165.67 -0.46 -13.63 16 10 C 0.15 3.40 5.33 -4.05 -0.02 3.38 16 11 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 12 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 13 N -0.71 -10.35 5.55 -61.62 -0.34 -10.69 16 14 C 0.60 9.24 7.79 -12.86 -0.10 9.14 16 15 O -0.52 -9.72 16.86 5.19 0.09 -9.63 16 16 C -0.07 -0.94 7.13 -36.79 -0.26 -1.20 16 17 C -0.13 -1.45 10.62 -39.39 -0.42 -1.87 16 18 C -0.23 -1.95 10.87 -39.89 -0.43 -2.39 16 19 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 20 O -0.16 -1.83 10.40 4.99 0.05 -1.78 16 21 C 0.12 2.53 6.56 -67.93 -0.45 2.09 16 22 C -0.20 -3.84 9.80 -26.73 -0.26 -4.10 16 23 C -0.22 -4.52 10.36 -26.73 -0.28 -4.80 16 24 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 25 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.10 2.40 5.59 -51.93 -0.29 2.11 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.40 5.08 8.23 -40.82 -0.34 4.74 16 32 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.21 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.10 2.07 6.46 -51.94 -0.34 1.74 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -30.55 336.03 -7.76 -38.31 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.52 Total: 7.34 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.25 Total: -6.96 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.16 Total: -48.33 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.14 Total: -11.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.55 -7.76 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316912239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.351 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds