Wall clock time and date at job start Tue Mar 31 2020 00:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48497 * 109.47067 * 269.99488 * 3 2 1 5 5 H 1.48496 * 109.47362 * 29.99977 * 3 2 1 6 6 H 1.48509 * 109.47208 * 149.99903 * 3 2 1 7 7 C 1.38811 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99493 * 0.02562 * 7 2 1 9 9 N 1.36927 * 120.00409 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00137 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99784 * 127.00830 * 11 10 9 13 13 C 1.50695 * 119.99993 * 7.55518 * 12 11 10 14 14 N 1.46503 * 109.47314 * 127.16120 * 13 12 11 15 15 C 1.34770 * 120.00159 * 180.27475 * 14 13 12 16 16 O 1.21279 * 120.00257 * 359.72428 * 15 14 13 17 17 C 1.50705 * 119.99671 * 179.72069 * 15 14 13 18 18 C 1.53003 * 109.46894 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47220 * 180.02562 * 18 17 15 20 20 C 1.34512 * 125.78867 * 89.71180 * 19 18 17 21 21 C 1.41381 * 106.84363 * 179.88996 * 20 19 18 22 22 C 1.34517 * 106.83466 * 0.37691 * 21 20 19 23 23 O 1.34297 * 125.79054 * 270.02332 * 19 18 17 24 24 H 0.97000 * 119.99724 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99797 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47066 * 60.00065 * 10 9 7 27 27 H 1.09003 * 109.47004 * 299.99725 * 10 9 7 28 28 H 1.08005 * 120.00273 * 307.00497 * 11 10 9 29 29 H 1.07997 * 119.99749 * 187.56130 * 12 11 10 30 30 H 1.09000 * 109.47307 * 7.15352 * 13 12 11 31 31 H 1.09001 * 109.47375 * 247.15813 * 13 12 11 32 32 H 0.97007 * 119.99258 * 359.97438 * 14 13 12 33 33 H 1.08993 * 109.47098 * 299.99844 * 17 15 14 34 34 H 1.08997 * 109.46840 * 60.00492 * 17 15 14 35 35 H 1.09000 * 109.47172 * 300.00050 * 18 17 15 36 36 H 1.09001 * 109.47010 * 59.99725 * 18 17 15 37 37 H 1.08004 * 126.57795 * 0.03020 * 20 19 18 38 38 H 1.07995 * 126.58751 * 180.16352 * 21 20 19 39 39 H 1.08001 * 125.78565 * 179.74824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0023 12 6 6.3618 -2.7477 0.9087 13 6 5.7978 -3.7877 1.8421 14 7 6.6352 -4.9890 1.7980 15 6 6.3181 -6.0595 2.5528 16 8 5.3424 -6.0267 3.2723 17 6 7.1761 -7.2975 2.5026 18 6 6.6000 -8.3557 3.4457 19 6 7.4582 -9.5935 3.3960 20 6 8.5218 -9.8453 4.1802 21 6 9.0228 -11.1106 3.7971 22 6 8.2404 -11.5526 2.7961 23 8 7.2945 -10.6296 2.5575 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3621 0.0014 26 1 3.8491 -3.0423 -0.8891 27 1 3.8484 -3.0427 0.8909 28 1 6.0224 -1.5431 -0.7440 29 1 7.3991 -2.4574 0.9869 30 1 4.7832 -4.0404 1.5341 31 1 5.7814 -3.3934 2.8582 32 1 7.4155 -5.0154 1.2222 33 1 7.1914 -7.6880 1.4851 34 1 8.1912 -7.0488 2.8118 35 1 6.5843 -7.9656 4.4633 36 1 5.5849 -8.6043 3.1362 37 1 8.9159 -9.2048 4.9554 38 1 9.8727 -11.6224 4.2236 39 1 8.3540 -12.4906 2.2728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320965789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:52 Heat of formation + Delta-G solvation = -16.231707 kcal Electronic energy + Delta-G solvation = -19884.358809 eV Core-core repulsion = 16600.610697 eV Total energy + Delta-G solvation = -3283.748112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.46150 -40.79549 -38.11075 -36.21188 -35.05414 -34.41277 -33.67883 -32.80129 -30.05775 -28.26155 -26.70721 -24.86950 -24.04700 -22.63693 -21.59086 -21.16655 -20.48427 -19.22246 -18.41527 -17.61166 -17.52996 -16.99622 -16.73984 -16.56966 -16.01004 -15.56757 -15.33425 -15.06787 -14.80193 -14.32083 -14.23588 -14.09566 -13.70096 -13.57285 -13.47333 -13.23185 -13.03928 -12.97043 -12.74057 -12.21091 -12.06719 -11.88416 -11.65290 -11.11367 -11.03545 -10.81553 -10.34406 -9.95500 -9.35714 -9.28014 -8.05566 -5.40714 0.80202 1.03646 1.36918 1.41972 1.49608 1.63404 1.73094 2.08124 2.45370 2.47091 3.25223 3.64594 3.75650 3.84880 3.89236 4.05374 4.10665 4.18824 4.19657 4.31575 4.35497 4.56639 4.62435 4.76636 4.84925 4.89129 4.96793 5.00096 5.06472 5.09956 5.27244 5.40296 5.55598 5.65315 5.69441 5.86221 6.18004 6.25153 6.57482 7.04264 7.27410 7.78389 8.00062 9.15869 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.002314 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.847212 B =12095.623091 C =12390.405810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.161 3.839 11 C -0.140 4.140 12 C -0.153 4.153 13 C 0.135 3.865 14 N -0.709 5.709 15 C 0.507 3.493 16 O -0.590 6.590 17 C -0.122 4.122 18 C -0.023 4.023 19 C -0.026 4.026 20 C -0.215 4.215 21 C -0.227 4.227 22 C -0.047 4.047 23 O -0.196 6.196 24 H 0.259 0.741 25 H 0.369 0.631 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.419 0.581 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.250 -19.532 4.940 33.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.036 3.964 11 C -0.160 4.160 12 C -0.172 4.172 13 C 0.011 3.989 14 N -0.362 5.362 15 C 0.295 3.705 16 O -0.470 6.470 17 C -0.162 4.162 18 C -0.061 4.061 19 C -0.076 4.076 20 C -0.234 4.234 21 C -0.245 4.245 22 C -0.113 4.113 23 O -0.093 6.093 24 H 0.068 0.932 25 H 0.203 0.797 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.257 0.743 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 26.130 -19.626 5.230 33.095 hybrid contribution 0.017 0.944 -0.110 0.951 sum 26.147 -18.681 5.120 32.540 Atomic orbital electron populations 1.69908 1.07293 1.26926 1.59250 1.25639 0.96286 1.01748 1.02195 0.85282 0.78606 0.78765 0.78351 1.19904 1.22128 1.17342 1.19031 0.82738 0.93513 1.42096 0.93075 1.42598 1.02320 1.03994 1.91012 1.20066 0.89793 0.87875 0.98643 1.23066 0.93722 1.00604 0.98567 1.22852 1.01561 0.97693 0.95066 1.20409 0.94410 0.84699 0.99341 1.45842 1.30995 1.13717 1.45636 1.21232 0.85217 0.85335 0.78744 1.90740 1.30505 1.83578 1.42194 1.21622 1.00525 0.90851 1.03153 1.19765 0.97052 0.87427 1.01848 1.22497 0.99976 0.90844 0.94292 1.21929 0.98292 0.99263 1.03963 1.22188 1.04197 0.97269 1.00886 1.24778 0.89805 0.95607 1.01156 1.84028 1.47960 1.26101 1.51204 0.93182 0.79736 0.95417 0.94881 0.84743 0.82669 0.92378 0.91828 0.74302 0.86847 0.85480 0.88236 0.90986 0.82175 0.81508 0.75052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.96 45.90 27.74 68.60 1.90 47.80 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 7 C -0.24 -14.45 10.47 84.03 0.88 -13.57 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.75 -36.26 5.40 -347.17 -1.87 -38.14 16 10 C 0.16 6.28 6.35 85.63 0.54 6.82 16 11 C -0.14 -3.79 9.63 25.64 0.25 -3.55 16 12 C -0.15 -3.23 9.63 25.64 0.25 -2.98 16 13 C 0.13 3.41 5.76 85.63 0.49 3.90 16 14 N -0.71 -13.24 5.55 -466.79 -2.59 -15.83 16 15 C 0.51 11.23 7.83 87.66 0.69 11.91 16 16 O -0.59 -19.43 15.98 -3.03 -0.05 -19.48 16 17 C -0.12 -1.67 5.68 29.85 0.17 -1.50 16 18 C -0.02 -0.40 5.04 29.85 0.15 -0.25 16 19 C -0.03 -0.46 6.57 24.83 0.16 -0.30 16 20 C -0.22 -3.24 10.81 22.19 0.24 -3.00 16 21 C -0.23 -2.92 10.91 22.19 0.24 -2.68 16 22 C -0.05 -0.59 12.09 66.97 0.81 0.22 16 23 O -0.20 -3.62 10.65 -2.40 -0.03 -3.65 16 24 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 25 H 0.37 16.53 5.52 -92.70 -0.51 16.02 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.03 1.37 5.29 -2.39 -0.01 1.36 16 28 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.06 1.88 5.30 -2.39 -0.01 1.87 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.42 4.49 8.46 -92.70 -0.78 3.70 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.23 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -80.82 336.28 2.72 -78.11 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.29 Total: 24.10 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.34 Total: -8.58 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.16 Total: -118.29 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.13 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -80.82 2.72 -78.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320965789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.874 kcal (2) G-P(sol) polarization free energy of solvation -80.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds