Wall clock time and date at job start Mon Mar 30 2020 23:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35905 * 116.99847 * 2 1 4 4 C 1.38736 * 120.05354 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.94456 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05290 * 0.02734 * 5 4 3 7 7 C 1.50708 * 119.94277 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46778 * 89.99889 * 7 6 5 9 9 O 1.45207 * 109.46807 * 179.97438 * 8 7 6 10 10 C 1.34227 * 116.99705 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.50707 * 119.99922 * 179.97438 * 10 9 8 13 13 H 1.09005 * 109.46877 * 60.00146 * 12 10 9 14 14 C 1.53000 * 109.47003 * 300.00449 * 12 10 9 15 15 C 1.50696 * 109.47007 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38258 * 120.11526 * 0.24937 * 6 5 4 24 24 C 1.38149 * 120.05177 * 359.45224 * 23 6 5 25 25 H 1.08999 * 109.47147 * 59.99640 * 1 2 3 26 26 H 1.09000 * 109.47487 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47325 * 299.99885 * 1 2 3 28 28 H 1.08001 * 120.02673 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97623 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.46923 * 330.00158 * 7 6 5 31 31 H 1.08994 * 109.47283 * 209.99839 * 7 6 5 32 32 H 1.09001 * 109.47536 * 60.00157 * 8 7 6 33 33 H 1.09005 * 109.47735 * 299.99612 * 8 7 6 34 34 H 1.08998 * 109.46637 * 179.97438 * 14 12 10 35 35 H 1.08997 * 109.46749 * 299.99588 * 14 12 10 36 36 H 1.08996 * 109.47024 * 59.99731 * 14 12 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.07999 * 119.97787 * 179.70447 * 23 6 5 39 39 H 1.08001 * 120.02562 * 180.25388 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.2180 5.4739 -1.4393 9 8 4.8766 6.7680 -1.4382 10 6 5.1541 7.3115 -2.6337 11 8 4.8560 6.7257 -3.6476 12 6 5.8363 8.6531 -2.7115 13 1 6.8058 8.5969 -2.2164 14 6 4.9700 9.7067 -2.0184 15 6 6.0320 9.0341 -4.1563 16 1 5.6956 8.3713 -4.9399 17 6 6.6405 10.2289 -4.4778 18 7 6.8109 10.5616 -5.7387 19 14 7.2229 11.3748 -3.1225 20 1 6.1297 12.3137 -2.7643 21 1 7.6015 10.5771 -1.9284 22 1 8.4008 12.1445 -3.5973 23 6 1.9210 3.6048 0.0069 24 6 1.2915 2.3751 0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.0208 0.3799 0.0005 29 1 5.1344 2.5750 0.0011 30 1 4.9437 4.9379 0.5169 31 1 3.3578 5.7460 0.5169 32 1 3.2602 5.5546 -1.9534 33 1 4.8462 4.7465 -1.9535 34 1 5.4637 10.6769 -2.0743 35 1 4.0006 9.7628 -2.5135 36 1 4.8289 9.4308 -0.9734 37 1 7.2387 11.4023 -5.9649 38 1 1.3341 4.5114 0.0121 39 1 0.2128 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330230196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:25 Heat of formation + Delta-G solvation = -105.098880 kcal Electronic energy + Delta-G solvation = -20578.361316 eV Core-core repulsion = 17258.466883 eV Total energy + Delta-G solvation = -3319.894433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41645 -39.66488 -38.02607 -35.94894 -33.97173 -33.00651 -31.34316 -31.27617 -28.85570 -27.32880 -25.18408 -24.22801 -22.92721 -22.60957 -20.99922 -19.75673 -18.42392 -17.06845 -16.63785 -16.29836 -16.04033 -15.90125 -15.59631 -15.37888 -14.54015 -14.45926 -14.18236 -13.79917 -13.45418 -13.30543 -12.78012 -12.72179 -12.33588 -12.26998 -11.94528 -11.77735 -11.58567 -11.38708 -11.10516 -11.04661 -10.95435 -10.67121 -10.37104 -10.04813 -9.67655 -9.24292 -9.22758 -9.15859 -8.64097 -8.33101 -6.11822 -4.14357 1.11041 1.15441 2.97256 3.17449 3.23420 3.28703 3.31932 3.35161 3.61383 4.33395 4.50666 4.61617 4.75315 4.78659 4.79838 4.99814 5.09751 5.13654 5.17768 5.19298 5.27480 5.41093 5.52625 5.72009 5.74680 5.88593 6.03039 6.05120 6.12216 6.16005 6.32837 6.43873 6.45223 6.51980 6.71173 7.08655 7.10628 7.15492 7.49085 8.40561 8.75302 9.03801 9.45074 11.00554 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.002804 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.490828 B = 9983.330102 C =10132.015191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.075 4.075 8 C 0.069 3.931 9 O -0.369 6.369 10 C 0.473 3.527 11 O -0.503 6.503 12 C 0.025 3.975 13 H 0.064 0.936 14 C -0.145 4.145 15 C -0.518 4.518 16 H 0.094 0.906 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.884 3.116 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.294 1.294 23 C -0.072 4.072 24 C -0.207 4.207 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 -16.716 16.044 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.006 4.006 9 O -0.288 6.288 10 C 0.316 3.684 11 O -0.388 6.388 12 C 0.005 3.995 13 H 0.081 0.919 14 C -0.203 4.203 15 C -0.555 4.555 16 H 0.112 0.888 17 C -0.128 4.128 18 N -0.529 5.529 19 Si 0.713 3.287 20 H -0.203 1.203 21 H -0.189 1.189 22 H -0.221 1.221 23 C -0.090 4.090 24 C -0.225 4.225 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.685 -16.985 15.594 25.413 hybrid contribution -0.074 0.708 0.455 0.845 sum -10.759 -16.277 16.049 25.264 Atomic orbital electron populations 1.23052 0.78403 1.03902 1.01432 1.86062 1.21397 1.27049 1.88797 1.19060 0.92429 0.84117 0.96734 1.20426 0.91348 0.98687 1.06398 1.20940 1.00110 0.90907 0.97099 1.19636 0.93549 0.94728 1.03718 1.20439 1.01549 0.93175 0.96018 1.22835 0.97534 0.83545 0.96652 1.86542 1.72014 1.34524 1.35715 1.24500 0.75620 0.88287 0.80011 1.90552 1.49292 1.62552 1.36404 1.19135 0.95133 0.85019 1.00187 0.91869 1.22086 1.00695 0.98916 0.98566 1.20924 1.39889 1.05756 0.88971 0.88789 1.24926 0.95060 0.97373 0.95450 1.69871 1.42962 1.23441 1.16642 0.86912 0.77974 0.81323 0.82462 1.20259 1.18909 1.22103 1.20904 0.93967 0.97233 0.96944 1.21221 1.00029 0.92300 1.08975 0.92564 0.88275 0.92659 0.85123 0.84998 0.89851 0.89941 0.91702 0.91604 0.93032 0.92412 0.93656 0.92341 0.85483 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.18 10.50 -19.44 -0.20 -3.38 16 3 C 0.12 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 5 C -0.07 -0.75 9.69 -39.61 -0.38 -1.13 16 6 C -0.12 -1.27 5.13 -104.60 -0.54 -1.80 16 7 C -0.07 -0.85 5.72 -27.88 -0.16 -1.01 16 8 C 0.07 1.05 5.45 37.16 0.20 1.25 16 9 O -0.37 -6.91 10.12 -39.25 -0.40 -7.30 16 10 C 0.47 10.78 7.25 36.01 0.26 11.04 16 11 O -0.50 -12.91 15.21 -18.75 -0.29 -13.20 16 12 C 0.02 0.59 2.33 -92.92 -0.22 0.38 16 13 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 14 C -0.15 -3.08 8.61 37.16 0.32 -2.76 16 15 C -0.52 -14.93 8.96 -34.44 -0.31 -15.23 16 16 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 17 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 18 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 19 Si 0.88 21.14 24.37 -169.99 -4.14 17.00 16 20 H -0.28 -6.36 6.87 56.52 0.39 -5.98 16 21 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.07 -0.74 9.69 -39.61 -0.38 -1.13 16 24 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 25 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -33.27 326.89 -6.09 -39.37 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.44 Total: -0.38 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.32 Total: -10.51 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.89 Total: -23.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.27 -6.09 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.732 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds