Wall clock time and date at job start Tue Mar 31 2020 00:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48506 * 109.47138 * 240.00166 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47249 * 120.00428 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99781 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47106 * 180.02562 * 10 9 7 12 12 C 1.30996 * 120.00080 * 124.99785 * 11 10 9 13 13 C 1.50701 * 120.00080 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47174 * 125.00078 * 13 12 11 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 15 20 20 C 1.34507 * 125.79432 * 89.71686 * 19 18 17 21 21 C 1.41381 * 106.84445 * 179.88676 * 20 19 18 22 22 C 1.34510 * 106.83649 * 0.37177 * 21 20 19 23 23 O 1.34300 * 108.42526 * 359.77098 * 22 21 20 24 24 H 0.96997 * 119.99626 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00312 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47016 * 60.00417 * 10 9 7 27 27 H 1.09003 * 109.47250 * 300.00230 * 10 9 7 28 28 H 1.08005 * 119.99573 * 305.00288 * 11 10 9 29 29 H 1.07995 * 120.00250 * 0.02562 * 12 11 10 30 30 H 1.09002 * 109.47060 * 5.00208 * 13 12 11 31 31 H 1.09001 * 109.47380 * 245.00120 * 13 12 11 32 32 H 0.97005 * 120.00266 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 34 34 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 35 35 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 36 36 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 37 37 H 1.08004 * 126.57405 * 0.02562 * 20 19 18 38 38 H 1.07996 * 126.58002 * 180.16341 * 21 20 19 39 39 H 1.08007 * 125.78832 * 179.75711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9307 13 6 0.1684 -6.8678 -0.9316 14 7 -0.5071 -6.9315 -2.2300 15 6 -1.4320 -7.8839 -2.4625 16 8 -1.7053 -8.6879 -1.5967 17 6 -2.1264 -7.9497 -3.7984 18 6 -3.1211 -9.1122 -3.7993 19 6 -3.8151 -9.1784 -5.1354 20 6 -3.3951 -9.8753 -6.2064 21 6 -4.3415 -9.6574 -7.2339 22 6 -5.2789 -8.8337 -6.7318 23 8 -4.9550 -8.5468 -5.4604 24 1 -0.4849 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 2.6847 -3.7145 0.8895 27 1 2.6848 -3.7145 -0.8905 28 1 0.3198 -4.8641 0.7647 29 1 1.9072 -5.6609 -1.6963 30 1 -0.5703 -6.7147 -0.1449 31 1 0.7011 -7.8019 -0.7531 32 1 -0.2882 -6.2886 -2.9227 33 1 -1.3875 -8.1027 -4.5849 34 1 -2.6593 -7.0158 -3.9772 35 1 -2.5885 -10.0463 -3.6203 36 1 -3.8600 -8.9589 -3.0128 37 1 -2.5066 -10.4862 -6.2687 38 1 -4.3149 -10.0701 -8.2315 39 1 -6.1451 -8.4652 -7.2614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320965788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:50 Heat of formation + Delta-G solvation = -26.670921 kcal Electronic energy + Delta-G solvation = -19626.892436 eV Core-core repulsion = 16342.691646 eV Total energy + Delta-G solvation = -3284.200791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.46226 -40.76974 -37.70879 -36.26004 -35.04907 -34.39332 -33.68338 -32.42720 -30.08171 -28.51721 -26.24768 -24.97123 -23.47127 -22.64092 -21.66603 -21.20468 -20.63113 -19.12885 -18.51164 -17.81203 -17.15479 -16.88457 -16.78593 -16.60556 -15.79696 -15.44975 -15.31408 -15.16487 -14.69936 -14.52981 -14.01825 -13.70204 -13.56937 -13.45319 -13.38742 -13.19635 -13.00848 -12.85700 -12.70148 -12.23952 -12.06805 -11.98907 -11.79197 -11.13635 -10.99043 -10.81836 -10.34692 -9.95976 -9.35914 -9.02088 -7.96519 -5.26611 0.79992 1.07240 1.48103 1.51237 1.57579 1.61541 1.72848 2.09019 2.46586 2.56957 3.37142 3.63951 3.74649 3.90531 4.05057 4.09083 4.17062 4.18551 4.23481 4.33926 4.48145 4.57679 4.69048 4.73838 4.77155 4.92589 4.96504 4.99642 5.00844 5.09626 5.26794 5.37605 5.46849 5.65114 5.66471 5.84083 6.24834 6.25526 6.53399 7.21443 7.31485 8.05765 8.29598 9.26810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002334 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.690066 B =11991.573975 C =12945.272390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.160 4.160 13 C 0.156 3.844 14 N -0.718 5.718 15 C 0.513 3.487 16 O -0.585 6.585 17 C -0.128 4.128 18 C -0.020 4.020 19 C -0.028 4.028 20 C -0.215 4.215 21 C -0.227 4.227 22 C -0.048 4.048 23 O -0.197 6.197 24 H 0.252 0.748 25 H 0.374 0.626 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 -20.954 -14.508 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.047 3.953 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.033 3.967 14 N -0.370 5.370 15 C 0.301 3.699 16 O -0.465 6.465 17 C -0.168 4.168 18 C -0.057 4.057 19 C -0.078 4.078 20 C -0.234 4.234 21 C -0.246 4.246 22 C -0.115 4.115 23 O -0.094 6.094 24 H 0.061 0.939 25 H 0.206 0.794 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.881 -21.233 -13.684 25.936 hybrid contribution 0.077 1.234 -0.195 1.251 sum -5.804 -19.999 -13.879 25.026 Atomic orbital electron populations 1.69822 1.06708 1.26291 1.59251 1.25639 0.96461 1.01323 1.03483 0.85157 0.77165 0.78794 0.78312 1.20111 1.22149 1.20327 1.19645 0.91644 0.85225 1.41653 0.90354 1.42533 1.05693 1.00952 1.89565 1.19916 0.93170 0.83682 0.98488 1.23008 0.98870 0.94350 0.99102 1.22790 1.00040 0.95460 0.99663 1.20226 0.93566 0.97428 0.85488 1.46008 1.40811 1.33295 1.16847 1.21058 0.78950 0.79802 0.90117 1.90696 1.65324 1.42103 1.48383 1.21649 0.99527 1.01199 0.94390 1.19759 0.96467 1.00073 0.89417 1.22566 0.87866 0.98993 0.98336 1.21935 1.03260 1.05174 0.93072 1.22193 0.96526 1.03781 1.02078 1.24768 1.02902 1.01672 0.82123 1.84031 1.36825 1.58534 1.29982 0.93916 0.79431 0.95243 0.94833 0.87570 0.85104 0.92424 0.90153 0.74796 0.85830 0.87494 0.87800 0.90682 0.82051 0.81519 0.75158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.98 45.76 29.55 68.60 2.03 47.78 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -37.98 5.59 -347.17 -1.94 -39.93 16 10 C 0.17 6.76 6.70 85.63 0.57 7.34 16 11 C -0.13 -4.19 9.24 25.65 0.24 -3.95 16 12 C -0.16 -3.94 9.24 25.65 0.24 -3.70 16 13 C 0.16 3.60 6.11 85.63 0.52 4.12 16 14 N -0.72 -14.45 5.55 -466.79 -2.59 -17.04 16 15 C 0.51 11.21 7.83 87.66 0.69 11.90 16 16 O -0.58 -17.41 15.98 -3.02 -0.05 -17.46 16 17 C -0.13 -1.94 5.68 29.85 0.17 -1.77 16 18 C -0.02 -0.34 5.04 29.85 0.15 -0.19 16 19 C -0.03 -0.51 6.57 24.83 0.16 -0.34 16 20 C -0.22 -3.42 10.81 22.19 0.24 -3.18 16 21 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 22 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 23 O -0.20 -3.88 10.65 -2.49 -0.03 -3.91 16 24 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.37 20.37 7.66 -92.71 -0.71 19.66 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 1.26 7.79 -2.39 -0.02 1.24 16 28 H 0.11 3.38 7.84 -2.91 -0.02 3.35 16 29 H 0.13 2.84 7.84 -2.91 -0.02 2.82 16 30 H 0.06 1.51 7.79 -2.39 -0.02 1.49 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 6.58 8.46 -92.70 -0.78 5.80 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.70 8.10 -2.39 -0.02 1.69 16 36 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -72.29 343.88 2.60 -69.68 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.44 Total: 29.78 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.34 Total: -9.68 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -4.25 Total: -116.20 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.29 2.60 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320965788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.013 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds