Wall clock time and date at job start Mon Mar 30 2020 23:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35905 * 116.99847 * 2 1 4 4 C 1.38736 * 120.05354 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.94456 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05290 * 0.02734 * 5 4 3 7 7 C 1.50708 * 119.94277 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46778 * 89.99889 * 7 6 5 9 9 O 1.45207 * 109.46807 * 179.97438 * 8 7 6 10 10 C 1.34227 * 116.99705 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.50707 * 119.99922 * 179.97438 * 10 9 8 13 13 H 1.09005 * 109.46877 * 60.00146 * 12 10 9 14 14 C 1.53000 * 109.47003 * 300.00449 * 12 10 9 15 15 C 1.50696 * 109.47007 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38258 * 120.11526 * 0.24937 * 6 5 4 24 24 C 1.38149 * 120.05177 * 359.45224 * 23 6 5 25 25 H 1.08999 * 109.47147 * 59.99640 * 1 2 3 26 26 H 1.09000 * 109.47487 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47325 * 299.99885 * 1 2 3 28 28 H 1.08001 * 120.02673 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97623 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.46923 * 330.00158 * 7 6 5 31 31 H 1.08994 * 109.47283 * 209.99839 * 7 6 5 32 32 H 1.09001 * 109.47536 * 60.00157 * 8 7 6 33 33 H 1.09005 * 109.47735 * 299.99612 * 8 7 6 34 34 H 1.08998 * 109.46637 * 179.97438 * 14 12 10 35 35 H 1.08997 * 109.46749 * 299.99588 * 14 12 10 36 36 H 1.08996 * 109.47024 * 59.99731 * 14 12 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.07999 * 119.97787 * 179.70447 * 23 6 5 39 39 H 1.08001 * 120.02562 * 180.25388 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.2180 5.4739 -1.4393 9 8 4.8766 6.7680 -1.4382 10 6 5.1541 7.3115 -2.6337 11 8 4.8560 6.7257 -3.6476 12 6 5.8363 8.6531 -2.7115 13 1 6.8058 8.5969 -2.2164 14 6 4.9700 9.7067 -2.0184 15 6 6.0320 9.0341 -4.1563 16 1 5.6956 8.3713 -4.9399 17 6 6.6405 10.2289 -4.4778 18 7 6.8109 10.5616 -5.7387 19 14 7.2229 11.3748 -3.1225 20 1 6.1297 12.3137 -2.7643 21 1 7.6015 10.5771 -1.9284 22 1 8.4008 12.1445 -3.5973 23 6 1.9210 3.6048 0.0069 24 6 1.2915 2.3751 0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.0208 0.3799 0.0005 29 1 5.1344 2.5750 0.0011 30 1 4.9437 4.9379 0.5169 31 1 3.3578 5.7460 0.5169 32 1 3.2602 5.5546 -1.9534 33 1 4.8462 4.7465 -1.9535 34 1 5.4637 10.6769 -2.0743 35 1 4.0006 9.7628 -2.5135 36 1 4.8289 9.4308 -0.9734 37 1 7.2387 11.4023 -5.9649 38 1 1.3341 4.5114 0.0121 39 1 0.2128 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330230196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:25 Heat of formation + Delta-G solvation = -125.706333 kcal Electronic energy + Delta-G solvation = -20579.254923 eV Core-core repulsion = 17258.466883 eV Total energy + Delta-G solvation = -3320.788039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44672 -41.06331 -38.82395 -37.54755 -35.95430 -34.05200 -33.30842 -32.05848 -29.71121 -28.02430 -27.17291 -25.68588 -24.07086 -23.58602 -21.87351 -21.50343 -19.11776 -18.99711 -18.12112 -17.70661 -17.47124 -17.02177 -16.66011 -16.32378 -16.17245 -15.45020 -15.18602 -14.85732 -14.74741 -14.52522 -14.27106 -14.04064 -13.76377 -13.38530 -13.03029 -12.94104 -12.76054 -12.65826 -12.58379 -12.46302 -12.19748 -11.85354 -11.77003 -11.50604 -11.43493 -11.27650 -11.06031 -10.76514 -9.98759 -9.11148 -8.31294 -6.41825 0.34038 0.36740 1.33854 1.40485 1.41891 1.53080 1.82992 2.32881 2.36570 2.74937 3.01962 3.78018 3.81897 3.92490 4.01076 4.05324 4.20405 4.27686 4.37633 4.38365 4.39676 4.42570 4.48257 4.56533 4.65524 4.71924 4.77367 4.85518 4.96161 5.04486 5.09084 5.27913 5.35198 5.36908 5.42304 5.52086 5.64929 5.78800 6.21882 6.41928 6.70157 6.98874 7.23309 8.85637 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.002804 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.490828 B = 9983.330102 C =10132.015191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.130 4.130 7 C -0.061 4.061 8 C 0.064 3.936 9 O -0.355 6.355 10 C 0.478 3.522 11 O -0.544 6.544 12 C 0.018 3.982 13 H 0.081 0.919 14 C -0.140 4.140 15 C -0.534 4.534 16 H 0.035 0.965 17 C 0.014 3.986 18 N -0.946 5.946 19 Si 0.956 3.044 20 H -0.256 1.256 21 H -0.231 1.231 22 H -0.296 1.296 23 C -0.079 4.079 24 C -0.211 4.211 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 -16.402 19.363 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.183 4.183 5 C -0.096 4.096 6 C -0.131 4.131 7 C -0.098 4.098 8 C -0.010 4.010 9 O -0.272 6.272 10 C 0.323 3.677 11 O -0.433 6.433 12 C -0.001 4.001 13 H 0.098 0.902 14 C -0.197 4.197 15 C -0.571 4.571 16 H 0.053 0.947 17 C -0.184 4.184 18 N -0.585 5.585 19 Si 0.780 3.220 20 H -0.182 1.182 21 H -0.154 1.154 22 H -0.224 1.224 23 C -0.097 4.097 24 C -0.230 4.230 25 H 0.079 0.921 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.193 -16.700 18.955 27.631 hybrid contribution -0.019 0.420 -0.644 0.769 sum -11.212 -16.280 18.311 26.945 Atomic orbital electron populations 1.23333 0.76523 1.05561 1.02208 1.86042 1.23436 1.26902 1.88677 1.19291 0.92786 0.84735 0.96548 1.20651 0.91788 0.99179 1.06720 1.21143 1.00891 0.90828 0.96697 1.19662 0.93972 0.94483 1.04954 1.20365 1.02625 0.93656 0.93119 1.23173 0.96666 0.81565 0.99572 1.86492 1.71696 1.36013 1.32999 1.24275 0.74947 0.87974 0.80497 1.90546 1.51095 1.63563 1.38090 1.19091 0.96876 0.86763 0.97374 0.90150 1.22005 0.99518 0.97621 1.00523 1.21032 1.40111 1.05296 0.90687 0.94682 1.25958 0.94808 0.99228 0.98388 1.70048 1.44354 1.24439 1.19690 0.85754 0.77685 0.78965 0.79589 1.18193 1.15405 1.22355 1.21156 0.93992 0.98057 0.96477 1.21467 1.01165 0.91868 1.08464 0.92058 0.86330 0.91531 0.84291 0.83762 0.88644 0.88573 0.92248 0.92294 0.92961 0.93071 0.89500 0.92054 0.84079 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.31 10.50 -92.48 -0.97 -7.28 16 3 C 0.11 2.25 6.69 22.51 0.15 2.40 16 4 C -0.16 -3.29 9.99 22.36 0.22 -3.07 16 5 C -0.08 -1.51 9.69 22.25 0.22 -1.30 16 6 C -0.13 -2.62 5.13 -19.85 -0.10 -2.72 16 7 C -0.06 -1.24 5.72 29.85 0.17 -1.06 16 8 C 0.06 1.87 5.45 71.98 0.39 2.26 16 9 O -0.35 -12.57 10.12 -51.39 -0.52 -13.10 16 10 C 0.48 21.64 7.25 71.24 0.52 22.16 16 11 O -0.54 -28.85 15.21 21.95 0.33 -28.52 16 12 C 0.02 0.85 2.33 -12.28 -0.03 0.83 16 13 H 0.08 3.50 7.20 -2.38 -0.02 3.48 16 14 C -0.14 -5.46 8.61 71.98 0.62 -4.84 16 15 C -0.53 -31.59 8.96 25.60 0.23 -31.36 16 16 H 0.03 2.43 7.00 -2.91 -0.02 2.41 16 17 C 0.01 0.80 5.45 84.66 0.46 1.26 16 18 N -0.95 -59.76 13.96 21.45 0.30 -59.47 16 19 Si 0.96 42.31 24.37 68.60 1.67 43.98 16 20 H -0.26 -10.54 6.87 99.48 0.68 -9.86 16 21 H -0.23 -8.96 6.53 99.48 0.65 -8.31 16 22 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 23 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 24 C -0.21 -3.78 9.04 22.37 0.20 -3.58 16 25 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 26 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.06 1.81 8.13 -2.38 -0.02 1.79 16 34 H 0.05 2.04 3.28 -2.39 -0.01 2.03 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 38 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.15 1.91 6.30 -2.91 -0.02 1.89 16 Total: -1.00 -75.11 326.89 6.16 -68.95 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.96 Total: 14.42 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.38 Total: -18.99 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -1.16 Total: -48.90 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.67 Total: 43.98 kcal Total: -75.11 6.16 -68.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.755 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds