Wall clock time and date at job start Tue Mar 31 2020 00:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47052 * 300.00334 * 3 2 1 6 6 H 1.48504 * 109.47010 * 59.99957 * 3 2 1 7 7 C 1.40022 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78504 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.14723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68224 * 0.02562 * 11 10 9 13 13 C 1.39765 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.38820 * 119.58823 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99837 * 359.72471 * 14 13 12 16 16 C 1.53004 * 109.47198 * 180.27740 * 15 14 13 17 17 H 1.08998 * 109.46700 * 305.00136 * 16 15 14 18 18 O 1.42903 * 109.46927 * 64.99809 * 16 15 14 19 19 C 1.52998 * 109.47023 * 185.00121 * 16 15 14 20 20 H 1.08996 * 109.87660 * 63.99344 * 19 16 15 21 21 C 1.54105 * 109.87551 * 184.99915 * 19 16 15 22 22 C 1.54814 * 104.18815 * 121.45480 * 21 19 16 23 23 C 1.55000 * 102.09229 * 20.87962 * 22 21 19 24 24 O 1.43752 * 109.87924 * 302.82810 * 19 16 15 25 25 N 1.31978 * 120.82640 * 0.26236 * 13 12 11 26 26 H 0.97000 * 120.00631 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.42661 * 0.02562 * 10 9 7 28 28 H 1.08000 * 120.66077 * 180.02562 * 11 10 9 29 29 H 1.08003 * 120.25842 * 180.02562 * 12 11 10 30 30 H 0.97001 * 120.00313 * 180.02562 * 14 13 12 31 31 H 1.09009 * 109.47454 * 300.27509 * 15 14 13 32 32 H 1.08998 * 109.47492 * 60.27804 * 15 14 13 33 33 H 0.96706 * 113.99936 * 60.00707 * 18 16 15 34 34 H 1.08992 * 110.48582 * 240.12569 * 21 19 16 35 35 H 1.08997 * 110.48904 * 2.64975 * 21 19 16 36 36 H 1.08995 * 110.90783 * 139.07919 * 22 21 19 37 37 H 1.09000 * 110.90553 * 262.64852 * 22 21 19 38 38 H 1.08996 * 110.61735 * 81.47863 * 23 22 21 39 39 H 1.09004 * 110.61475 * 204.32271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3010 -2.4365 -0.0016 10 6 2.0086 -3.6514 -0.0016 11 6 1.3036 -4.8417 -0.0033 12 6 -0.0819 -4.7945 -0.0054 13 6 -0.7282 -3.5552 -0.0053 14 7 -2.1155 -3.5056 -0.0079 15 6 -2.8928 -4.7473 -0.0169 16 6 -4.3861 -4.4142 -0.0251 17 1 -4.6175 -3.7626 0.8174 18 8 -4.7194 -3.7507 -1.2461 19 6 -5.1974 -5.7061 0.0913 20 1 -5.0012 -6.1817 1.0522 21 6 -6.7008 -5.3945 -0.0418 22 6 -7.1581 -6.2416 -1.2542 23 6 -6.0494 -7.3220 -1.3321 24 8 -4.8499 -6.5998 -0.9797 25 7 -0.0360 -2.4315 -0.0084 26 1 -0.4851 0.8400 -0.0004 27 1 3.0885 -3.6553 -0.0004 28 1 1.8223 -5.7890 -0.0029 29 1 -0.6576 -5.7083 -0.0063 30 1 -2.5702 -2.6488 -0.0083 31 1 -2.6445 -5.3251 -0.9074 32 1 -2.6556 -5.3310 0.8726 33 1 -4.5393 -4.2733 -2.0396 34 1 -7.2344 -5.6982 0.8587 35 1 -6.8546 -4.3330 -0.2358 36 1 -8.1311 -6.6955 -1.0667 37 1 -7.1801 -5.6400 -2.1629 38 1 -6.2410 -8.1208 -0.6157 39 1 -5.9754 -7.7238 -2.3427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331311983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:21 Heat of formation + Delta-G solvation = -60.719250 kcal Electronic energy + Delta-G solvation = -21416.143464 eV Core-core repulsion = 18130.466227 eV Total energy + Delta-G solvation = -3285.677237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01687 -38.19187 -36.83188 -34.48307 -33.11093 -32.29147 -30.96003 -30.21548 -28.94146 -26.58077 -25.26013 -23.41323 -21.85563 -21.48010 -20.96197 -20.21222 -17.38701 -16.93796 -16.80015 -16.35163 -16.01274 -15.17222 -14.62379 -14.56318 -14.43911 -13.97384 -13.86219 -13.50939 -13.12043 -12.90350 -12.67520 -12.00316 -11.83637 -11.81675 -11.64589 -11.52099 -11.25834 -11.13289 -10.91805 -10.85954 -10.58101 -10.36495 -10.13666 -9.84972 -9.63256 -9.43742 -8.81415 -7.83715 -7.43084 -6.42238 -6.25544 -4.40698 2.92398 3.15770 3.20340 3.30900 3.35943 3.60600 4.01537 4.04220 4.29793 4.57726 4.61907 4.68650 4.90467 4.91680 5.00507 5.18411 5.21313 5.38611 5.45396 5.55286 5.57038 5.75275 5.91408 5.99241 6.12054 6.22388 6.28509 6.65217 6.66132 6.93796 6.96037 7.01574 7.32134 7.65973 7.70199 7.88921 7.99202 8.24868 8.44465 8.78386 8.87764 9.20183 10.32293 10.47947 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.003795 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.372192 B = 7376.434367 C = 8187.842971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.318 4.318 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.412 3.588 14 N -0.734 5.734 15 C 0.116 3.884 16 C 0.102 3.898 17 H 0.112 0.888 18 O -0.551 6.551 19 C 0.047 3.953 20 H 0.077 0.923 21 C -0.149 4.149 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.369 6.369 25 N -0.531 5.531 26 H 0.269 0.731 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -9.550 -0.669 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.341 4.341 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.371 5.371 15 C -0.010 4.010 16 C 0.042 3.958 17 H 0.130 0.870 18 O -0.356 6.356 19 C -0.012 4.012 20 H 0.095 0.905 21 C -0.186 4.186 22 C -0.191 4.191 23 C -0.031 4.031 24 O -0.288 6.288 25 N -0.253 5.253 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.715 -8.366 -0.353 16.931 hybrid contribution 0.597 -0.410 -0.182 0.747 sum -14.118 -8.776 -0.535 16.632 Atomic orbital electron populations 1.70167 1.07106 1.27172 1.29245 1.26050 0.94842 1.00871 0.93628 0.86334 0.80888 0.81521 0.78386 1.18490 1.19975 1.20000 1.19605 0.94133 0.89392 1.43641 0.89910 1.18217 0.86936 0.91842 0.86500 1.21527 0.98362 0.93498 1.20678 1.20586 0.93446 0.96331 0.95305 1.20619 0.94612 0.95516 1.28621 1.18529 0.84321 0.90236 0.89748 1.44031 1.02629 1.06676 1.83804 1.21627 0.89676 0.88155 1.01548 1.22317 0.92809 0.91820 0.88817 0.87040 1.86526 1.87499 1.46023 1.15568 1.23494 0.94700 0.91236 0.91744 0.90548 1.22908 0.94640 1.02504 0.98572 1.23117 0.99134 0.97626 0.99248 1.23559 0.84152 0.94415 1.01003 1.88912 1.31973 1.54656 1.53277 1.68221 1.07635 1.24341 1.25085 0.92027 0.88771 0.89024 0.89267 0.76686 0.92087 0.92613 0.77345 0.90879 0.89227 0.90477 0.90280 0.92295 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.60 11.46 55.55 0.64 -18.96 16 2 C 0.07 1.87 5.50 -17.35 -0.10 1.78 16 3 Si 0.90 19.21 29.56 -169.99 -5.02 14.18 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.44 -12.15 9.14 -37.74 -0.34 -12.50 16 8 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 9 C 0.29 8.42 6.55 -84.99 -0.56 7.86 16 10 C -0.32 -8.33 9.83 -38.66 -0.38 -8.71 16 11 C -0.03 -0.78 10.15 -39.40 -0.40 -1.18 16 12 C -0.37 -8.89 9.34 -38.86 -0.36 -9.26 16 13 C 0.41 10.51 7.65 -155.32 -1.19 9.32 16 14 N -0.73 -15.45 5.67 -60.39 -0.34 -15.80 16 15 C 0.12 1.90 4.27 -4.04 -0.02 1.89 16 16 C 0.10 1.32 2.80 -26.73 -0.07 1.24 16 17 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 18 O -0.55 -7.59 12.41 -41.06 -0.51 -8.09 16 19 C 0.05 0.50 3.31 -26.16 -0.09 0.41 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.15 -1.28 6.38 -25.20 -0.16 -1.44 16 22 C -0.15 -1.16 7.15 -24.72 -0.18 -1.33 16 23 C 0.05 0.38 7.72 38.21 0.29 0.67 16 24 O -0.37 -4.29 10.13 -41.06 -0.42 -4.70 16 25 N -0.53 -15.23 7.89 -10.33 -0.08 -15.31 16 26 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 27 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.09 1.95 6.68 -52.48 -0.35 1.60 16 30 H 0.40 8.56 8.59 -40.82 -0.35 8.21 16 31 H 0.06 1.05 7.57 -51.92 -0.39 0.66 16 32 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.38 4.64 8.68 45.56 0.40 5.04 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.86 7.22 -51.93 -0.38 0.48 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -31.70 324.14 -9.24 -40.93 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -4.84 Total: 14.12 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.55 Total: -11.25 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.21 Total: -50.07 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.93 Total: -12.80 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.70 -9.24 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331311983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.785 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds