Wall clock time and date at job start Tue Mar 31 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48504 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46982 * 299.99990 * 3 2 1 6 6 H 1.48491 * 109.47191 * 60.00569 * 3 2 1 7 7 C 1.38814 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00298 * 160.27702 * 7 2 1 9 9 N 1.36939 * 119.99756 * 340.26893 * 7 2 1 10 10 C 1.46492 * 120.00106 * 320.54080 * 9 7 2 11 11 C 1.52997 * 109.47364 * 269.99510 * 10 9 7 12 12 C 1.53002 * 109.47457 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46961 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99581 * 180.02562 * 13 12 11 15 15 O 1.21698 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.46660 * 120.00062 * 180.02562 * 14 13 12 17 17 C 1.36546 * 125.99087 * 179.97438 * 16 14 13 18 18 C 1.40360 * 106.70595 * 180.02562 * 17 16 14 19 19 C 1.35127 * 107.11848 * 0.02562 * 18 17 16 20 20 O 1.33927 * 108.76913 * 359.97438 * 19 18 17 21 21 C 1.46511 * 119.99695 * 140.53836 * 9 7 2 22 22 C 1.52998 * 117.49648 * 3.28943 * 21 9 7 23 23 C 1.52997 * 117.49604 * 294.66530 * 21 9 7 24 24 H 0.97003 * 119.99325 * 355.01153 * 1 2 3 25 25 H 1.09001 * 109.47118 * 149.99951 * 10 9 7 26 26 H 1.09000 * 109.47553 * 30.00246 * 10 9 7 27 27 H 1.09001 * 109.46643 * 60.00149 * 11 10 9 28 28 H 1.08994 * 109.47302 * 300.00374 * 11 10 9 29 29 H 1.09000 * 109.46945 * 59.99856 * 12 11 10 30 30 H 1.09006 * 109.46629 * 300.00203 * 12 11 10 31 31 H 0.96996 * 119.99889 * 359.97438 * 13 12 11 32 32 H 1.07994 * 126.64172 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.44139 * 180.02562 * 18 17 16 34 34 H 1.08003 * 125.61723 * 180.02562 * 19 18 17 35 35 H 1.08992 * 115.54424 * 149.00155 * 21 9 7 36 36 H 1.08989 * 117.50216 * 359.97438 * 22 21 9 37 37 H 1.09005 * 117.49376 * 145.02560 * 22 21 9 38 38 H 1.09000 * 117.50032 * 214.97723 * 23 21 9 39 39 H 1.09002 * 117.50317 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0427 -1.2295 -0.3162 9 7 1.3857 -2.3534 0.3993 10 6 0.4641 -2.3294 1.5378 11 6 1.2394 -2.6054 2.8276 12 6 0.2767 -2.5809 4.0165 13 7 1.0193 -2.8446 5.2516 14 6 0.3726 -2.8723 6.4337 15 8 -0.8280 -2.6778 6.4753 16 6 1.1160 -3.1357 7.6702 17 6 0.5874 -3.1910 8.9280 18 6 1.6514 -3.4657 9.8012 19 6 2.7689 -3.5642 9.0478 20 8 2.4422 -3.3650 7.7643 21 6 1.6394 -3.6092 -0.3115 22 6 2.6697 -3.5851 -1.4423 23 6 1.1792 -3.7020 -1.7677 24 1 -0.4849 0.8369 0.0731 25 1 -0.3003 -3.0946 1.4026 26 1 -0.0097 -1.3498 1.6011 27 1 2.0038 -1.8402 2.9627 28 1 1.7131 -3.5850 2.7642 29 1 -0.4874 -3.3463 3.8811 30 1 -0.1973 -1.6014 4.0800 31 1 1.9762 -3.0000 5.2184 32 1 -0.4487 -3.0507 9.1984 33 1 1.5888 -3.5773 10.8735 34 1 3.7618 -3.7705 9.4194 35 1 1.5775 -4.5130 0.2945 36 1 3.1585 -2.6351 -1.6577 37 1 3.2861 -4.4735 -1.5805 38 1 0.8151 -4.6671 -2.1199 39 1 0.6874 -2.8290 -2.1968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316912239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:01 Heat of formation + Delta-G solvation = 2.903273 kcal Electronic energy + Delta-G solvation = -20915.049960 eV Core-core repulsion = 17632.131603 eV Total energy + Delta-G solvation = -3282.918357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.63907 -40.58151 -38.83987 -36.78527 -35.29559 -34.06701 -33.42123 -31.61131 -30.44571 -27.27226 -25.56559 -23.80214 -23.02064 -22.71109 -22.47919 -21.57621 -21.19767 -19.49262 -18.27281 -17.45431 -17.31709 -17.22551 -16.89196 -16.41650 -16.36150 -15.68580 -15.23564 -14.95521 -14.44482 -14.16118 -13.95216 -13.89177 -13.65114 -13.54392 -13.25369 -12.80775 -12.61232 -12.46551 -12.31320 -12.01174 -11.88828 -11.52680 -11.38258 -11.27318 -11.05194 -10.87768 -10.48771 -10.31976 -9.64578 -8.49378 -7.78149 -5.50770 0.01802 1.42668 1.43214 1.47053 1.55825 1.66246 2.07308 2.20671 2.49071 3.16753 3.41928 3.51029 3.72148 3.96047 4.10378 4.15544 4.25147 4.33774 4.46703 4.54988 4.60232 4.61863 4.75211 4.87302 4.91745 4.95476 4.96328 5.07596 5.10175 5.28559 5.37658 5.40902 5.46412 5.57308 5.68838 5.81991 5.84441 6.40802 6.47682 6.95886 7.16869 7.85062 8.37197 9.11007 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.003676 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.019300 B = 7614.364792 C = 8176.610331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.032 4.032 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.260 4.260 8 H 0.059 0.941 9 N -0.569 5.569 10 C 0.154 3.846 11 C -0.123 4.123 12 C 0.131 3.869 13 N -0.705 5.705 14 C 0.595 3.405 15 O -0.566 6.566 16 C -0.110 4.110 17 C -0.125 4.125 18 C -0.233 4.233 19 C 0.011 3.989 20 O -0.172 6.172 21 C 0.102 3.898 22 C -0.180 4.180 23 C -0.221 4.221 24 H 0.250 0.750 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.415 0.585 32 H 0.158 0.842 33 H 0.186 0.814 34 H 0.257 0.743 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.274 -9.526 16.902 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.390 4.390 8 H 0.077 0.923 9 N -0.287 5.287 10 C 0.028 3.972 11 C -0.163 4.163 12 C 0.007 3.993 13 N -0.355 5.355 14 C 0.382 3.618 15 O -0.447 6.447 16 C -0.162 4.162 17 C -0.146 4.146 18 C -0.252 4.252 19 C -0.058 4.058 20 O -0.068 6.068 21 C -0.006 4.006 22 C -0.218 4.218 23 C -0.262 4.262 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.252 0.748 32 H 0.176 0.824 33 H 0.203 0.797 34 H 0.273 0.727 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.504 -9.235 16.556 20.043 hybrid contribution 0.221 1.211 -0.240 1.254 sum 6.725 -8.024 16.316 19.386 Atomic orbital electron populations 1.70189 1.06771 1.26330 1.52445 1.25872 0.95564 1.01438 1.00113 0.85498 0.79212 0.80722 0.76774 1.18922 1.22147 1.21557 1.19220 0.93198 0.86124 1.40456 0.92299 1.43566 1.51010 1.03644 1.30455 1.20653 0.90871 1.01003 0.84676 1.22118 0.98386 1.01915 0.93895 1.21265 0.94930 1.00743 0.82315 1.45921 1.12966 1.70668 1.05932 1.16902 0.85898 0.76788 0.82164 1.90850 1.14780 1.52508 1.86603 1.21774 0.82415 1.16041 0.95951 1.22271 1.02070 0.99344 0.90920 1.22229 0.91349 1.08943 1.02676 1.25439 1.02504 0.99048 0.78846 1.84070 1.23265 1.68456 1.30999 1.21567 1.01756 0.90358 0.86907 1.23014 0.91832 1.02262 1.04662 1.23253 0.97544 1.00826 1.04593 0.94068 0.94894 0.92082 0.92656 0.91024 0.91308 0.93043 0.74815 0.82409 0.79662 0.72740 0.86817 0.90832 0.87027 0.88155 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.94 11.50 21.65 0.25 -52.70 16 2 C -0.03 -1.74 4.98 84.86 0.42 -1.32 16 3 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -13.72 8.47 84.03 0.71 -13.01 16 8 H 0.06 3.12 6.75 -2.91 -0.02 3.10 16 9 N -0.57 -27.25 2.75 -678.05 -1.86 -29.11 16 10 C 0.15 6.90 5.33 86.38 0.46 7.36 16 11 C -0.12 -4.37 5.65 30.59 0.17 -4.20 16 12 C 0.13 4.37 5.67 86.38 0.49 4.86 16 13 N -0.70 -20.46 5.55 -467.08 -2.59 -23.06 16 14 C 0.59 18.74 7.79 86.44 0.67 19.42 16 15 O -0.57 -21.79 16.86 -4.34 -0.07 -21.87 16 16 C -0.11 -2.81 7.13 24.07 0.17 -2.64 16 17 C -0.13 -2.71 10.62 22.39 0.24 -2.48 16 18 C -0.23 -3.28 10.87 22.07 0.24 -3.04 16 19 C 0.01 0.13 12.08 67.10 0.81 0.94 16 20 O -0.17 -3.50 10.40 -5.07 -0.05 -3.55 16 21 C 0.10 4.14 6.56 44.99 0.30 4.44 16 22 C -0.18 -6.68 9.80 30.60 0.30 -6.38 16 23 C -0.22 -8.80 10.36 30.59 0.32 -8.49 16 24 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 25 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 26 H 0.06 3.20 5.59 -2.39 -0.01 3.19 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.42 10.10 8.23 -92.71 -0.76 9.34 16 32 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.26 0.43 8.06 -2.91 -0.02 0.41 16 35 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 36 H 0.07 3.09 6.46 -2.39 -0.02 3.08 16 37 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.05 2.47 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.84 336.03 3.29 -65.55 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.29 Total: 23.16 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.30 Total: -4.53 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.21 Total: -104.86 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.13 Total: -25.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.84 3.29 -65.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316912239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.452 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds