Wall clock time and date at job start Tue Mar 31 2020 00:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47224 * 240.00180 * 3 2 1 5 5 H 1.48503 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47277 * 120.00358 * 3 2 1 7 7 C 1.40026 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.41316 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78749 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.14967 * 180.02562 * 10 9 7 12 12 C 1.38642 * 118.68183 * 359.74750 * 11 10 9 13 13 C 1.39754 * 119.48698 * 0.50465 * 12 11 10 14 14 N 1.38831 * 119.58020 * 179.76656 * 13 12 11 15 15 C 1.46503 * 120.00294 * 359.72139 * 14 13 12 16 16 C 1.52998 * 109.47304 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47368 * 180.02562 * 16 15 14 18 18 O 1.42898 * 110.45784 * 62.39294 * 17 16 15 19 19 C 1.54503 * 110.51309 * 184.99951 * 17 16 15 20 20 C 1.54487 * 104.06411 * 118.77908 * 19 17 16 21 21 O 1.44421 * 104.79872 * 23.97884 * 20 19 17 22 22 C 1.44430 * 105.27998 * 319.48571 * 21 20 19 23 23 N 1.31976 * 120.83697 * 359.48431 * 13 12 11 24 24 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.42056 * 0.02562 * 10 9 7 26 26 H 1.07994 * 120.65876 * 180.02562 * 11 10 9 27 27 H 1.08003 * 120.25850 * 180.26457 * 12 11 10 28 28 H 0.97004 * 119.99926 * 179.72276 * 14 13 12 29 29 H 1.08995 * 109.46653 * 59.99921 * 15 14 13 30 30 H 1.08992 * 109.46835 * 300.00115 * 15 14 13 31 31 H 1.08996 * 109.47076 * 59.99586 * 16 15 14 32 32 H 1.09003 * 109.47161 * 300.00544 * 16 15 14 33 33 H 0.96699 * 114.00057 * 181.91132 * 18 17 16 34 34 H 1.09002 * 110.51350 * 0.13845 * 19 17 16 35 35 H 1.08992 * 110.51342 * 237.42401 * 19 17 16 36 36 H 1.08997 * 110.37332 * 142.81185 * 20 19 17 37 37 H 1.09004 * 110.37288 * 265.14843 * 20 19 17 38 38 H 1.08999 * 110.37021 * 281.68369 * 22 21 20 39 39 H 1.08997 * 110.46528 * 159.38982 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0016 11 6 1.3035 -4.8417 -0.0022 12 6 -0.0821 -4.7944 0.0038 13 6 -0.7281 -3.5552 -0.0006 14 7 -2.1155 -3.5056 0.0004 15 6 -2.8929 -4.7474 -0.0001 16 6 -4.3862 -4.4142 0.0005 17 6 -5.1981 -5.7110 0.0006 18 8 -4.9368 -6.4638 1.1868 19 6 -6.7073 -5.4049 -0.1248 20 6 -7.1226 -6.0974 -1.4418 21 8 -6.1431 -7.1410 -1.6347 22 6 -4.8800 -6.5522 -1.2554 23 7 -0.0360 -2.4315 -0.0001 24 1 -0.4850 0.8401 0.0004 25 1 3.0886 -3.6553 -0.0021 26 1 1.8222 -5.7889 -0.0026 27 1 -0.6578 -5.7082 0.0078 28 1 -2.5702 -2.6487 0.0014 29 1 -2.6496 -5.3287 0.8891 30 1 -2.6508 -5.3271 -0.8907 31 1 -4.6292 -3.8330 -0.8890 32 1 -4.6287 -3.8340 0.8909 33 1 -5.4030 -7.3100 1.2263 34 1 -6.8749 -4.3298 -0.1893 35 1 -7.2541 -5.8277 0.7179 36 1 -8.1202 -6.5261 -1.3469 37 1 -7.0904 -5.3889 -2.2696 38 1 -4.5038 -5.9136 -2.0546 39 1 -4.1534 -7.3292 -1.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327281401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:02 Heat of formation + Delta-G solvation = -82.712542 kcal Electronic energy + Delta-G solvation = -21279.736711 eV Core-core repulsion = 17993.105774 eV Total energy + Delta-G solvation = -3286.630938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10280 -40.07880 -37.51743 -36.64091 -35.21492 -33.36455 -32.26942 -31.51629 -30.21917 -28.06754 -27.20724 -24.96304 -23.53172 -23.15319 -22.01968 -21.37376 -19.25593 -18.40646 -18.10414 -17.14820 -16.82627 -16.57771 -16.37553 -15.97159 -15.67781 -15.54863 -15.31540 -14.80595 -14.66942 -14.19769 -14.16553 -13.77324 -13.54869 -12.94169 -12.77033 -12.70095 -12.62169 -12.53657 -12.41536 -12.18435 -12.11883 -11.82256 -11.69304 -11.25724 -11.24116 -10.65524 -10.55402 -9.83411 -9.45081 -8.30220 -8.22410 -6.47791 1.07034 1.34145 1.42233 1.54215 1.60309 2.26040 2.58106 2.93141 2.94051 3.20137 3.45317 3.67185 3.88885 4.01772 4.05697 4.13566 4.27952 4.31937 4.38374 4.51346 4.64961 4.73011 4.77134 4.79807 4.90492 4.98315 5.00376 5.00833 5.07526 5.11709 5.15045 5.38095 5.71151 5.73024 5.96534 6.06758 6.22921 6.55382 6.76969 6.84070 6.95275 7.22315 8.34258 8.51810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.003602 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.461618 B = 7771.315446 C = 8444.401925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.344 4.344 11 C -0.030 4.030 12 C -0.369 4.369 13 C 0.393 3.607 14 N -0.735 5.735 15 C 0.146 3.854 16 C -0.104 4.104 17 C 0.113 3.887 18 O -0.563 6.563 19 C -0.177 4.177 20 C 0.038 3.962 21 O -0.393 6.393 22 C 0.015 3.985 23 N -0.565 5.565 24 H 0.276 0.724 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.394 0.606 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 -7.928 -1.400 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.367 4.367 11 C -0.054 4.054 12 C -0.395 4.395 13 C 0.152 3.848 14 N -0.370 5.370 15 C 0.022 3.978 16 C -0.142 4.142 17 C 0.071 3.929 18 O -0.372 6.372 19 C -0.215 4.215 20 C -0.038 4.038 21 O -0.312 6.312 22 C -0.062 4.062 23 N -0.287 5.287 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.147 0.853 27 H 0.132 0.868 28 H 0.228 0.772 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.983 -6.947 -1.345 16.569 hybrid contribution 0.502 -0.174 -0.024 0.532 sum -14.481 -7.121 -1.370 16.195 Atomic orbital electron populations 1.70243 1.08780 1.28767 1.29606 1.26963 0.95761 1.04346 0.92493 0.85205 0.78613 0.75510 0.79950 1.18395 1.19209 1.18485 1.19925 0.94642 0.90516 1.45350 0.89518 1.18692 0.87694 0.93208 0.87290 1.21701 0.99026 0.93757 1.22177 1.21003 0.93663 0.97230 0.93527 1.20944 0.95043 0.96055 1.27458 1.18984 0.86039 0.90305 0.89473 1.44309 1.01483 1.08291 1.82934 1.21134 0.90272 0.85916 1.00499 1.21691 0.92410 0.95916 1.04139 1.22383 0.94264 0.90999 0.85227 1.86566 1.73471 1.36652 1.40484 1.23656 0.94615 1.03572 0.99637 1.23635 0.93786 0.90128 0.96240 1.89138 1.17521 1.36280 1.88264 1.24280 0.87413 0.98230 0.96318 1.68199 1.07995 1.25971 1.26578 0.91298 0.87871 0.85333 0.86752 0.77209 0.93328 0.92845 0.88568 0.90460 0.75730 0.88447 0.88676 0.87089 0.91293 0.91000 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.13 11.46 21.84 0.25 -40.88 16 2 C 0.03 1.37 5.50 85.29 0.47 1.84 16 3 Si 0.99 38.97 29.56 68.60 2.03 41.00 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.47 -26.71 9.14 23.46 0.21 -26.50 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.26 15.10 6.55 40.19 0.26 15.37 16 10 C -0.34 -18.06 9.83 22.87 0.22 -17.84 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.37 -17.36 9.34 22.73 0.21 -17.15 16 13 C 0.39 19.87 7.65 133.40 1.02 20.89 16 14 N -0.73 -29.96 5.72 -345.01 -1.97 -31.93 16 15 C 0.15 4.54 4.54 86.38 0.39 4.93 16 16 C -0.10 -2.39 4.33 30.59 0.13 -2.25 16 17 C 0.11 2.15 1.11 -9.78 -0.01 2.14 16 18 O -0.56 -11.63 12.51 -148.98 -1.86 -13.49 16 19 C -0.18 -2.48 6.52 31.61 0.21 -2.27 16 20 C 0.04 0.53 7.63 72.49 0.55 1.09 16 21 O -0.39 -7.85 11.65 -148.98 -1.74 -9.59 16 22 C 0.01 0.28 5.82 72.49 0.42 0.71 16 23 N -0.56 -32.63 7.89 -186.59 -1.47 -34.10 16 24 H 0.28 13.64 8.29 -92.71 -0.77 12.87 16 25 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 26 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 27 H 0.11 4.71 6.68 -2.91 -0.02 4.69 16 28 H 0.39 15.93 8.59 -92.71 -0.80 15.13 16 29 H 0.05 1.65 7.56 -2.39 -0.02 1.63 16 30 H 0.05 1.62 6.93 -2.39 -0.02 1.60 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.39 5.29 9.04 -74.06 -0.67 4.62 16 34 H 0.10 1.21 7.73 -2.39 -0.02 1.19 16 35 H 0.09 1.17 8.00 -2.39 -0.02 1.15 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 39 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 Total: -1.00 -69.59 323.32 -0.83 -70.42 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -0.39 Total: 38.81 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.33 Total: -20.23 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.20 Total: -106.92 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -3.60 Total: -23.08 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -69.59 -0.83 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327281401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.293 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds