Wall clock time and date at job start Mon Mar 30 2020 23:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35905 * 116.99821 * 2 1 4 4 C 1.38736 * 120.05325 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.93896 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05920 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.94646 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47178 * 89.99776 * 7 6 5 9 9 O 1.45201 * 109.47351 * 180.02562 * 8 7 6 10 10 C 1.34228 * 116.99993 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99651 * 179.97438 * 10 9 8 13 13 H 1.09004 * 109.47220 * 299.99699 * 12 10 9 14 14 C 1.53000 * 109.47112 * 60.00053 * 12 10 9 15 15 C 1.50703 * 109.46927 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00152 * 354.34994 * 15 12 10 17 17 C 1.37879 * 119.99898 * 174.35793 * 15 12 10 18 18 N 1.31507 * 119.99939 * 156.51722 * 17 15 12 19 19 Si 1.86800 * 119.99920 * 336.79832 * 17 15 12 20 20 H 1.48500 * 109.47295 * 179.72490 * 19 17 15 21 21 H 1.48504 * 109.47219 * 299.72276 * 19 17 15 22 22 H 1.48507 * 109.47298 * 59.72421 * 19 17 15 23 23 C 1.38267 * 120.11077 * 0.24988 * 6 5 4 24 24 C 1.38139 * 120.05361 * 359.45414 * 23 6 5 25 25 H 1.09000 * 109.47011 * 299.99794 * 1 2 3 26 26 H 1.08998 * 109.47700 * 60.00200 * 1 2 3 27 27 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.02902 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96807 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.46777 * 329.99851 * 7 6 5 31 31 H 1.08997 * 109.47111 * 210.00391 * 7 6 5 32 32 H 1.08999 * 109.47365 * 59.99989 * 8 7 6 33 33 H 1.09003 * 109.46967 * 300.00053 * 8 7 6 34 34 H 1.08999 * 109.47261 * 173.11949 * 14 12 10 35 35 H 1.09007 * 109.46646 * 293.11218 * 14 12 10 36 36 H 1.08994 * 109.47507 * 53.11024 * 14 12 10 37 37 H 0.96999 * 120.00644 * 355.21451 * 18 17 15 38 38 H 1.07999 * 119.96898 * 179.70822 * 23 6 5 39 39 H 1.08005 * 120.03061 * 180.25336 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0559 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2168 5.4747 -1.4393 9 8 4.8765 6.7682 -1.4382 10 6 5.1522 7.3126 -2.6337 11 8 4.8527 6.7275 -3.6475 12 6 5.8353 8.6537 -2.7114 13 1 5.2196 9.4043 -2.2159 14 6 7.1973 8.5731 -2.0189 15 6 6.0276 9.0365 -4.1562 16 1 5.7731 8.3370 -4.9387 17 6 6.5287 10.2797 -4.4791 18 7 7.1242 10.4683 -5.6364 19 14 6.3686 11.6942 -3.2696 20 1 6.9889 12.9131 -3.8483 21 1 4.9318 11.9520 -2.9967 22 1 7.0578 11.3422 -2.0021 23 6 1.9209 3.6048 0.0079 24 6 1.2915 2.3751 0.0012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0208 0.3800 -0.0005 29 1 5.1344 2.5751 0.0000 30 1 4.9441 4.9378 0.5161 31 1 3.3581 5.7458 0.5177 32 1 3.2587 5.5555 -1.9526 33 1 4.8447 4.7474 -1.9541 34 1 7.7424 9.5031 -2.1800 35 1 7.0526 8.4174 -0.9498 36 1 7.7670 7.7415 -2.4334 37 1 7.2730 9.7184 -6.2333 38 1 1.3341 4.5114 0.0139 39 1 0.2128 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330230198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:27 Heat of formation + Delta-G solvation = -134.430098 kcal Electronic energy + Delta-G solvation = -20570.911635 eV Core-core repulsion = 17249.745305 eV Total energy + Delta-G solvation = -3321.166330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46914 -41.08215 -38.84346 -37.57440 -35.95556 -34.07738 -33.18774 -32.07882 -29.72060 -28.03076 -26.87391 -25.51205 -23.98128 -23.59520 -21.89561 -21.43614 -19.56034 -19.13415 -18.44774 -17.71630 -17.31486 -17.01481 -16.66845 -16.27302 -15.60804 -15.37810 -15.24164 -14.92451 -14.65226 -14.53609 -14.32627 -13.92840 -13.72097 -13.29200 -13.16106 -12.90438 -12.85751 -12.64547 -12.49014 -12.36990 -12.06409 -11.87059 -11.79141 -11.65288 -11.47174 -11.12836 -11.09909 -10.41532 -10.00852 -9.13350 -8.84000 -6.41398 0.31953 0.34650 1.34994 1.52629 1.59989 1.76358 1.85375 2.34904 2.53080 2.72929 2.98935 3.75595 3.80746 3.90788 3.97907 4.03589 4.18240 4.25765 4.36396 4.38001 4.40318 4.41886 4.46505 4.62247 4.64941 4.71505 4.82837 4.84062 4.97925 5.06769 5.11642 5.25779 5.33333 5.39945 5.50225 5.62761 5.76426 5.79010 6.02863 6.40180 6.54699 6.97256 7.35349 8.55272 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042879 B = 0.002805 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.841270 B = 9980.024723 C =10060.443923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.131 4.131 7 C -0.060 4.060 8 C 0.064 3.936 9 O -0.355 6.355 10 C 0.475 3.525 11 O -0.549 6.549 12 C 0.025 3.975 13 H 0.079 0.921 14 C -0.133 4.133 15 C -0.620 4.620 16 H 0.021 0.979 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 1.078 2.922 20 H -0.287 1.287 21 H -0.262 1.262 22 H -0.229 1.229 23 C -0.079 4.079 24 C -0.211 4.211 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.253 0.747 38 H 0.141 0.859 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 -16.590 19.083 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.183 4.183 5 C -0.096 4.096 6 C -0.131 4.131 7 C -0.097 4.097 8 C -0.010 4.010 9 O -0.272 6.272 10 C 0.320 3.680 11 O -0.439 6.439 12 C 0.005 3.995 13 H 0.096 0.904 14 C -0.191 4.191 15 C -0.657 4.657 16 H 0.039 0.961 17 C -0.208 4.208 18 N -0.556 5.556 19 Si 0.896 3.104 20 H -0.213 1.213 21 H -0.186 1.186 22 H -0.152 1.152 23 C -0.097 4.097 24 C -0.229 4.229 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.159 0.841 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.428 -15.417 18.971 26.985 hybrid contribution -0.589 -2.005 -1.449 2.544 sum -12.017 -17.423 17.522 27.477 Atomic orbital electron populations 1.23338 0.76502 1.05581 1.02216 1.86043 1.23453 1.26870 1.88664 1.19289 0.92774 0.84748 0.96510 1.20651 0.91806 0.99155 1.06711 1.21140 1.00871 0.90849 0.96726 1.19660 0.93996 0.94457 1.05001 1.20365 1.02657 0.93689 0.93018 1.23160 0.96543 0.81643 0.99639 1.86511 1.71588 1.35997 1.33123 1.24561 0.74619 0.88377 0.80421 1.90519 1.51388 1.63762 1.38227 1.19031 0.95187 0.87494 0.97781 0.90387 1.21972 0.95559 1.01892 0.99638 1.21943 1.49187 1.03383 0.91189 0.96083 1.27385 0.90552 1.02614 1.00219 1.70974 1.37223 1.35107 1.12306 0.83699 0.78844 0.72677 0.75194 1.21260 1.18636 1.15206 1.21156 0.93970 0.98082 0.96485 1.21468 1.01184 0.91843 1.08436 0.91507 0.92063 0.86305 0.84263 0.83813 0.88618 0.88559 0.92355 0.92509 0.91888 0.90198 0.94520 0.93865 0.84087 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.32 10.50 -92.48 -0.97 -7.29 16 3 C 0.11 2.27 6.69 22.51 0.15 2.42 16 4 C -0.16 -3.32 9.99 22.37 0.22 -3.10 16 5 C -0.08 -1.54 9.69 22.25 0.22 -1.33 16 6 C -0.13 -2.68 5.14 -19.85 -0.10 -2.78 16 7 C -0.06 -1.26 5.72 29.85 0.17 -1.09 16 8 C 0.06 1.92 5.45 71.98 0.39 2.31 16 9 O -0.36 -12.91 10.15 -51.39 -0.52 -13.43 16 10 C 0.47 21.95 7.24 71.24 0.52 22.46 16 11 O -0.55 -29.65 15.22 21.97 0.33 -29.32 16 12 C 0.02 1.16 2.34 -12.28 -0.03 1.14 16 13 H 0.08 3.35 6.71 -2.39 -0.02 3.33 16 14 C -0.13 -5.36 8.85 71.98 0.64 -4.72 16 15 C -0.62 -36.51 8.57 25.60 0.22 -36.30 16 16 H 0.02 1.43 7.02 -2.91 -0.02 1.41 16 17 C -0.01 -0.48 5.19 84.66 0.44 -0.04 16 18 N -0.92 -58.01 13.70 21.45 0.29 -57.71 16 19 Si 1.08 46.81 26.45 68.60 1.81 48.63 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.23 -8.31 6.15 99.48 0.61 -7.70 16 23 C -0.08 -1.50 9.69 22.25 0.22 -1.28 16 24 C -0.21 -3.80 9.04 22.36 0.20 -3.60 16 25 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 26 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 27 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.10 1.78 8.08 -2.38 -0.02 1.76 16 31 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 33 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.06 2.54 5.48 -2.39 -0.01 2.53 16 35 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 37 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 Total: -1.00 -74.85 330.38 6.22 -68.63 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.91 Total: 15.10 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.36 Total: -24.60 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.29 Total: -57.71 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -1.16 Total: -50.04 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.81 Total: 48.63 kcal Total: -74.85 6.22 -68.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.797 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds