Wall clock time and date at job start Mon Mar 30 2020 23:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46737 * 85.01478 * 3 2 1 5 5 H 1.48501 * 109.47252 * 205.01500 * 3 2 1 6 6 H 1.48497 * 109.46896 * 325.01753 * 3 2 1 7 7 C 1.38810 * 120.00135 * 180.27705 * 2 1 3 8 8 H 1.07997 * 120.00237 * 186.21481 * 7 2 1 9 9 N 1.36936 * 119.99705 * 6.21647 * 7 2 1 10 10 C 1.47067 * 136.05956 * 6.36808 * 9 7 2 11 11 C 1.53761 * 87.88834 * 152.96865 * 10 9 7 12 12 C 1.52998 * 114.26627 * 139.79217 * 11 10 9 13 13 C 1.53004 * 109.46972 * 88.00976 * 12 11 10 14 14 O 1.42897 * 109.46713 * 185.07800 * 13 12 11 15 15 N 1.46494 * 114.39326 * 272.67567 * 11 10 9 16 16 C 1.34779 * 119.99898 * 156.10372 * 15 11 10 17 17 O 1.21610 * 120.00204 * 5.03938 * 16 15 11 18 18 C 1.43201 * 119.99921 * 185.04141 * 16 15 11 19 19 C 7.19412 * 99.29991 * 230.21309 * 2 1 3 20 20 C 8.28814 * 101.02076 * 237.43391 * 2 1 3 21 21 C 1.53001 * 117.50276 * 18.42765 * 20 19 18 22 22 C 1.52993 * 117.50100 * 309.80410 * 20 19 18 23 23 C 1.47074 * 136.05658 * 186.74415 * 9 7 2 24 24 H 0.97007 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.46767 * 267.69818 * 10 9 7 26 26 H 1.08998 * 113.46899 * 38.13901 * 10 9 7 27 27 H 1.08997 * 109.46916 * 208.01032 * 12 11 10 28 28 H 1.09002 * 109.46999 * 328.00691 * 12 11 10 29 29 H 1.08994 * 109.47048 * 305.07888 * 13 12 11 30 30 H 1.08998 * 109.46882 * 65.07700 * 13 12 11 31 31 H 0.96702 * 114.00071 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00205 * 336.10898 * 15 11 10 33 33 H 1.09001 * 115.54948 * 164.12934 * 20 19 18 34 34 H 1.09005 * 117.49276 * 359.97438 * 21 20 19 35 35 H 1.08994 * 117.50329 * 145.01754 * 21 20 19 36 36 H 1.09007 * 117.50106 * 214.98099 * 22 20 19 37 37 H 1.09000 * 117.50074 * 359.97438 * 22 20 19 38 38 H 1.09004 * 113.46723 * 321.86247 * 23 9 7 39 39 H 1.08999 * 113.46419 * 92.24126 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5965 1.4121 -0.5920 6 1 1.5043 2.6200 -0.8027 7 6 2.0102 -1.2021 -0.0058 8 1 3.0855 -1.2054 0.0954 9 7 1.3316 -2.3839 -0.1399 10 6 -0.0584 -2.7822 -0.4086 11 6 0.4919 -4.0823 -1.0178 12 6 -0.3190 -5.3322 -0.6697 13 6 -1.4369 -5.5175 -1.6979 14 8 -2.2655 -6.6145 -1.3079 15 7 0.8294 -3.9886 -2.4402 16 6 1.7319 -4.8342 -2.9758 17 8 2.1978 -5.7329 -2.3019 18 6 2.1423 -4.6743 -4.3384 19 6 2.4788 -4.5433 -5.4555 20 6 2.9006 -4.3790 -6.8562 21 6 3.1898 -5.6480 -7.6604 22 6 4.3426 -4.7497 -7.2078 23 6 1.6707 -3.8134 -0.0721 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6467 -2.9414 0.4951 26 1 -0.5616 -2.1410 -1.1323 27 1 0.3346 -6.2044 -0.6824 28 1 -0.7538 -5.2184 0.3233 29 1 -2.0371 -4.6092 -1.7496 30 1 -1.0009 -5.7211 -2.6759 31 1 -2.9968 -6.7905 -1.9156 32 1 0.4034 -3.3179 -2.9966 33 1 2.4536 -3.5379 -7.3862 34 1 3.0682 -6.6046 -7.1521 35 1 2.9331 -5.6421 -8.7197 36 1 4.8444 -4.1528 -7.9695 37 1 4.9793 -5.1149 -6.4019 38 1 2.6407 -4.0506 -0.5092 39 1 1.5391 -4.2440 0.9205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329655370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:45 Heat of formation + Delta-G solvation = 53.036190 kcal Electronic energy + Delta-G solvation = -21326.467846 eV Core-core repulsion = 18045.723415 eV Total energy + Delta-G solvation = -3280.744431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07569 -37.93670 -37.62822 -36.55576 -33.60181 -32.76073 -31.76375 -30.58676 -27.18811 -25.06278 -24.87282 -23.55378 -22.71287 -22.15252 -21.06706 -18.89916 -18.49708 -17.27380 -16.77780 -16.70282 -15.33084 -15.22676 -15.01055 -14.82719 -14.68200 -14.14216 -13.64833 -13.57336 -12.94234 -12.74546 -12.63864 -12.11649 -11.83434 -11.70810 -11.51519 -11.42552 -11.19862 -11.00032 -10.88290 -10.71065 -10.36179 -10.09833 -9.96477 -9.87901 -9.80865 -9.65174 -9.24691 -8.91753 -8.58189 -6.94364 -5.84649 -3.14798 1.65154 2.35623 3.24057 3.35835 3.38466 3.41645 3.43470 3.99312 4.23144 4.33689 4.46529 4.50433 4.69943 4.79486 5.03391 5.20147 5.30577 5.38859 5.41754 5.43713 5.54022 5.61874 5.74240 5.77842 5.79447 5.92502 6.22035 6.25780 6.49084 6.54136 6.58329 6.79471 7.00677 7.21764 7.29034 7.41175 7.76008 7.82810 7.89634 8.47694 8.97868 9.64006 10.56704 11.34311 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.005636 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.861503 B = 4967.052536 C = 6905.452777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.606 5.606 10 C 0.168 3.832 11 C 0.116 3.884 12 C -0.109 4.109 13 C 0.082 3.918 14 O -0.576 6.576 15 N -0.674 5.674 16 C 0.632 3.368 17 O -0.525 6.525 18 C -0.201 4.201 19 C -0.072 4.072 20 C -0.061 4.061 21 C -0.162 4.162 22 C -0.161 4.161 23 C 0.120 3.880 24 H 0.254 0.746 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.373 0.627 32 H 0.405 0.595 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -9.623 -13.694 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.331 5.331 10 C 0.042 3.958 11 C 0.028 3.972 12 C -0.149 4.149 13 C 0.005 3.995 14 O -0.381 6.381 15 N -0.323 5.323 16 C 0.418 3.582 17 O -0.402 6.402 18 C -0.204 4.204 19 C -0.074 4.074 20 C -0.078 4.078 21 C -0.198 4.198 22 C -0.198 4.198 23 C -0.007 4.007 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.219 0.781 32 H 0.240 0.760 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.537 -9.870 -12.640 16.046 hybrid contribution -0.172 1.463 -0.603 1.592 sum 0.365 -8.407 -13.243 15.690 Atomic orbital electron populations 1.69825 1.04992 1.25476 1.56554 1.24790 0.95673 0.97551 1.02293 0.86101 0.78728 0.83385 0.77577 1.21556 1.20555 1.21601 1.18937 0.90392 0.81381 1.43451 0.90093 1.45622 1.05064 0.99455 1.82954 1.22328 0.89119 0.87587 0.96786 1.22123 0.98610 0.96270 0.80201 1.21618 0.95783 0.98256 0.99232 1.22118 0.91832 0.88246 0.97320 1.86480 1.44809 1.53034 1.53799 1.45274 1.41913 1.35065 1.10061 1.14628 0.79380 0.82119 0.82030 1.90823 1.55692 1.32625 1.61104 1.20883 1.03341 1.02778 0.93404 1.21251 0.96287 0.97621 0.92281 1.18867 1.00588 1.01336 0.87040 1.23095 1.02147 0.94389 1.00216 1.23100 0.90158 1.02898 1.03615 1.22674 0.96069 0.86418 0.95544 0.93599 0.93436 0.91662 0.90423 0.90011 0.93449 0.94247 0.78080 0.76027 0.84775 0.88127 0.87507 0.87452 0.88037 0.93191 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 11.81 55.49 0.66 -25.94 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.21 -5.99 10.73 -15.06 -0.16 -6.15 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 N -0.61 -15.39 3.76 -184.55 -0.69 -16.09 16 10 C 0.17 3.76 6.59 -8.36 -0.06 3.70 16 11 C 0.12 2.19 0.76 -131.57 -0.10 2.09 16 12 C -0.11 -1.85 5.03 -26.73 -0.13 -1.99 16 13 C 0.08 1.20 6.65 37.16 0.25 1.45 16 14 O -0.58 -8.05 13.66 -35.23 -0.48 -8.54 16 15 N -0.67 -11.91 4.30 -49.71 -0.21 -12.13 16 16 C 0.63 11.65 7.15 -14.33 -0.10 11.55 16 17 O -0.52 -11.04 15.36 5.27 0.08 -10.95 16 18 C -0.20 -3.29 13.62 -38.84 -0.53 -3.82 16 19 C -0.07 -1.00 13.47 -37.12 -0.50 -1.50 16 20 C -0.06 -0.59 6.22 -93.41 -0.58 -1.17 16 21 C -0.16 -1.23 10.21 -26.73 -0.27 -1.50 16 22 C -0.16 -1.30 10.21 -26.74 -0.27 -1.57 16 23 C 0.12 2.63 7.63 -8.50 -0.06 2.56 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 26 H 0.07 1.54 7.58 -51.93 -0.39 1.15 16 27 H 0.08 1.41 7.46 -51.93 -0.39 1.02 16 28 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.57 7.67 -51.93 -0.40 0.17 16 31 H 0.37 3.31 9.12 45.56 0.42 3.73 16 32 H 0.40 6.57 8.73 -40.82 -0.36 6.21 16 33 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.15 7.27 -51.93 -0.38 0.77 16 39 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -33.63 340.27 -8.00 -41.62 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.82 Total: 6.60 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.62 Total: 3.38 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.25 Total: -54.16 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.40 Total: -19.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.63 -8.00 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329655370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.658 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds