Wall clock time and date at job start Mon Mar 30 2020 23:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35905 * 116.99821 * 2 1 4 4 C 1.38736 * 120.05325 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.93896 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05920 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.94646 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47178 * 89.99776 * 7 6 5 9 9 O 1.45201 * 109.47351 * 180.02562 * 8 7 6 10 10 C 1.34228 * 116.99993 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99651 * 179.97438 * 10 9 8 13 13 H 1.09004 * 109.47220 * 299.99699 * 12 10 9 14 14 C 1.53000 * 109.47112 * 60.00053 * 12 10 9 15 15 C 1.50703 * 109.46927 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00152 * 354.34994 * 15 12 10 17 17 C 1.37879 * 119.99898 * 174.35793 * 15 12 10 18 18 N 1.31507 * 119.99939 * 156.51722 * 17 15 12 19 19 Si 1.86800 * 119.99920 * 336.79832 * 17 15 12 20 20 H 1.48500 * 109.47295 * 179.72490 * 19 17 15 21 21 H 1.48504 * 109.47219 * 299.72276 * 19 17 15 22 22 H 1.48507 * 109.47298 * 59.72421 * 19 17 15 23 23 C 1.38267 * 120.11077 * 0.24988 * 6 5 4 24 24 C 1.38139 * 120.05361 * 359.45414 * 23 6 5 25 25 H 1.09000 * 109.47011 * 299.99794 * 1 2 3 26 26 H 1.08998 * 109.47700 * 60.00200 * 1 2 3 27 27 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.02902 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96807 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.46777 * 329.99851 * 7 6 5 31 31 H 1.08997 * 109.47111 * 210.00391 * 7 6 5 32 32 H 1.08999 * 109.47365 * 59.99989 * 8 7 6 33 33 H 1.09003 * 109.46967 * 300.00053 * 8 7 6 34 34 H 1.08999 * 109.47261 * 173.11949 * 14 12 10 35 35 H 1.09007 * 109.46646 * 293.11218 * 14 12 10 36 36 H 1.08994 * 109.47507 * 53.11024 * 14 12 10 37 37 H 0.96999 * 120.00644 * 355.21451 * 18 17 15 38 38 H 1.07999 * 119.96898 * 179.70822 * 23 6 5 39 39 H 1.08005 * 120.03061 * 180.25336 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0559 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2168 5.4747 -1.4393 9 8 4.8765 6.7682 -1.4382 10 6 5.1522 7.3126 -2.6337 11 8 4.8527 6.7275 -3.6475 12 6 5.8353 8.6537 -2.7114 13 1 5.2196 9.4043 -2.2159 14 6 7.1973 8.5731 -2.0189 15 6 6.0276 9.0365 -4.1562 16 1 5.7731 8.3370 -4.9387 17 6 6.5287 10.2797 -4.4791 18 7 7.1242 10.4683 -5.6364 19 14 6.3686 11.6942 -3.2696 20 1 6.9889 12.9131 -3.8483 21 1 4.9318 11.9520 -2.9967 22 1 7.0578 11.3422 -2.0021 23 6 1.9209 3.6048 0.0079 24 6 1.2915 2.3751 0.0012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0208 0.3800 -0.0005 29 1 5.1344 2.5751 0.0000 30 1 4.9441 4.9378 0.5161 31 1 3.3581 5.7458 0.5177 32 1 3.2587 5.5555 -1.9526 33 1 4.8447 4.7474 -1.9541 34 1 7.7424 9.5031 -2.1800 35 1 7.0526 8.4174 -0.9498 36 1 7.7670 7.7415 -2.4334 37 1 7.2730 9.7184 -6.2333 38 1 1.3341 4.5114 0.0139 39 1 0.2128 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330230198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:27 Heat of formation + Delta-G solvation = -114.361328 kcal Electronic energy + Delta-G solvation = -20570.041388 eV Core-core repulsion = 17249.745305 eV Total energy + Delta-G solvation = -3320.296083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42547 -39.65080 -38.03345 -35.93827 -33.91863 -33.01629 -31.33645 -31.18262 -28.85220 -27.32909 -24.89246 -24.08808 -22.91190 -22.42526 -21.00580 -19.62697 -18.43313 -17.45306 -16.71706 -16.60545 -16.05399 -15.89276 -15.50138 -15.41152 -14.53223 -14.20195 -13.87866 -13.77577 -13.41450 -13.27108 -12.79949 -12.71559 -12.34176 -11.97468 -11.84728 -11.77407 -11.56149 -11.33987 -11.14836 -11.06885 -10.97123 -10.53650 -10.26683 -10.05124 -9.86986 -9.27017 -9.23911 -9.00236 -8.34366 -8.22350 -6.54588 -4.11133 1.10047 1.14471 2.96287 3.19283 3.29699 3.36742 3.41700 3.57568 3.63125 4.46695 4.49679 4.60601 4.74410 4.78253 4.78908 4.98929 5.08873 5.12910 5.15964 5.18897 5.26496 5.40208 5.51878 5.71460 5.76673 5.88041 6.04102 6.06323 6.12986 6.22815 6.44151 6.45649 6.50977 6.53302 6.86964 7.09601 7.11671 7.24175 7.83535 8.40038 8.76789 8.95043 9.54924 10.85701 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042879 B = 0.002805 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.841270 B = 9980.024723 C =10060.443923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.074 4.074 8 C 0.068 3.932 9 O -0.369 6.369 10 C 0.471 3.529 11 O -0.508 6.508 12 C 0.034 3.966 13 H 0.055 0.945 14 C -0.140 4.140 15 C -0.607 4.607 16 H 0.076 0.924 17 C 0.041 3.959 18 N -0.891 5.891 19 Si 1.033 2.967 20 H -0.282 1.282 21 H -0.281 1.281 22 H -0.274 1.274 23 C -0.073 4.073 24 C -0.207 4.207 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.272 0.728 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 -16.867 15.818 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.006 4.006 9 O -0.288 6.288 10 C 0.314 3.686 11 O -0.394 6.394 12 C 0.014 3.986 13 H 0.072 0.928 14 C -0.198 4.198 15 C -0.645 4.645 16 H 0.094 0.906 17 C -0.166 4.166 18 N -0.524 5.524 19 Si 0.860 3.140 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.091 4.091 24 C -0.225 4.225 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.569 -15.651 15.670 24.540 hybrid contribution -0.750 -1.727 -0.390 1.923 sum -11.319 -17.377 15.280 25.760 Atomic orbital electron populations 1.23054 0.78400 1.03907 1.01432 1.86062 1.21400 1.27041 1.88798 1.19060 0.92425 0.84119 0.96740 1.20427 0.91351 0.98678 1.06404 1.20940 1.00107 0.90914 0.97109 1.19640 0.93555 0.94737 1.03693 1.20439 1.01557 0.93166 0.96000 1.22820 0.97450 0.83687 0.96647 1.86566 1.71905 1.34470 1.35854 1.24764 0.75293 0.88572 0.79929 1.90526 1.49628 1.62677 1.36550 1.19033 0.92881 0.86268 1.00413 0.92778 1.22074 0.97895 1.02278 0.97511 1.21908 1.49071 1.03961 0.89510 0.90566 1.25711 0.92000 0.99547 0.99352 1.70828 1.34576 1.35935 1.11028 0.84209 0.77232 0.76684 0.75895 1.20758 1.20753 1.19975 1.20904 0.93964 0.97238 0.96953 1.21219 1.00030 0.92295 1.08974 0.92647 0.92574 0.88268 0.85120 0.85015 0.89841 0.89925 0.91796 0.91747 0.91773 0.94389 0.93488 0.91800 0.85483 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.20 10.50 -19.44 -0.20 -3.40 16 3 C 0.12 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 5 C -0.07 -0.76 9.69 -39.61 -0.38 -1.15 16 6 C -0.12 -1.29 5.14 -104.60 -0.54 -1.82 16 7 C -0.07 -0.87 5.72 -27.88 -0.16 -1.03 16 8 C 0.07 1.07 5.45 37.15 0.20 1.27 16 9 O -0.37 -7.09 10.15 -39.25 -0.40 -7.48 16 10 C 0.47 10.99 7.24 36.01 0.26 11.26 16 11 O -0.51 -13.34 15.22 -18.75 -0.29 -13.62 16 12 C 0.03 0.82 2.34 -92.92 -0.22 0.60 16 13 H 0.05 1.26 6.71 -51.93 -0.35 0.91 16 14 C -0.14 -3.01 8.85 37.16 0.33 -2.69 16 15 C -0.61 -17.51 8.57 -34.44 -0.30 -17.80 16 16 H 0.08 2.47 7.02 -52.49 -0.37 2.10 16 17 C 0.04 1.16 5.19 -17.82 -0.09 1.07 16 18 N -0.89 -27.19 13.70 55.43 0.76 -26.44 16 19 Si 1.03 24.19 26.45 -169.99 -4.50 19.70 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -5.81 6.15 56.52 0.35 -5.46 16 23 C -0.07 -0.75 9.69 -39.61 -0.38 -1.14 16 24 C -0.21 -2.04 9.04 -39.44 -0.36 -2.40 16 25 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.06 1.40 5.48 -51.93 -0.28 1.12 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 37 H 0.27 8.35 8.73 -40.82 -0.36 7.99 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -33.20 330.38 -6.50 -39.70 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.55 Total: 0.16 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.30 Total: -13.60 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.76 Total: -26.44 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.89 Total: -24.51 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.50 Total: 19.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.20 -6.50 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.662 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds