Wall clock time and date at job start Tue Mar 31 2020 00:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48506 * 109.47138 * 240.00166 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47249 * 120.00428 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99781 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47106 * 180.02562 * 10 9 7 12 12 C 1.30996 * 120.00080 * 124.99785 * 11 10 9 13 13 C 1.50701 * 120.00080 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47174 * 125.00078 * 13 12 11 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 15 20 20 C 1.34507 * 125.79432 * 89.71686 * 19 18 17 21 21 C 1.41381 * 106.84445 * 179.88676 * 20 19 18 22 22 C 1.34510 * 106.83649 * 0.37177 * 21 20 19 23 23 O 1.34300 * 108.42526 * 359.77098 * 22 21 20 24 24 H 0.96997 * 119.99626 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00312 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47016 * 60.00417 * 10 9 7 27 27 H 1.09003 * 109.47250 * 300.00230 * 10 9 7 28 28 H 1.08005 * 119.99573 * 305.00288 * 11 10 9 29 29 H 1.07995 * 120.00250 * 0.02562 * 12 11 10 30 30 H 1.09002 * 109.47060 * 5.00208 * 13 12 11 31 31 H 1.09001 * 109.47380 * 245.00120 * 13 12 11 32 32 H 0.97005 * 120.00266 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 34 34 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 35 35 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 36 36 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 37 37 H 1.08004 * 126.57405 * 0.02562 * 20 19 18 38 38 H 1.07996 * 126.58002 * 180.16341 * 21 20 19 39 39 H 1.08007 * 125.78832 * 179.75711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9307 13 6 0.1684 -6.8678 -0.9316 14 7 -0.5071 -6.9315 -2.2300 15 6 -1.4320 -7.8839 -2.4625 16 8 -1.7053 -8.6879 -1.5967 17 6 -2.1264 -7.9497 -3.7984 18 6 -3.1211 -9.1122 -3.7993 19 6 -3.8151 -9.1784 -5.1354 20 6 -3.3951 -9.8753 -6.2064 21 6 -4.3415 -9.6574 -7.2339 22 6 -5.2789 -8.8337 -6.7318 23 8 -4.9550 -8.5468 -5.4604 24 1 -0.4849 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 2.6847 -3.7145 0.8895 27 1 2.6848 -3.7145 -0.8905 28 1 0.3198 -4.8641 0.7647 29 1 1.9072 -5.6609 -1.6963 30 1 -0.5703 -6.7147 -0.1449 31 1 0.7011 -7.8019 -0.7531 32 1 -0.2882 -6.2886 -2.9227 33 1 -1.3875 -8.1027 -4.5849 34 1 -2.6593 -7.0158 -3.9772 35 1 -2.5885 -10.0463 -3.6203 36 1 -3.8600 -8.9589 -3.0128 37 1 -2.5066 -10.4862 -6.2687 38 1 -4.3149 -10.0701 -8.2315 39 1 -6.1451 -8.4652 -7.2614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320965788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:51 Heat of formation + Delta-G solvation = -4.071895 kcal Electronic energy + Delta-G solvation = -19625.912469 eV Core-core repulsion = 16342.691646 eV Total energy + Delta-G solvation = -3283.220823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.82436 -39.81287 -36.37455 -34.78394 -34.28916 -33.07553 -32.81814 -30.68092 -29.25849 -27.20056 -24.94998 -23.68252 -22.02120 -21.90272 -20.78579 -20.46217 -19.41436 -17.81044 -17.13863 -17.00601 -16.29975 -15.97216 -15.89686 -14.95320 -14.66012 -14.39356 -14.02194 -13.56510 -13.39633 -13.27405 -13.09891 -12.93631 -12.87100 -12.54561 -12.31560 -12.02506 -11.84239 -11.38263 -11.05438 -10.82595 -10.65940 -10.21511 -10.14609 -10.06529 -9.82134 -9.28931 -9.01465 -8.76995 -8.70195 -6.97505 -5.80107 -3.09928 1.44142 2.23447 2.34736 2.52599 2.71483 3.34985 3.42079 3.46344 3.47652 4.34343 4.57283 4.58710 4.67472 4.76321 4.80692 4.91128 5.00071 5.22413 5.25471 5.39549 5.52659 5.53868 5.59477 5.64555 5.70576 5.78050 5.87646 5.97468 6.10985 6.22586 6.30732 6.44723 6.54653 6.87414 6.87555 7.11939 7.41509 7.65467 8.10503 8.38238 9.49394 10.05507 10.40783 11.42538 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002334 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.690066 B =11991.573975 C =12945.272390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.106 4.106 12 C -0.203 4.203 13 C 0.155 3.845 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.546 6.546 17 C -0.139 4.139 18 C -0.024 4.024 19 C -0.008 4.008 20 C -0.211 4.211 21 C -0.215 4.215 22 C -0.044 4.044 23 O -0.175 6.175 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.031 0.969 27 H 0.025 0.975 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 -20.396 -12.831 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.125 4.125 12 C -0.222 4.222 13 C 0.032 3.968 14 N -0.375 5.375 15 C 0.299 3.701 16 O -0.424 6.424 17 C -0.179 4.179 18 C -0.062 4.062 19 C -0.059 4.059 20 C -0.231 4.231 21 C -0.234 4.234 22 C -0.111 4.111 23 O -0.071 6.071 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.239 0.761 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.772 -20.654 -11.990 24.823 hybrid contribution 0.332 1.199 -0.660 1.408 sum -6.440 -19.455 -12.649 24.082 Atomic orbital electron populations 1.69659 1.05147 1.25891 1.57421 1.24773 0.95570 0.97788 1.02823 0.86228 0.78499 0.83324 0.77888 1.21212 1.21626 1.21184 1.19198 0.91050 0.84023 1.43174 0.91110 1.42290 1.05941 0.99552 1.89617 1.19830 0.92620 0.84586 0.98447 1.23344 0.98232 0.93967 0.96987 1.22690 1.01015 0.97077 1.01419 1.20323 0.93899 0.97606 0.84979 1.46082 1.41089 1.33124 1.17158 1.20546 0.79410 0.80629 0.89487 1.90709 1.64165 1.40594 1.46922 1.21677 0.99349 1.01056 0.95802 1.19841 0.96724 0.99735 0.89863 1.22482 0.87464 0.97963 0.97950 1.21627 1.02705 1.05590 0.93132 1.21845 0.96706 1.03618 1.01231 1.24053 1.02091 1.02104 0.82887 1.84045 1.36375 1.57921 1.28747 0.93373 0.78136 0.95124 0.95676 0.87262 0.86753 0.91193 0.91095 0.76097 0.88308 0.88229 0.88003 0.89122 0.83453 0.83513 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.54 5.59 -61.08 -0.34 -18.88 16 10 C 0.17 3.42 6.70 -5.19 -0.03 3.38 16 11 C -0.11 -1.69 9.24 -36.02 -0.33 -2.03 16 12 C -0.20 -2.69 9.24 -36.02 -0.33 -3.02 16 13 C 0.15 1.90 6.11 -5.20 -0.03 1.87 16 14 N -0.72 -7.92 5.55 -61.47 -0.34 -8.26 16 15 C 0.51 5.90 7.83 -10.98 -0.09 5.82 16 16 O -0.55 -8.22 15.98 5.56 0.09 -8.13 16 17 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16 18 C -0.02 -0.21 5.04 -27.88 -0.14 -0.35 16 19 C -0.01 -0.08 6.57 -35.62 -0.23 -0.31 16 20 C -0.21 -1.84 10.81 -39.71 -0.43 -2.27 16 21 C -0.21 -1.71 10.91 -39.70 -0.43 -2.15 16 22 C -0.04 -0.34 12.09 29.41 0.36 0.01 16 23 O -0.17 -1.79 10.65 5.71 0.06 -1.73 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.39 10.29 7.66 -40.82 -0.31 9.98 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.11 1.72 7.84 -52.48 -0.41 1.31 16 29 H 0.11 1.43 7.84 -52.49 -0.41 1.01 16 30 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.20 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -33.66 343.88 -7.39 -41.05 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.64 Total: 8.83 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.10 Total: -7.82 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.04 Total: -54.65 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.15 Total: -9.86 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.66 -7.39 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320965788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.982 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds