Wall clock time and date at job start Mon Mar 30 2020 23:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46737 * 85.01478 * 3 2 1 5 5 H 1.48501 * 109.47252 * 205.01500 * 3 2 1 6 6 H 1.48497 * 109.46896 * 325.01753 * 3 2 1 7 7 C 1.38810 * 120.00135 * 180.27705 * 2 1 3 8 8 H 1.07997 * 120.00237 * 186.21481 * 7 2 1 9 9 N 1.36936 * 119.99705 * 6.21647 * 7 2 1 10 10 C 1.47067 * 136.05956 * 6.36808 * 9 7 2 11 11 C 1.53761 * 87.88834 * 152.96865 * 10 9 7 12 12 C 1.52998 * 114.26627 * 139.79217 * 11 10 9 13 13 C 1.53004 * 109.46972 * 88.00976 * 12 11 10 14 14 O 1.42897 * 109.46713 * 185.07800 * 13 12 11 15 15 N 1.46494 * 114.39326 * 272.67567 * 11 10 9 16 16 C 1.34779 * 119.99898 * 156.10372 * 15 11 10 17 17 O 1.21610 * 120.00204 * 5.03938 * 16 15 11 18 18 C 1.43201 * 119.99921 * 185.04141 * 16 15 11 19 19 C 7.19412 * 99.29991 * 230.21309 * 2 1 3 20 20 C 8.28814 * 101.02076 * 237.43391 * 2 1 3 21 21 C 1.53001 * 117.50276 * 18.42765 * 20 19 18 22 22 C 1.52993 * 117.50100 * 309.80410 * 20 19 18 23 23 C 1.47074 * 136.05658 * 186.74415 * 9 7 2 24 24 H 0.97007 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.46767 * 267.69818 * 10 9 7 26 26 H 1.08998 * 113.46899 * 38.13901 * 10 9 7 27 27 H 1.08997 * 109.46916 * 208.01032 * 12 11 10 28 28 H 1.09002 * 109.46999 * 328.00691 * 12 11 10 29 29 H 1.08994 * 109.47048 * 305.07888 * 13 12 11 30 30 H 1.08998 * 109.46882 * 65.07700 * 13 12 11 31 31 H 0.96702 * 114.00071 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00205 * 336.10898 * 15 11 10 33 33 H 1.09001 * 115.54948 * 164.12934 * 20 19 18 34 34 H 1.09005 * 117.49276 * 359.97438 * 21 20 19 35 35 H 1.08994 * 117.50329 * 145.01754 * 21 20 19 36 36 H 1.09007 * 117.50106 * 214.98099 * 22 20 19 37 37 H 1.09000 * 117.50074 * 359.97438 * 22 20 19 38 38 H 1.09004 * 113.46723 * 321.86247 * 23 9 7 39 39 H 1.08999 * 113.46419 * 92.24126 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5965 1.4121 -0.5920 6 1 1.5043 2.6200 -0.8027 7 6 2.0102 -1.2021 -0.0058 8 1 3.0855 -1.2054 0.0954 9 7 1.3316 -2.3839 -0.1399 10 6 -0.0584 -2.7822 -0.4086 11 6 0.4919 -4.0823 -1.0178 12 6 -0.3190 -5.3322 -0.6697 13 6 -1.4369 -5.5175 -1.6979 14 8 -2.2655 -6.6145 -1.3079 15 7 0.8294 -3.9886 -2.4402 16 6 1.7319 -4.8342 -2.9758 17 8 2.1978 -5.7329 -2.3019 18 6 2.1423 -4.6743 -4.3384 19 6 2.4788 -4.5433 -5.4555 20 6 2.9006 -4.3790 -6.8562 21 6 3.1898 -5.6480 -7.6604 22 6 4.3426 -4.7497 -7.2078 23 6 1.6707 -3.8134 -0.0721 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6467 -2.9414 0.4951 26 1 -0.5616 -2.1410 -1.1323 27 1 0.3346 -6.2044 -0.6824 28 1 -0.7538 -5.2184 0.3233 29 1 -2.0371 -4.6092 -1.7496 30 1 -1.0009 -5.7211 -2.6759 31 1 -2.9968 -6.7905 -1.9156 32 1 0.4034 -3.3179 -2.9966 33 1 2.4536 -3.5379 -7.3862 34 1 3.0682 -6.6046 -7.1521 35 1 2.9331 -5.6421 -8.7197 36 1 4.8444 -4.1528 -7.9695 37 1 4.9793 -5.1149 -6.4019 38 1 2.6407 -4.0506 -0.5092 39 1 1.5391 -4.2440 0.9205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329655370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:44 Heat of formation + Delta-G solvation = 28.565091 kcal Electronic energy + Delta-G solvation = -21327.528992 eV Core-core repulsion = 18045.723415 eV Total energy + Delta-G solvation = -3281.805577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65843 -39.42117 -38.48262 -37.74226 -35.28655 -34.20957 -33.40844 -32.04019 -29.06596 -26.68364 -26.31581 -25.06138 -23.30410 -23.29305 -22.74867 -20.46143 -19.84817 -18.83107 -18.32859 -17.66260 -17.03026 -16.61143 -16.36465 -16.24791 -15.89292 -15.69296 -15.32953 -15.02703 -14.58961 -14.36262 -13.54995 -13.42602 -13.15341 -13.09996 -12.89873 -12.81690 -12.65583 -12.43107 -12.35725 -12.19832 -11.93747 -11.78344 -11.58906 -11.16710 -11.05084 -10.94167 -10.79065 -10.74642 -10.15433 -8.98321 -7.97179 -5.28909 0.41259 1.17097 1.44813 1.45613 1.55211 1.94992 2.29335 2.43588 3.05416 3.08687 3.15740 3.26029 3.36737 3.54113 3.81107 3.99448 4.03264 4.13781 4.27571 4.33551 4.43951 4.52935 4.64478 4.71188 4.75671 4.83993 4.87707 4.95870 5.06885 5.08557 5.11005 5.18624 5.21031 5.38589 5.58850 5.83569 6.13134 6.39616 6.86247 6.90956 7.03945 7.52823 8.52630 9.21315 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.005636 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.861503 B = 4967.052536 C = 6905.452777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.054 4.054 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.288 1.288 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.174 3.826 11 C 0.145 3.855 12 C -0.104 4.104 13 C 0.091 3.909 14 O -0.589 6.589 15 N -0.671 5.671 16 C 0.636 3.364 17 O -0.559 6.559 18 C -0.265 4.265 19 C -0.029 4.029 20 C -0.088 4.088 21 C -0.145 4.145 22 C -0.156 4.156 23 C 0.115 3.885 24 H 0.252 0.748 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.397 0.603 32 H 0.412 0.588 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.035 0.965 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -9.604 -16.032 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.248 4.248 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.198 1.198 6 H -0.214 1.214 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.048 3.952 11 C 0.057 3.943 12 C -0.144 4.144 13 C 0.014 3.986 14 O -0.397 6.397 15 N -0.320 5.320 16 C 0.424 3.576 17 O -0.439 6.439 18 C -0.268 4.268 19 C -0.031 4.031 20 C -0.106 4.106 21 C -0.181 4.181 22 C -0.192 4.192 23 C -0.011 4.011 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.247 0.753 32 H 0.248 0.752 33 H 0.178 0.822 34 H 0.109 0.891 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.638 -9.872 -15.001 17.969 hybrid contribution -0.170 1.399 0.048 1.410 sum 0.469 -8.474 -14.953 17.194 Atomic orbital electron populations 1.69967 1.06170 1.25989 1.57324 1.25545 0.96560 1.00464 1.02231 0.85089 0.77738 0.79225 0.77397 1.21367 1.19799 1.21390 1.19205 0.90640 0.82818 1.43460 0.90642 1.45880 1.06504 1.00038 1.83203 1.22245 0.87796 0.88735 0.96420 1.21705 0.96552 0.95654 0.80420 1.21517 0.96251 0.96315 1.00306 1.21920 0.91387 0.89066 0.96271 1.86413 1.45757 1.52563 1.54996 1.45207 1.42055 1.35263 1.09456 1.14785 0.78635 0.81355 0.82793 1.90787 1.56829 1.34017 1.62314 1.20607 1.06446 1.06061 0.93704 1.22189 0.93436 0.94608 0.92869 1.19350 1.02408 1.03843 0.84957 1.23236 1.00714 0.92842 1.01346 1.23234 0.89277 1.03032 1.03706 1.22799 0.96618 0.84973 0.96735 0.93873 0.93930 0.93167 0.91506 0.89722 0.92460 0.93969 0.75328 0.75200 0.82212 0.89062 0.84398 0.84716 0.89498 0.94700 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.20 11.81 21.65 0.26 -54.94 16 2 C -0.05 -3.03 5.50 84.86 0.47 -2.57 16 3 Si 0.98 45.29 29.56 68.60 2.03 47.32 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.23 -13.28 10.73 84.03 0.90 -12.38 16 8 H 0.08 4.24 7.84 -2.91 -0.02 4.22 16 9 N -0.63 -32.84 3.76 -737.79 -2.78 -35.61 16 10 C 0.17 7.93 6.59 83.27 0.55 8.48 16 11 C 0.14 5.59 0.76 4.16 0.00 5.59 16 12 C -0.10 -3.53 5.03 30.59 0.15 -3.38 16 13 C 0.09 2.58 6.65 71.98 0.48 3.05 16 14 O -0.59 -15.46 13.66 -148.98 -2.03 -17.50 16 15 N -0.67 -24.16 4.30 -429.44 -1.85 -26.01 16 16 C 0.64 24.05 7.15 85.49 0.61 24.67 16 17 O -0.56 -24.27 15.36 -4.06 -0.06 -24.33 16 18 C -0.27 -8.76 13.62 30.02 0.41 -8.35 16 19 C -0.03 -0.76 13.47 31.13 0.42 -0.34 16 20 C -0.09 -1.45 6.22 -12.60 -0.08 -1.53 16 21 C -0.14 -1.72 10.21 30.59 0.31 -1.41 16 22 C -0.16 -2.06 10.21 30.59 0.31 -1.74 16 23 C 0.12 5.20 7.63 83.18 0.63 5.83 16 24 H 0.25 14.23 8.31 -92.70 -0.77 13.45 16 25 H 0.04 1.99 7.92 -2.39 -0.02 1.97 16 26 H 0.05 2.42 7.58 -2.39 -0.02 2.41 16 27 H 0.07 2.44 7.46 -2.39 -0.02 2.42 16 28 H 0.08 2.80 7.87 -2.39 -0.02 2.79 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.17 7.67 -2.39 -0.02 1.15 16 31 H 0.40 6.17 9.12 -74.06 -0.68 5.49 16 32 H 0.41 13.58 8.73 -92.71 -0.81 12.77 16 33 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.03 1.66 7.27 -2.38 -0.02 1.65 16 39 H 0.05 2.32 8.11 -2.39 -0.02 2.30 16 Total: -1.00 -73.36 340.27 0.33 -73.03 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.40 Total: 22.12 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.17 Total: 15.92 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.37 Total: -116.56 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.10 Total: -41.83 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.36 0.33 -73.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329655370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.597 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds