Wall clock time and date at job start Mon Mar 30 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99770 * 3 2 1 7 7 C 1.37876 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00330 * 175.14295 * 7 2 1 9 9 C 1.50703 * 120.00032 * 355.42383 * 7 2 1 10 10 C 1.53005 * 115.54676 * 274.92215 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81585 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21351 * 120.00387 * 5.03078 * 12 11 10 14 14 C 1.49453 * 120.00243 * 185.03773 * 12 11 10 15 15 O 1.21358 * 119.99726 * 5.08572 * 14 12 11 16 16 N 1.34769 * 120.00473 * 185.08548 * 14 12 11 17 17 C 1.46501 * 120.00011 * 179.97438 * 16 14 12 18 18 C 1.54633 * 111.03942 * 267.02361 * 17 16 14 19 19 C 1.51103 * 104.72655 * 217.33345 * 18 17 16 20 20 C 1.30528 * 111.10233 * 16.44365 * 19 18 17 21 21 C 1.51100 * 111.10678 * 359.97438 * 20 19 18 22 22 C 1.52992 * 117.50333 * 129.24725 * 9 7 2 23 23 C 1.52998 * 117.49920 * 60.58499 * 9 7 2 24 24 H 0.97005 * 120.00163 * 4.99931 * 1 2 3 25 25 H 1.09004 * 109.47254 * 54.81876 * 10 9 7 26 26 H 1.09002 * 109.46969 * 174.81524 * 10 9 7 27 27 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 28 28 H 0.97004 * 119.99839 * 0.02562 * 16 14 12 29 29 H 1.08994 * 110.91722 * 31.04137 * 17 16 14 30 30 H 1.08996 * 110.39088 * 336.15121 * 18 17 16 31 31 H 1.08999 * 110.38395 * 98.52885 * 18 17 16 32 32 H 1.08000 * 124.45078 * 196.45240 * 19 18 17 33 33 H 1.07996 * 124.44449 * 180.02562 * 20 19 18 34 34 H 1.09002 * 110.38727 * 224.76013 * 21 20 19 35 35 H 1.08995 * 110.48133 * 102.42483 * 21 20 19 36 36 H 1.09001 * 117.49686 * 0.02562 * 22 9 7 37 37 H 1.09004 * 117.49963 * 145.01627 * 22 9 7 38 38 H 1.09001 * 117.50544 * 214.98024 * 23 9 7 39 39 H 1.09001 * 117.50141 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0787 9 6 1.2546 -2.4971 0.1052 10 6 0.9189 -2.9528 1.5267 11 7 2.1581 -3.2464 2.2509 12 6 2.1056 -3.7587 3.4963 13 8 1.0362 -4.0622 3.9830 14 6 3.3644 -3.9531 4.2781 15 8 4.4232 -3.5651 3.8296 16 7 3.3237 -4.5592 5.4811 17 6 4.5578 -4.7502 6.2472 18 6 5.1841 -6.1335 5.9550 19 6 5.7398 -6.5919 7.2833 20 6 5.2357 -5.8989 8.2679 21 6 4.2603 -4.8625 7.7604 22 6 1.5728 -3.5803 -0.9273 23 6 0.2451 -2.8218 -0.9976 24 1 -0.4850 0.8369 -0.0732 25 1 0.3751 -2.1616 2.0430 26 1 0.3015 -3.8501 1.4843 27 1 3.0164 -3.0721 1.8339 28 1 2.4774 -4.8697 5.8394 29 1 5.2682 -3.9482 6.0469 30 1 4.4222 -6.8285 5.6020 31 1 5.9841 -6.0406 5.2206 32 1 6.4596 -7.3881 7.4025 33 1 5.4839 -6.0463 9.3086 34 1 4.4321 -3.9057 8.2535 35 1 3.2343 -5.1931 7.9216 36 1 2.3249 -3.3507 -1.6821 37 1 1.5427 -4.6177 -0.5940 38 1 -0.6580 -3.3605 -0.7107 39 1 0.1230 -2.0928 -1.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328856681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:30 Heat of formation + Delta-G solvation = -30.539404 kcal Electronic energy + Delta-G solvation = -21164.485446 eV Core-core repulsion = 17880.116905 eV Total energy + Delta-G solvation = -3284.368541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46606 -38.98174 -37.76988 -36.72558 -34.23719 -33.16487 -31.97559 -28.57941 -28.45730 -26.90548 -25.43007 -23.46700 -21.21057 -20.90600 -20.07908 -19.55734 -19.00130 -18.00229 -16.86959 -16.34105 -16.09191 -15.59294 -15.35514 -14.69584 -14.57819 -14.06022 -13.67961 -13.42077 -13.06596 -13.01253 -12.69531 -12.44714 -12.14315 -11.86788 -11.68074 -11.62930 -11.47850 -11.30976 -10.99930 -10.95133 -10.53007 -10.25591 -9.62846 -9.28597 -9.26766 -9.15474 -9.09604 -8.54107 -8.39885 -8.18954 -6.09226 -4.18960 1.75364 1.95329 2.64756 3.26616 3.34535 3.38534 3.56476 3.99124 4.29813 4.35798 4.40745 4.84177 4.92588 4.97511 5.15731 5.18405 5.33724 5.40558 5.44606 5.61696 5.69582 5.78100 5.95161 6.20456 6.27694 6.30961 6.39149 6.46808 6.55085 6.65931 6.74186 6.98135 7.07834 7.21268 7.32284 7.49355 7.80542 7.84327 8.13303 8.30997 8.50561 8.83253 9.48833 10.97760 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003785 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.294915 B = 7396.495961 C = 7892.654011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.159 3.841 11 N -0.666 5.666 12 C 0.495 3.505 13 O -0.541 6.541 14 C 0.510 3.490 15 O -0.517 6.517 16 N -0.700 5.700 17 C 0.138 3.862 18 C -0.117 4.117 19 C -0.158 4.158 20 C -0.167 4.167 21 C -0.108 4.108 22 C -0.210 4.210 23 C -0.139 4.139 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.414 0.586 28 H 0.412 0.588 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 -10.930 12.732 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.020 3.980 10 C 0.037 3.963 11 N -0.315 5.315 12 C 0.274 3.726 13 O -0.420 6.420 14 C 0.291 3.709 15 O -0.391 6.391 16 N -0.353 5.353 17 C 0.033 3.967 18 C -0.155 4.155 19 C -0.177 4.177 20 C -0.185 4.185 21 C -0.145 4.145 22 C -0.247 4.247 23 C -0.177 4.177 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.250 0.750 28 H 0.249 0.751 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.277 -10.673 12.772 18.166 hybrid contribution 0.394 0.856 -0.015 0.942 sum 7.671 -9.817 12.757 17.832 Atomic orbital electron populations 1.69988 1.05875 1.26935 1.48365 1.24986 0.94842 0.99031 0.94204 0.86614 0.80083 0.83363 0.78164 1.20637 1.21165 1.19624 1.20387 0.92801 0.88493 1.52175 0.92000 1.19028 0.99735 0.93573 0.85637 1.21220 0.83385 0.98398 0.93337 1.45895 1.12708 1.59268 1.13640 1.19916 0.88704 0.80422 0.83522 1.90713 1.30279 1.51187 1.69854 1.20533 0.89926 0.78156 0.82274 1.90759 1.31288 1.48133 1.68953 1.45732 1.11150 1.59579 1.18886 1.21872 0.86597 0.98090 0.90182 1.21831 1.00702 0.96283 0.96657 1.23248 0.99795 0.99916 0.94715 1.23155 0.98369 0.97890 0.99120 1.21624 0.99678 0.99334 0.93897 1.23033 1.00741 0.95525 1.05425 1.22474 0.90758 1.01260 1.03247 0.92854 0.90782 0.93389 0.74985 0.75127 0.87623 0.89958 0.90288 0.85605 0.85493 0.90155 0.89816 0.90211 0.91652 0.91736 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.03 12.65 55.43 0.70 -23.33 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.98 8.59 -34.44 -0.30 -13.27 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 10 C 0.16 3.52 5.53 -4.04 -0.02 3.50 16 11 N -0.67 -13.30 5.46 -60.73 -0.33 -13.63 16 12 C 0.50 9.24 7.88 -11.59 -0.09 9.14 16 13 O -0.54 -10.88 16.47 5.50 0.09 -10.79 16 14 C 0.51 8.29 7.89 -11.59 -0.09 8.20 16 15 O -0.52 -9.46 16.14 5.49 0.09 -9.37 16 16 N -0.70 -8.76 5.15 -52.58 -0.27 -9.03 16 17 C 0.14 1.46 3.53 -66.21 -0.23 1.23 16 18 C -0.12 -1.13 6.55 -26.83 -0.18 -1.30 16 19 C -0.16 -1.27 10.78 -35.70 -0.38 -1.65 16 20 C -0.17 -1.26 10.78 -35.70 -0.38 -1.64 16 21 C -0.11 -0.88 6.54 -26.83 -0.18 -1.06 16 22 C -0.21 -4.36 9.96 -26.70 -0.27 -4.63 16 23 C -0.14 -3.14 9.14 -26.70 -0.24 -3.39 16 24 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 25 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 27 H 0.41 8.20 7.84 -40.82 -0.32 7.88 16 28 H 0.41 4.64 7.92 -40.82 -0.32 4.32 16 29 H 0.11 1.26 7.54 -51.93 -0.39 0.87 16 30 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.63 7.80 -51.93 -0.41 0.23 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -28.98 337.26 -7.98 -36.96 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.63 Total: 11.14 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.69 Total: -2.76 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.10 Total: -45.99 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.18 Total: -20.16 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.98 -7.98 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328856681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.417 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds