Wall clock time and date at job start Tue Mar 31 2020 00:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48497 * 109.47067 * 269.99488 * 3 2 1 5 5 H 1.48496 * 109.47362 * 29.99977 * 3 2 1 6 6 H 1.48509 * 109.47208 * 149.99903 * 3 2 1 7 7 C 1.38811 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99493 * 0.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.53003 * 109.46894 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47220 * 180.02562 * 18 17 15 20 20 C 1.34512 * 125.78867 * 89.71180 * 19 18 17 21 21 C 1.41381 * 106.84363 * 179.88996 * 20 19 18 22 22 C 1.34517 * 106.83466 * 0.37691 * 21 20 19 23 23 O 1.34297 * 125.79054 * 270.02332 * 19 18 17 24 24 H 0.97000 * 119.99724 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 27 27 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 28 28 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 29 29 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 30 30 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 31 31 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 32 32 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 33 33 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 34 34 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 35 35 H 1.09000 * 109.47172 * 300.00050 * 18 17 15 36 36 H 1.09001 * 109.47010 * 59.99725 * 18 17 15 37 37 H 1.08004 * 126.57795 * 0.03020 * 20 19 18 38 38 H 1.07995 * 126.58751 * 180.16352 * 21 20 19 39 39 H 1.08001 * 125.78565 * 179.74824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0023 12 6 6.3618 -2.7477 0.9087 13 6 5.7978 -3.7877 1.8421 14 7 6.6352 -4.9890 1.7980 15 6 6.3181 -6.0595 2.5528 16 8 5.3424 -6.0267 3.2723 17 6 7.1761 -7.2975 2.5026 18 6 6.6000 -8.3557 3.4457 19 6 7.4582 -9.5935 3.3960 20 6 8.5218 -9.8453 4.1802 21 6 9.0228 -11.1106 3.7971 22 6 8.2404 -11.5526 2.7961 23 8 7.2945 -10.6296 2.5575 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3621 0.0014 26 1 3.8491 -3.0423 -0.8891 27 1 3.8484 -3.0427 0.8909 28 1 6.0224 -1.5431 -0.7440 29 1 7.3991 -2.4574 0.9869 30 1 4.7832 -4.0404 1.5341 31 1 5.7814 -3.3934 2.8582 32 1 7.4155 -5.0154 1.2222 33 1 7.1914 -7.6880 1.4851 34 1 8.1912 -7.0488 2.8118 35 1 6.5843 -7.9656 4.4633 36 1 5.5849 -8.6043 3.1362 37 1 8.9159 -9.2048 4.9554 38 1 9.8727 -11.6224 4.2236 39 1 8.3540 -12.4906 2.2728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320965789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:53 Heat of formation + Delta-G solvation = 9.348793 kcal Electronic energy + Delta-G solvation = -19883.249555 eV Core-core repulsion = 16600.610697 eV Total energy + Delta-G solvation = -3282.638859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.85791 -39.82050 -36.78896 -34.70697 -34.29928 -33.10646 -32.84066 -30.88846 -29.32455 -26.95318 -25.35807 -24.02923 -22.07575 -22.05170 -20.77369 -20.40911 -18.99420 -17.85866 -17.46609 -16.67632 -16.43826 -16.20172 -15.88621 -15.15612 -14.67088 -14.37673 -14.16798 -13.76220 -13.35555 -13.13044 -13.10482 -12.96880 -12.86232 -12.67686 -12.48268 -12.27286 -11.95041 -11.40123 -11.23366 -10.86948 -10.54808 -10.24213 -10.13628 -10.05062 -9.60394 -9.29401 -9.08805 -8.76840 -8.67560 -7.23229 -5.76934 -3.13314 1.40902 2.11156 2.30526 2.54828 2.67930 3.31217 3.37526 3.39936 3.45337 4.32132 4.55526 4.58837 4.65115 4.73206 4.77685 4.87524 4.96576 5.16286 5.21611 5.36959 5.50742 5.51238 5.55359 5.62404 5.63389 5.68292 5.78524 5.85707 6.05384 6.19483 6.23371 6.42596 6.46821 6.74496 6.84284 7.00282 7.40785 7.98539 8.13298 8.41559 9.19897 9.91775 10.11269 11.41197 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.002314 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.847212 B =12095.623091 C =12390.405810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.118 4.118 12 C -0.194 4.194 13 C 0.138 3.862 14 N -0.724 5.724 15 C 0.510 3.490 16 O -0.537 6.537 17 C -0.136 4.136 18 C -0.026 4.026 19 C -0.007 4.007 20 C -0.212 4.212 21 C -0.215 4.215 22 C -0.045 4.045 23 O -0.175 6.175 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.060 -19.700 5.089 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.040 3.960 11 C -0.138 4.138 12 C -0.213 4.213 13 C 0.015 3.985 14 N -0.376 5.376 15 C 0.296 3.704 16 O -0.414 6.414 17 C -0.176 4.176 18 C -0.064 4.064 19 C -0.057 4.057 20 C -0.231 4.231 21 C -0.234 4.234 22 C -0.113 4.113 23 O -0.071 6.071 24 H 0.070 0.930 25 H 0.194 0.806 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 21.854 -19.762 5.404 29.955 hybrid contribution 1.320 1.210 -0.208 1.803 sum 23.174 -18.551 5.197 30.136 Atomic orbital electron populations 1.69707 1.05083 1.25872 1.57343 1.24687 0.95275 0.97271 1.01926 0.86519 0.79232 0.84878 0.77744 1.21051 1.21651 1.20307 1.19067 0.80409 0.94879 1.43248 0.89102 1.42617 1.03959 1.01878 1.91211 1.19980 0.86497 0.89977 0.99587 1.23322 0.96816 0.97717 0.95928 1.22635 1.00184 1.00443 0.98044 1.20590 0.95134 0.83167 0.99564 1.46029 1.30927 1.14907 1.45698 1.20536 0.85686 0.84375 0.79837 1.90756 1.28087 1.82629 1.39924 1.21657 1.00250 0.93310 1.02429 1.19864 0.97913 0.86821 1.01764 1.22496 0.99278 0.90589 0.93360 1.21635 0.98661 0.98667 1.04154 1.21847 1.03420 0.97412 1.00687 1.24045 0.90818 0.95193 1.01197 1.84041 1.46931 1.25476 1.50660 0.93002 0.80550 0.94530 0.93889 0.86911 0.86974 0.89134 0.90958 0.76675 0.88433 0.88452 0.87897 0.88981 0.83444 0.83529 0.78178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.66 13.97 55.49 0.78 -28.89 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 22.28 27.74 -169.99 -4.71 17.56 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.25 -7.12 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.15 5.40 -61.08 -0.33 -18.48 16 10 C 0.17 3.21 6.35 -5.19 -0.03 3.18 16 11 C -0.12 -1.75 9.63 -36.03 -0.35 -2.10 16 12 C -0.19 -2.38 9.63 -36.03 -0.35 -2.73 16 13 C 0.14 1.82 5.76 -5.19 -0.03 1.79 16 14 N -0.72 -7.48 5.55 -61.47 -0.34 -7.82 16 15 C 0.51 5.85 7.83 -10.99 -0.09 5.76 16 16 O -0.54 -8.59 15.98 5.56 0.09 -8.50 16 17 C -0.14 -1.05 5.68 -27.88 -0.16 -1.21 16 18 C -0.03 -0.23 5.04 -27.88 -0.14 -0.37 16 19 C -0.01 -0.06 6.57 -35.63 -0.23 -0.30 16 20 C -0.21 -1.76 10.81 -39.70 -0.43 -2.19 16 21 C -0.21 -1.60 10.91 -39.70 -0.43 -2.04 16 22 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 23 O -0.18 -1.70 10.65 5.73 0.06 -1.64 16 24 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 25 H 0.36 8.47 5.52 -40.82 -0.23 8.24 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.86 5.29 -51.93 -0.27 0.58 16 28 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.09 1.43 5.30 -51.93 -0.28 1.15 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 2.85 8.46 -40.82 -0.35 2.50 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.20 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -35.43 336.28 -6.89 -42.32 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.36 Total: 7.79 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.14 Total: -7.42 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.10 Total: -55.19 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.15 Total: -10.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.43 -6.89 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320965789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.669 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds