Wall clock time and date at job start Tue Mar 31 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47224 * 240.00180 * 3 2 1 5 5 H 1.48503 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47277 * 120.00358 * 3 2 1 7 7 C 1.40026 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.41316 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78749 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.14967 * 180.02562 * 10 9 7 12 12 C 1.38642 * 118.68183 * 359.74750 * 11 10 9 13 13 C 1.39754 * 119.48698 * 0.50465 * 12 11 10 14 14 N 1.38831 * 119.58020 * 179.76656 * 13 12 11 15 15 C 1.46503 * 120.00294 * 359.72139 * 14 13 12 16 16 C 1.52998 * 109.47304 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47368 * 180.02562 * 16 15 14 18 18 O 1.42898 * 110.45784 * 62.39294 * 17 16 15 19 19 C 1.54503 * 110.51309 * 184.99951 * 17 16 15 20 20 C 1.54487 * 104.06411 * 118.77908 * 19 17 16 21 21 O 1.44421 * 104.79872 * 23.97884 * 20 19 17 22 22 C 1.44430 * 105.27998 * 319.48571 * 21 20 19 23 23 N 1.31976 * 120.83697 * 359.48431 * 13 12 11 24 24 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.42056 * 0.02562 * 10 9 7 26 26 H 1.07994 * 120.65876 * 180.02562 * 11 10 9 27 27 H 1.08003 * 120.25850 * 180.26457 * 12 11 10 28 28 H 0.97004 * 119.99926 * 179.72276 * 14 13 12 29 29 H 1.08995 * 109.46653 * 59.99921 * 15 14 13 30 30 H 1.08992 * 109.46835 * 300.00115 * 15 14 13 31 31 H 1.08996 * 109.47076 * 59.99586 * 16 15 14 32 32 H 1.09003 * 109.47161 * 300.00544 * 16 15 14 33 33 H 0.96699 * 114.00057 * 181.91132 * 18 17 16 34 34 H 1.09002 * 110.51350 * 0.13845 * 19 17 16 35 35 H 1.08992 * 110.51342 * 237.42401 * 19 17 16 36 36 H 1.08997 * 110.37332 * 142.81185 * 20 19 17 37 37 H 1.09004 * 110.37288 * 265.14843 * 20 19 17 38 38 H 1.08999 * 110.37021 * 281.68369 * 22 21 20 39 39 H 1.08997 * 110.46528 * 159.38982 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0016 11 6 1.3035 -4.8417 -0.0022 12 6 -0.0821 -4.7944 0.0038 13 6 -0.7281 -3.5552 -0.0006 14 7 -2.1155 -3.5056 0.0004 15 6 -2.8929 -4.7474 -0.0001 16 6 -4.3862 -4.4142 0.0005 17 6 -5.1981 -5.7110 0.0006 18 8 -4.9368 -6.4638 1.1868 19 6 -6.7073 -5.4049 -0.1248 20 6 -7.1226 -6.0974 -1.4418 21 8 -6.1431 -7.1410 -1.6347 22 6 -4.8800 -6.5522 -1.2554 23 7 -0.0360 -2.4315 -0.0001 24 1 -0.4850 0.8401 0.0004 25 1 3.0886 -3.6553 -0.0021 26 1 1.8222 -5.7889 -0.0026 27 1 -0.6578 -5.7082 0.0078 28 1 -2.5702 -2.6487 0.0014 29 1 -2.6496 -5.3287 0.8891 30 1 -2.6508 -5.3271 -0.8907 31 1 -4.6292 -3.8330 -0.8890 32 1 -4.6287 -3.8340 0.8909 33 1 -5.4030 -7.3100 1.2263 34 1 -6.8749 -4.3298 -0.1893 35 1 -7.2541 -5.8277 0.7179 36 1 -8.1202 -6.5261 -1.3469 37 1 -7.0904 -5.3889 -2.2696 38 1 -4.5038 -5.9136 -2.0546 39 1 -4.1534 -7.3292 -1.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327281401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:03 Heat of formation + Delta-G solvation = -59.572732 kcal Electronic energy + Delta-G solvation = -21278.733294 eV Core-core repulsion = 17993.105774 eV Total energy + Delta-G solvation = -3285.627520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.29250 -38.21254 -36.51152 -35.23347 -33.38393 -32.17646 -30.67992 -30.14614 -28.75374 -26.87897 -25.29234 -23.90010 -22.41616 -21.44927 -20.44666 -20.23685 -17.62765 -17.30302 -16.65424 -16.15854 -15.76091 -14.91475 -14.85366 -14.67358 -14.54552 -14.30180 -13.98269 -13.48311 -13.23428 -12.88340 -12.72824 -12.35543 -11.98888 -11.80559 -11.57595 -11.48047 -11.30731 -11.11304 -10.97913 -10.83803 -10.61076 -10.46358 -10.38815 -9.89583 -9.77473 -9.43493 -8.83726 -7.86862 -7.47295 -6.47095 -6.29399 -4.43961 2.92206 3.11872 3.14874 3.27873 3.33902 3.61730 3.96122 4.00724 4.08144 4.27339 4.45852 4.73007 4.76692 4.87759 4.96465 5.24282 5.30138 5.37207 5.39603 5.50383 5.60127 5.69103 5.80092 6.05641 6.18134 6.20577 6.31647 6.45035 6.63113 6.90131 6.93355 6.98652 7.28523 7.43152 7.63903 7.85585 7.96106 8.19923 8.40436 8.72259 8.84016 9.16051 10.28369 10.44056 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.003602 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.461618 B = 7771.315446 C = 8444.401925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.436 4.436 8 H 0.082 0.918 9 C 0.293 3.707 10 C -0.317 4.317 11 C -0.032 4.032 12 C -0.366 4.366 13 C 0.411 3.589 14 N -0.741 5.741 15 C 0.144 3.856 16 C -0.112 4.112 17 C 0.111 3.889 18 O -0.546 6.546 19 C -0.184 4.184 20 C 0.042 3.958 21 O -0.377 6.377 22 C 0.014 3.986 23 N -0.532 5.532 24 H 0.269 0.731 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.394 0.606 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.378 0.622 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 -7.831 -1.255 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.100 0.900 9 C 0.166 3.834 10 C -0.340 4.340 11 C -0.057 4.057 12 C -0.392 4.392 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.019 3.981 16 C -0.150 4.150 17 C 0.069 3.931 18 O -0.352 6.352 19 C -0.222 4.222 20 C -0.035 4.035 21 O -0.295 6.295 22 C -0.063 4.063 23 N -0.254 5.254 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.229 0.771 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.925 -6.801 -1.200 15.544 hybrid contribution 0.275 -0.069 -0.076 0.294 sum -13.650 -6.870 -1.276 15.335 Atomic orbital electron populations 1.70150 1.07136 1.27337 1.29299 1.26041 0.94849 1.00860 0.93555 0.86440 0.80097 0.80689 0.79813 1.19030 1.20385 1.19030 1.19542 0.94111 0.89417 1.43732 0.89966 1.18195 0.86918 0.91827 0.86504 1.21532 0.98396 0.93489 1.20567 1.20594 0.93444 0.96366 0.95253 1.20616 0.94606 0.95525 1.28456 1.18513 0.84269 0.90284 0.89822 1.44123 1.02823 1.06696 1.84107 1.20986 0.88394 0.87776 1.00984 1.21742 0.94987 0.94593 1.03646 1.22459 0.93157 0.92050 0.85451 1.86609 1.72752 1.35563 1.40229 1.23701 0.96467 1.02877 0.99187 1.23446 0.93532 0.90381 0.96138 1.89151 1.17084 1.35163 1.88143 1.24329 0.87274 0.98340 0.96385 1.68214 1.07680 1.24332 1.25133 0.91962 0.88733 0.88959 0.89202 0.77149 0.92123 0.93372 0.89883 0.90114 0.77421 0.89325 0.89656 0.88945 0.91919 0.90720 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.27 11.46 55.55 0.64 -18.64 16 2 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 3 Si 0.91 18.92 29.56 -169.99 -5.02 13.90 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.44 -12.01 9.14 -37.74 -0.34 -12.35 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.32 6.55 -85.00 -0.56 7.76 16 10 C -0.32 -8.21 9.83 -38.66 -0.38 -8.59 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.37 -8.72 9.34 -38.87 -0.36 -9.08 16 13 C 0.41 10.30 7.65 -155.31 -1.19 9.11 16 14 N -0.74 -15.09 5.72 -60.40 -0.35 -15.44 16 15 C 0.14 2.30 4.54 -4.04 -0.02 2.28 16 16 C -0.11 -1.36 4.33 -26.73 -0.12 -1.48 16 17 C 0.11 1.15 1.11 -89.05 -0.10 1.05 16 18 O -0.55 -6.06 12.51 -35.23 -0.44 -6.50 16 19 C -0.18 -1.52 6.52 -25.16 -0.16 -1.68 16 20 C 0.04 0.34 7.63 37.94 0.29 0.63 16 21 O -0.38 -4.11 11.65 -35.23 -0.41 -4.52 16 22 C 0.01 0.14 5.82 37.94 0.22 0.36 16 23 N -0.53 -14.99 7.89 -10.33 -0.08 -15.07 16 24 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 25 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.09 1.92 6.68 -52.48 -0.35 1.57 16 28 H 0.39 7.90 8.59 -40.82 -0.35 7.55 16 29 H 0.06 1.05 7.56 -51.93 -0.39 0.66 16 30 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.38 2.86 9.04 45.56 0.41 3.28 16 34 H 0.09 0.67 7.73 -51.93 -0.40 0.27 16 35 H 0.08 0.64 8.00 -51.93 -0.42 0.23 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 39 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -31.85 323.32 -8.77 -40.62 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.76 Total: 12.16 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.21 Total: -11.38 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.21 Total: -49.15 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.85 Total: -11.01 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.85 -8.77 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327281401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.957 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds