Wall clock time and date at job start Mon Mar 30 2020 23:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00059 * 2 1 4 4 C 1.50708 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99673 * 90.00289 * 4 3 2 6 6 C 1.38207 * 119.99568 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.00357 * 359.95719 * 6 5 4 8 8 C 1.38220 * 119.99681 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99654 * 180.02562 * 8 7 6 10 10 O 1.45203 * 109.46720 * 90.00633 * 9 8 7 11 11 C 1.34236 * 116.99597 * 179.97438 * 10 9 8 12 12 O 1.20826 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99758 * 179.97438 * 11 10 9 14 14 H 1.09000 * 109.47038 * 59.99732 * 13 11 10 15 15 C 1.52997 * 109.46962 * 299.99987 * 13 11 10 16 16 C 1.50700 * 109.46799 * 179.97438 * 13 11 10 17 17 H 1.07996 * 120.00003 * 0.02562 * 16 13 11 18 18 C 1.37884 * 119.99582 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99864 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 119.99608 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47303 * 60.00571 * 20 18 16 22 22 H 1.48503 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47454 * 300.00305 * 20 18 16 24 24 C 1.38204 * 119.99830 * 270.02165 * 4 3 2 25 25 H 1.09006 * 109.46697 * 299.99893 * 1 2 3 26 26 H 1.08996 * 109.46998 * 59.99254 * 1 2 3 27 27 H 1.08995 * 109.47489 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46884 * 60.00871 * 3 2 1 29 29 H 1.09003 * 109.47324 * 300.00278 * 3 2 1 30 30 H 1.07991 * 120.00010 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00334 * 179.97438 * 6 5 4 32 32 H 1.08000 * 120.00604 * 179.72567 * 7 6 5 33 33 H 1.08997 * 109.47118 * 210.00049 * 9 8 7 34 34 H 1.08996 * 109.47165 * 330.00477 * 9 8 7 35 35 H 1.09001 * 109.47617 * 60.00422 * 15 13 11 36 36 H 1.09004 * 109.46663 * 180.02562 * 15 13 11 37 37 H 1.09000 * 109.47036 * 299.99747 * 15 13 11 38 38 H 0.97004 * 119.99473 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.00444 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2012 1.1320 -1.1984 6 6 5.5789 1.0222 -1.1989 7 6 6.2686 0.9677 -0.0019 8 6 5.5803 1.0234 1.1954 9 6 6.3321 0.9646 2.5002 10 8 6.6821 2.3104 2.9182 11 6 7.3595 2.4337 4.0705 12 8 7.6499 1.4498 4.7089 13 6 7.7578 3.7994 4.5679 14 1 6.8645 4.4049 4.7213 15 6 8.6607 4.4753 3.5341 16 6 8.5011 3.6620 5.8716 17 1 8.6687 2.6837 6.2972 18 6 8.9681 4.7854 6.5205 19 7 8.7643 5.9767 6.0020 20 14 9.8900 4.6152 8.1361 21 1 11.1068 3.7898 7.9272 22 1 10.2824 5.9609 8.6264 23 1 9.0135 3.9595 9.1396 24 6 4.2019 1.1311 1.1960 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6888 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6625 1.1745 -2.1333 31 1 6.1169 0.9794 -2.1344 32 1 7.3448 0.8774 -0.0023 33 1 5.7045 0.4997 3.2605 34 1 7.2406 0.3767 2.3698 35 1 8.1227 4.5747 2.5914 36 1 8.9491 5.4629 3.8941 37 1 9.5539 3.8698 3.3807 38 1 9.0926 6.7671 6.4587 39 1 3.6640 1.1736 2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327177665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:21 Heat of formation + Delta-G solvation = -116.569295 kcal Electronic energy + Delta-G solvation = -20720.564054 eV Core-core repulsion = 17400.172227 eV Total energy + Delta-G solvation = -3320.391828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92522 -39.24759 -37.78354 -35.73974 -33.87180 -32.55003 -31.65406 -30.52770 -27.58209 -26.48193 -25.52640 -25.19155 -23.01488 -22.14393 -20.74909 -19.76531 -16.94586 -16.68694 -16.54699 -16.36201 -16.05586 -15.77563 -15.62213 -15.30731 -14.66695 -14.42692 -14.03924 -13.14851 -12.97306 -12.86811 -12.80219 -12.56328 -12.38092 -11.98908 -11.72037 -11.51842 -11.10623 -11.05046 -11.02423 -10.78339 -10.68478 -10.33355 -10.05496 -10.03295 -9.97744 -9.25762 -9.04546 -8.93328 -8.76301 -8.43315 -6.09726 -4.15265 1.12397 1.27457 3.25752 3.31510 3.34019 3.35845 3.41168 3.68289 4.07968 4.42651 4.61959 4.64620 4.82734 4.98631 4.99586 5.05469 5.10913 5.16262 5.23371 5.31934 5.36553 5.40198 5.57466 5.60904 5.88777 5.97165 6.17460 6.34410 6.42754 6.54568 6.67842 6.82873 6.88507 6.89116 6.89829 7.23391 7.44975 7.75179 7.95412 8.15181 8.85761 8.94484 9.50149 10.97634 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.003169 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.038303 B = 8834.422673 C = 9161.846925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.103 3.897 4 C -0.099 4.099 5 C -0.094 4.094 6 C -0.126 4.126 7 C -0.088 4.088 8 C -0.087 4.087 9 C 0.102 3.898 10 O -0.360 6.360 11 C 0.464 3.536 12 O -0.518 6.518 13 C 0.058 3.942 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.074 4.074 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 -7.896 -15.151 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.099 4.099 5 C -0.112 4.112 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.087 4.087 9 C 0.028 3.972 10 O -0.279 6.279 11 C 0.309 3.691 12 O -0.405 6.405 13 C 0.039 3.961 14 H 0.082 0.918 15 C -0.191 4.191 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.093 4.093 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.404 -8.189 -14.927 21.065 hybrid contribution 0.262 0.033 0.847 0.888 sum -12.142 -8.156 -14.079 20.302 Atomic orbital electron populations 1.22760 0.81028 1.02820 1.00040 1.87977 1.19569 1.27557 1.95418 1.21348 0.89837 0.85005 1.01071 1.19502 0.93907 1.02988 0.93487 1.21030 0.94354 0.98571 0.97276 1.21102 0.94152 1.01130 0.98016 1.21166 1.00185 0.97517 0.91779 1.19620 0.93489 1.01412 0.94168 1.21616 0.98868 0.83957 0.92805 1.86702 1.69045 1.30600 1.41539 1.25392 0.72511 0.94810 0.76383 1.90497 1.52275 1.41100 1.56599 1.18755 0.97777 0.84163 0.95362 0.91846 1.21732 0.97990 1.03882 0.95514 1.21105 1.35683 0.94294 1.04052 0.90686 1.24938 0.95956 0.94974 0.98115 1.69876 1.46362 0.97715 1.39154 0.86429 0.80179 0.77021 0.83067 1.20081 1.21219 1.20083 1.20973 0.93509 0.97002 0.97777 0.93913 0.94084 0.89581 0.92165 0.92360 0.86002 0.85636 0.85572 0.90922 0.90868 0.95749 0.88569 0.95007 0.92642 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.23 10.69 -35.23 -0.38 -4.61 16 3 C 0.10 1.03 6.06 36.01 0.22 1.25 16 4 C -0.10 -1.18 5.51 -104.62 -0.58 -1.75 16 5 C -0.09 -1.02 9.70 -39.58 -0.38 -1.41 16 6 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 16 7 C -0.09 -1.13 9.70 -39.58 -0.38 -1.51 16 8 C -0.09 -1.25 5.52 -104.62 -0.58 -1.83 16 9 C 0.10 1.70 5.59 36.01 0.20 1.90 16 10 O -0.36 -7.38 10.11 -39.27 -0.40 -7.78 16 11 C 0.46 11.09 7.25 36.01 0.26 11.35 16 12 O -0.52 -13.34 15.21 -18.75 -0.29 -13.62 16 13 C 0.06 1.50 2.74 -92.92 -0.25 1.25 16 14 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 15 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16 16 C -0.51 -14.53 8.38 -34.44 -0.29 -14.82 16 17 H 0.08 2.21 6.76 -52.49 -0.35 1.85 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 20 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.07 -1.00 9.36 -39.59 -0.37 -1.37 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -31.35 337.76 -7.28 -38.63 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.71 Total: -1.27 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.20 Total: -8.65 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.06 Total: -26.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.35 -7.28 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327177665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.941 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds