Wall clock time and date at job start Mon Mar 30 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00059 * 2 1 4 4 C 1.50708 * 109.46765 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99673 * 90.00289 * 4 3 2 6 6 C 1.38207 * 119.99568 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.00357 * 359.95719 * 6 5 4 8 8 C 1.38220 * 119.99681 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99654 * 180.02562 * 8 7 6 10 10 O 1.45203 * 109.46720 * 90.00633 * 9 8 7 11 11 C 1.34236 * 116.99597 * 179.97438 * 10 9 8 12 12 O 1.20826 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99758 * 179.97438 * 11 10 9 14 14 H 1.09000 * 109.47038 * 59.99732 * 13 11 10 15 15 C 1.52997 * 109.46962 * 299.99987 * 13 11 10 16 16 C 1.50700 * 109.46799 * 179.97438 * 13 11 10 17 17 H 1.07996 * 120.00003 * 0.02562 * 16 13 11 18 18 C 1.37884 * 119.99582 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99864 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 119.99608 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47303 * 60.00571 * 20 18 16 22 22 H 1.48503 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47454 * 300.00305 * 20 18 16 24 24 C 1.38204 * 119.99830 * 270.02165 * 4 3 2 25 25 H 1.09006 * 109.46697 * 299.99893 * 1 2 3 26 26 H 1.08996 * 109.46998 * 59.99254 * 1 2 3 27 27 H 1.08995 * 109.47489 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46884 * 60.00871 * 3 2 1 29 29 H 1.09003 * 109.47324 * 300.00278 * 3 2 1 30 30 H 1.07991 * 120.00010 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00334 * 179.97438 * 6 5 4 32 32 H 1.08000 * 120.00604 * 179.72567 * 7 6 5 33 33 H 1.08997 * 109.47118 * 210.00049 * 9 8 7 34 34 H 1.08996 * 109.47165 * 330.00477 * 9 8 7 35 35 H 1.09001 * 109.47617 * 60.00422 * 15 13 11 36 36 H 1.09004 * 109.46663 * 180.02562 * 15 13 11 37 37 H 1.09000 * 109.47036 * 299.99747 * 15 13 11 38 38 H 0.97004 * 119.99473 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.00444 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2012 1.1320 -1.1984 6 6 5.5789 1.0222 -1.1989 7 6 6.2686 0.9677 -0.0019 8 6 5.5803 1.0234 1.1954 9 6 6.3321 0.9646 2.5002 10 8 6.6821 2.3104 2.9182 11 6 7.3595 2.4337 4.0705 12 8 7.6499 1.4498 4.7089 13 6 7.7578 3.7994 4.5679 14 1 6.8645 4.4049 4.7213 15 6 8.6607 4.4753 3.5341 16 6 8.5011 3.6620 5.8716 17 1 8.6687 2.6837 6.2972 18 6 8.9681 4.7854 6.5205 19 7 8.7643 5.9767 6.0020 20 14 9.8900 4.6152 8.1361 21 1 11.1068 3.7898 7.9272 22 1 10.2824 5.9609 8.6264 23 1 9.0135 3.9595 9.1396 24 6 4.2019 1.1311 1.1960 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6888 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6625 1.1745 -2.1333 31 1 6.1169 0.9794 -2.1344 32 1 7.3448 0.8774 -0.0023 33 1 5.7045 0.4997 3.2605 34 1 7.2406 0.3767 2.3698 35 1 8.1227 4.5747 2.5914 36 1 8.9491 5.4629 3.8941 37 1 9.5539 3.8698 3.3807 38 1 9.0926 6.7671 6.4587 39 1 3.6640 1.1736 2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327177665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:20 Heat of formation + Delta-G solvation = -133.541685 kcal Electronic energy + Delta-G solvation = -20721.300032 eV Core-core repulsion = 17400.172227 eV Total energy + Delta-G solvation = -3321.127806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45502 -40.44435 -38.58241 -37.44636 -35.93315 -33.61930 -32.74108 -32.39382 -28.33361 -27.70833 -27.27376 -26.24732 -24.85626 -23.10186 -21.81608 -21.58348 -18.65690 -18.07043 -17.89965 -17.51917 -17.33306 -17.15815 -16.79246 -16.51129 -16.05621 -15.73930 -15.12682 -14.77540 -14.49936 -14.19349 -13.88012 -13.64174 -13.52657 -13.26745 -13.13730 -12.97360 -12.79007 -12.61785 -12.37933 -12.31136 -12.06817 -12.04597 -11.97557 -11.61849 -11.13241 -11.09770 -10.66158 -10.54584 -9.86785 -9.81534 -8.20640 -6.34326 0.14789 0.33230 1.40865 1.42596 1.44943 1.52529 1.94678 2.42870 2.66571 3.09281 3.18066 3.58957 3.73591 3.92621 4.07617 4.12559 4.18564 4.28276 4.41554 4.44140 4.46923 4.56008 4.58884 4.67637 4.69988 4.87085 4.89146 4.95877 4.98711 5.04431 5.35448 5.42247 5.46908 5.53666 5.55141 5.68029 5.87466 5.96885 6.09161 6.19306 6.71880 7.02146 7.34492 8.85721 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.003169 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.038303 B = 8834.422673 C = 9161.846925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.103 3.897 4 C -0.107 4.107 5 C -0.090 4.090 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.109 4.109 9 C 0.100 3.900 10 O -0.358 6.358 11 C 0.472 3.528 12 O -0.543 6.543 13 C 0.051 3.949 14 H 0.050 0.950 15 C -0.120 4.120 16 C -0.541 4.541 17 H 0.056 0.944 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.090 4.090 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -7.944 -16.758 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.027 3.973 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.109 4.109 9 C 0.027 3.973 10 O -0.275 6.275 11 C 0.318 3.682 12 O -0.432 6.432 13 C 0.032 3.968 14 H 0.068 0.932 15 C -0.178 4.178 16 C -0.579 4.579 17 H 0.075 0.925 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.199 1.199 24 C -0.109 4.109 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.013 -8.231 -16.560 22.612 hybrid contribution 0.332 0.012 1.227 1.271 sum -12.682 -8.219 -15.333 21.529 Atomic orbital electron populations 1.22949 0.79299 1.03839 1.01088 1.87928 1.21535 1.28104 1.95642 1.21402 0.88587 0.85010 1.02277 1.19809 0.95224 1.02367 0.93294 1.21440 0.94555 0.96791 0.98021 1.21464 0.94441 0.99633 0.98447 1.21371 1.00808 0.97604 0.91926 1.19517 0.93863 1.04085 0.93453 1.21862 0.99387 0.81826 0.94211 1.86646 1.67962 1.33232 1.39685 1.24900 0.72479 0.93778 0.77056 1.90474 1.53469 1.41650 1.57626 1.18680 0.97341 0.85393 0.95394 0.93234 1.21558 0.97807 1.02476 0.95946 1.21235 1.37143 0.93847 1.05674 0.92530 1.25651 0.96412 0.94569 1.01090 1.69957 1.46431 0.98158 1.40199 0.85513 0.78874 0.77521 0.79170 1.19832 1.19796 1.19931 1.21079 0.93338 0.97794 0.98644 0.93397 0.92476 0.88679 0.91991 0.90130 0.83092 0.82574 0.84823 0.91064 0.90488 0.93407 0.90295 0.95133 0.92194 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.38 10.69 -148.98 -1.59 -9.97 16 3 C 0.10 1.86 6.06 71.24 0.43 2.29 16 4 C -0.11 -2.38 5.51 -19.86 -0.11 -2.49 16 5 C -0.09 -1.70 9.70 22.27 0.22 -1.48 16 6 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 7 C -0.10 -2.39 9.70 22.27 0.22 -2.18 16 8 C -0.11 -3.12 5.52 -19.86 -0.11 -3.23 16 9 C 0.10 3.40 5.59 71.24 0.40 3.80 16 10 O -0.36 -14.80 10.11 -51.48 -0.52 -15.32 16 11 C 0.47 23.00 7.25 71.24 0.52 23.52 16 12 O -0.54 -28.65 15.21 21.96 0.33 -28.32 16 13 C 0.05 2.68 2.74 -12.29 -0.03 2.64 16 14 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 15 C -0.12 -5.77 8.90 71.98 0.64 -5.13 16 16 C -0.54 -31.24 8.38 25.60 0.21 -31.02 16 17 H 0.06 3.42 6.76 -2.91 -0.02 3.40 16 18 C 0.02 1.27 5.30 84.66 0.45 1.71 16 19 N -0.91 -50.92 11.32 21.45 0.24 -50.67 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.09 -2.40 9.36 22.27 0.21 -2.19 16 25 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 29 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.08 2.51 8.08 -2.39 -0.02 2.50 16 35 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 36 H 0.08 4.08 6.07 -2.38 -0.01 4.06 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -67.07 337.76 6.03 -61.04 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.03 Total: 11.36 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.51 Total: -14.32 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.24 Total: -50.67 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -1.78 Total: -53.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.07 6.03 -61.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327177665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.498 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds