Wall clock time and date at job start Mon Mar 30 2020 23:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99770 * 3 2 1 7 7 C 1.37876 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00330 * 175.14295 * 7 2 1 9 9 C 1.50703 * 120.00032 * 355.42383 * 7 2 1 10 10 C 1.53005 * 115.54676 * 274.92215 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81585 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21351 * 120.00387 * 5.03078 * 12 11 10 14 14 C 1.49453 * 120.00243 * 185.03773 * 12 11 10 15 15 O 1.21358 * 119.99726 * 5.08572 * 14 12 11 16 16 N 1.34769 * 120.00473 * 185.08548 * 14 12 11 17 17 C 1.46501 * 120.00011 * 179.97438 * 16 14 12 18 18 C 1.54633 * 111.03942 * 267.02361 * 17 16 14 19 19 C 1.51103 * 104.72655 * 217.33345 * 18 17 16 20 20 C 1.30528 * 111.10233 * 16.44365 * 19 18 17 21 21 C 1.51100 * 111.10678 * 359.97438 * 20 19 18 22 22 C 1.52992 * 117.50333 * 129.24725 * 9 7 2 23 23 C 1.52998 * 117.49920 * 60.58499 * 9 7 2 24 24 H 0.97005 * 120.00163 * 4.99931 * 1 2 3 25 25 H 1.09004 * 109.47254 * 54.81876 * 10 9 7 26 26 H 1.09002 * 109.46969 * 174.81524 * 10 9 7 27 27 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 28 28 H 0.97004 * 119.99839 * 0.02562 * 16 14 12 29 29 H 1.08994 * 110.91722 * 31.04137 * 17 16 14 30 30 H 1.08996 * 110.39088 * 336.15121 * 18 17 16 31 31 H 1.08999 * 110.38395 * 98.52885 * 18 17 16 32 32 H 1.08000 * 124.45078 * 196.45240 * 19 18 17 33 33 H 1.07996 * 124.44449 * 180.02562 * 20 19 18 34 34 H 1.09002 * 110.38727 * 224.76013 * 21 20 19 35 35 H 1.08995 * 110.48133 * 102.42483 * 21 20 19 36 36 H 1.09001 * 117.49686 * 0.02562 * 22 9 7 37 37 H 1.09004 * 117.49963 * 145.01627 * 22 9 7 38 38 H 1.09001 * 117.50544 * 214.98024 * 23 9 7 39 39 H 1.09001 * 117.50141 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0787 9 6 1.2546 -2.4971 0.1052 10 6 0.9189 -2.9528 1.5267 11 7 2.1581 -3.2464 2.2509 12 6 2.1056 -3.7587 3.4963 13 8 1.0362 -4.0622 3.9830 14 6 3.3644 -3.9531 4.2781 15 8 4.4232 -3.5651 3.8296 16 7 3.3237 -4.5592 5.4811 17 6 4.5578 -4.7502 6.2472 18 6 5.1841 -6.1335 5.9550 19 6 5.7398 -6.5919 7.2833 20 6 5.2357 -5.8989 8.2679 21 6 4.2603 -4.8625 7.7604 22 6 1.5728 -3.5803 -0.9273 23 6 0.2451 -2.8218 -0.9976 24 1 -0.4850 0.8369 -0.0732 25 1 0.3751 -2.1616 2.0430 26 1 0.3015 -3.8501 1.4843 27 1 3.0164 -3.0721 1.8339 28 1 2.4774 -4.8697 5.8394 29 1 5.2682 -3.9482 6.0469 30 1 4.4222 -6.8285 5.6020 31 1 5.9841 -6.0406 5.2206 32 1 6.4596 -7.3881 7.4025 33 1 5.4839 -6.0463 9.3086 34 1 4.4321 -3.9057 8.2535 35 1 3.2343 -5.1931 7.9216 36 1 2.3249 -3.3507 -1.6821 37 1 1.5427 -4.6177 -0.5940 38 1 -0.6580 -3.3605 -0.7107 39 1 0.1230 -2.0928 -1.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328856681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:29 Heat of formation + Delta-G solvation = -49.263722 kcal Electronic energy + Delta-G solvation = -21165.297393 eV Core-core repulsion = 17880.116905 eV Total energy + Delta-G solvation = -3285.180488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77017 -40.15580 -38.97149 -38.46237 -35.53640 -34.59455 -33.96294 -29.55284 -29.17804 -28.46554 -27.35623 -24.83949 -22.93315 -21.84529 -21.48596 -21.27690 -19.80890 -19.35537 -18.15161 -17.94171 -17.11467 -16.98838 -16.72634 -16.55479 -16.04853 -15.67087 -15.13167 -14.90477 -14.45130 -14.04457 -13.76110 -13.69211 -13.49563 -13.07210 -12.99582 -12.96321 -12.83153 -12.74519 -12.46330 -12.38416 -12.12129 -12.01871 -11.42557 -10.98507 -10.78169 -10.45968 -10.33329 -10.12747 -9.97000 -9.81643 -8.11079 -6.24803 0.34718 1.34418 1.36480 1.40583 1.44332 1.52520 2.14126 2.41480 2.68345 3.16447 3.39310 3.55848 3.60680 3.69629 4.08113 4.19274 4.34536 4.39512 4.50975 4.61987 4.68204 4.74054 4.80145 4.85538 4.91165 4.93861 5.01841 5.04748 5.28169 5.29922 5.35426 5.52405 5.60455 5.68028 5.76777 5.95745 5.99964 6.35329 6.44587 6.75969 6.82449 6.98112 7.44991 8.95434 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003785 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.294915 B = 7396.495961 C = 7892.654011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.057 0.943 9 C -0.003 4.003 10 C 0.175 3.825 11 N -0.669 5.669 12 C 0.496 3.504 13 O -0.555 6.555 14 C 0.516 3.484 15 O -0.540 6.540 16 N -0.679 5.679 17 C 0.129 3.871 18 C -0.116 4.116 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.105 4.105 22 C -0.181 4.181 23 C -0.145 4.145 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.415 0.585 28 H 0.420 0.580 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 -12.023 14.127 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.003 4.003 10 C 0.051 3.949 11 N -0.319 5.319 12 C 0.277 3.723 13 O -0.435 6.435 14 C 0.296 3.704 15 O -0.417 6.417 16 N -0.332 5.332 17 C 0.024 3.976 18 C -0.154 4.154 19 C -0.185 4.185 20 C -0.179 4.179 21 C -0.142 4.142 22 C -0.218 4.218 23 C -0.183 4.183 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.251 0.749 28 H 0.258 0.742 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.319 -11.793 14.200 20.247 hybrid contribution 0.072 1.150 -0.403 1.220 sum 8.391 -10.644 13.797 19.341 Atomic orbital electron populations 1.70084 1.06939 1.27372 1.49623 1.25628 0.95524 1.01788 0.94305 0.85748 0.78844 0.80065 0.78184 1.20083 1.21351 1.19514 1.20657 0.92812 0.89829 1.51373 0.92451 1.19065 1.00693 0.93961 0.86618 1.20839 0.84044 0.97482 0.92510 1.45807 1.11948 1.59851 1.14269 1.20325 0.89504 0.79410 0.83081 1.90698 1.31190 1.51611 1.70030 1.20040 0.88433 0.78805 0.83096 1.90756 1.31516 1.49711 1.69748 1.45705 1.12451 1.57626 1.17459 1.22079 0.85412 0.98349 0.91713 1.21790 1.00385 0.95503 0.97740 1.23314 1.00656 1.00891 0.93618 1.23341 0.97484 0.96900 1.00132 1.21640 1.00624 1.00283 0.91680 1.23022 0.99187 0.95999 1.03630 1.22394 0.92041 1.01517 1.02383 0.93054 0.94118 0.92589 0.74878 0.74190 0.89012 0.90130 0.91244 0.83911 0.83252 0.89329 0.88782 0.89936 0.89184 0.90612 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.30 12.65 21.45 0.27 -50.03 16 2 C 0.03 1.53 5.43 84.65 0.46 1.99 16 3 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.51 -26.47 8.59 25.60 0.22 -26.25 16 8 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 9 C 0.00 -0.12 1.47 -52.93 -0.08 -0.20 16 10 C 0.17 7.76 5.53 86.38 0.48 8.24 16 11 N -0.67 -26.66 5.46 -464.41 -2.54 -29.20 16 12 C 0.50 18.33 7.88 87.27 0.69 19.01 16 13 O -0.56 -22.03 16.47 -3.25 -0.05 -22.08 16 14 C 0.52 16.48 7.89 87.27 0.69 17.16 16 15 O -0.54 -19.64 16.14 -3.27 -0.05 -19.69 16 16 N -0.68 -16.21 5.15 -438.61 -2.26 -18.47 16 17 C 0.13 2.56 3.53 46.10 0.16 2.72 16 18 C -0.12 -2.09 6.55 30.53 0.20 -1.89 16 19 C -0.17 -2.27 10.78 26.26 0.28 -1.98 16 20 C -0.16 -1.94 10.78 26.26 0.28 -1.66 16 21 C -0.10 -1.47 6.54 30.53 0.20 -1.27 16 22 C -0.18 -7.27 9.96 30.61 0.30 -6.97 16 23 C -0.15 -6.52 9.14 30.62 0.28 -6.24 16 24 H 0.26 13.97 8.32 -92.70 -0.77 13.20 16 25 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 27 H 0.41 16.40 7.84 -92.71 -0.73 15.67 16 28 H 0.42 8.80 7.92 -92.71 -0.73 8.06 16 29 H 0.09 2.13 7.54 -2.39 -0.02 2.11 16 30 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.15 7.80 -2.39 -0.02 1.13 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -61.47 337.26 1.17 -60.30 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.39 Total: 31.60 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.17 Total: 2.68 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.52 Total: -97.69 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.11 Total: -41.77 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.47 1.17 -60.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328856681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.036 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds