Wall clock time and date at job start Tue Mar 31 2020 00:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47052 * 300.00334 * 3 2 1 6 6 H 1.48504 * 109.47010 * 59.99957 * 3 2 1 7 7 C 1.40022 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.40590 * 119.78504 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.14723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68224 * 0.02562 * 11 10 9 13 13 C 1.39765 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.38820 * 119.58823 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99837 * 359.72471 * 14 13 12 16 16 C 1.53004 * 109.47198 * 180.27740 * 15 14 13 17 17 H 1.08998 * 109.46700 * 305.00136 * 16 15 14 18 18 O 1.42903 * 109.46927 * 64.99809 * 16 15 14 19 19 C 1.52998 * 109.47023 * 185.00121 * 16 15 14 20 20 H 1.08996 * 109.87660 * 63.99344 * 19 16 15 21 21 C 1.54105 * 109.87551 * 184.99915 * 19 16 15 22 22 C 1.54814 * 104.18815 * 121.45480 * 21 19 16 23 23 C 1.55000 * 102.09229 * 20.87962 * 22 21 19 24 24 O 1.43752 * 109.87924 * 302.82810 * 19 16 15 25 25 N 1.31978 * 120.82640 * 0.26236 * 13 12 11 26 26 H 0.97000 * 120.00631 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.42661 * 0.02562 * 10 9 7 28 28 H 1.08000 * 120.66077 * 180.02562 * 11 10 9 29 29 H 1.08003 * 120.25842 * 180.02562 * 12 11 10 30 30 H 0.97001 * 120.00313 * 180.02562 * 14 13 12 31 31 H 1.09009 * 109.47454 * 300.27509 * 15 14 13 32 32 H 1.08998 * 109.47492 * 60.27804 * 15 14 13 33 33 H 0.96706 * 113.99936 * 60.00707 * 18 16 15 34 34 H 1.08992 * 110.48582 * 240.12569 * 21 19 16 35 35 H 1.08997 * 110.48904 * 2.64975 * 21 19 16 36 36 H 1.08995 * 110.90783 * 139.07919 * 22 21 19 37 37 H 1.09000 * 110.90553 * 262.64852 * 22 21 19 38 38 H 1.08996 * 110.61735 * 81.47863 * 23 22 21 39 39 H 1.09004 * 110.61475 * 204.32271 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3010 -2.4365 -0.0016 10 6 2.0086 -3.6514 -0.0016 11 6 1.3036 -4.8417 -0.0033 12 6 -0.0819 -4.7945 -0.0054 13 6 -0.7282 -3.5552 -0.0053 14 7 -2.1155 -3.5056 -0.0079 15 6 -2.8928 -4.7473 -0.0169 16 6 -4.3861 -4.4142 -0.0251 17 1 -4.6175 -3.7626 0.8174 18 8 -4.7194 -3.7507 -1.2461 19 6 -5.1974 -5.7061 0.0913 20 1 -5.0012 -6.1817 1.0522 21 6 -6.7008 -5.3945 -0.0418 22 6 -7.1581 -6.2416 -1.2542 23 6 -6.0494 -7.3220 -1.3321 24 8 -4.8499 -6.5998 -0.9797 25 7 -0.0360 -2.4315 -0.0084 26 1 -0.4851 0.8400 -0.0004 27 1 3.0885 -3.6553 -0.0004 28 1 1.8223 -5.7890 -0.0029 29 1 -0.6576 -5.7083 -0.0063 30 1 -2.5702 -2.6488 -0.0083 31 1 -2.6445 -5.3251 -0.9074 32 1 -2.6556 -5.3310 0.8726 33 1 -4.5393 -4.2733 -2.0396 34 1 -7.2344 -5.6982 0.8587 35 1 -6.8546 -4.3330 -0.2358 36 1 -8.1311 -6.6955 -1.0667 37 1 -7.1801 -5.6400 -2.1629 38 1 -6.2410 -8.1208 -0.6157 39 1 -5.9754 -7.7238 -2.3427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331311983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:20 Heat of formation + Delta-G solvation = -83.060558 kcal Electronic energy + Delta-G solvation = -21417.112255 eV Core-core repulsion = 18130.466227 eV Total energy + Delta-G solvation = -3286.646029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89687 -40.04617 -38.00624 -36.15449 -34.97412 -33.00874 -32.45074 -31.88250 -30.54118 -27.87533 -27.19527 -24.49130 -23.39382 -22.64037 -22.11088 -21.85292 -19.27801 -18.21518 -17.97276 -17.47283 -16.98343 -16.63903 -16.43996 -15.97868 -15.76718 -15.50052 -14.90415 -14.71323 -14.52267 -14.47383 -14.22362 -13.62813 -13.45754 -12.84611 -12.73897 -12.65404 -12.58708 -12.53576 -12.37575 -12.16849 -12.00255 -11.71132 -11.56188 -11.31083 -11.12307 -10.67921 -10.53853 -9.84046 -9.44277 -8.29367 -8.22056 -6.48019 1.05662 1.34186 1.41934 1.57625 1.57879 2.25838 2.57313 2.86401 2.93006 3.40254 3.62949 3.73306 4.00041 4.02118 4.05430 4.19728 4.20206 4.37785 4.40920 4.54455 4.64513 4.78479 4.80951 4.84437 4.97833 4.99673 5.00223 5.07865 5.11682 5.14800 5.24869 5.37196 5.71480 5.92362 5.96209 6.06575 6.23265 6.54828 6.67296 6.84010 6.95320 7.22226 8.34906 8.52225 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.003795 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.372192 B = 7376.434367 C = 8187.842971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.024 3.976 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.343 4.343 11 C -0.030 4.030 12 C -0.369 4.369 13 C 0.393 3.607 14 N -0.729 5.729 15 C 0.118 3.882 16 C 0.110 3.890 17 H 0.115 0.885 18 O -0.561 6.561 19 C 0.051 3.949 20 H 0.086 0.914 21 C -0.145 4.145 22 C -0.148 4.148 23 C 0.039 3.961 24 O -0.394 6.394 25 N -0.565 5.565 26 H 0.276 0.724 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.384 0.616 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 -10.227 -0.516 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.503 4.503 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.366 4.366 11 C -0.054 4.054 12 C -0.395 4.395 13 C 0.152 3.848 14 N -0.364 5.364 15 C -0.007 4.007 16 C 0.050 3.950 17 H 0.133 0.867 18 O -0.368 6.368 19 C -0.007 4.007 20 H 0.104 0.896 21 C -0.183 4.183 22 C -0.186 4.186 23 C -0.036 4.036 24 O -0.314 6.314 25 N -0.288 5.288 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.687 -9.092 -0.205 18.133 hybrid contribution 0.807 -0.336 -0.248 0.909 sum -14.880 -9.427 -0.453 17.621 Atomic orbital electron populations 1.70267 1.08846 1.28631 1.29716 1.26995 0.95740 1.04465 0.92515 0.85081 0.79377 0.76001 0.78696 1.17805 1.19196 1.19105 1.19972 0.94615 0.90463 1.45229 0.89482 1.18719 0.87665 0.93276 0.87287 1.21698 0.99021 0.93729 1.22192 1.20999 0.93621 0.97230 0.93530 1.20932 0.95059 0.95951 1.27573 1.18999 0.86002 0.90311 0.89466 1.44216 1.01368 1.08140 1.82691 1.21830 0.91419 0.86206 1.01272 1.22285 0.90671 0.93373 0.88624 0.86723 1.86512 1.87407 1.46729 1.16124 1.23450 0.95428 0.89845 0.92025 0.89616 1.22893 0.93301 1.02117 0.99975 1.23104 0.99852 0.97123 0.98486 1.23765 0.83293 0.94682 1.01903 1.88885 1.33826 1.55117 1.53573 1.68203 1.08028 1.26041 1.26562 0.91376 0.87832 0.85290 0.86808 0.77256 0.92761 0.92126 0.76745 0.89034 0.90288 0.88372 0.90812 0.91074 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.21 11.46 21.84 0.25 -41.96 16 2 C 0.02 1.30 5.50 85.29 0.47 1.77 16 3 Si 0.99 39.75 29.56 68.60 2.03 41.78 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.47 -26.98 9.14 23.46 0.21 -26.77 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.26 15.29 6.55 40.19 0.26 15.55 16 10 C -0.34 -18.25 9.83 22.87 0.22 -18.02 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.37 -17.62 9.34 22.73 0.21 -17.41 16 13 C 0.39 20.32 7.65 133.40 1.02 21.34 16 14 N -0.73 -30.96 5.67 -344.99 -1.96 -32.92 16 15 C 0.12 3.78 4.27 86.38 0.37 4.15 16 16 C 0.11 2.75 2.80 30.59 0.09 2.83 16 17 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 18 O -0.56 -15.22 12.41 -143.41 -1.78 -17.00 16 19 C 0.05 0.99 3.31 30.97 0.10 1.10 16 20 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.15 -2.19 6.38 31.59 0.20 -1.99 16 22 C -0.15 -1.87 7.15 31.90 0.23 -1.64 16 23 C 0.04 0.57 7.72 72.67 0.56 1.13 16 24 O -0.39 -8.53 10.13 -143.41 -1.45 -9.98 16 25 N -0.57 -33.36 7.89 -186.58 -1.47 -34.84 16 26 H 0.28 13.95 8.29 -92.71 -0.77 13.19 16 27 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 29 H 0.11 4.77 6.68 -2.91 -0.02 4.75 16 30 H 0.39 17.29 8.59 -92.71 -0.80 16.49 16 31 H 0.05 1.84 7.57 -2.38 -0.02 1.82 16 32 H 0.06 1.90 7.92 -2.39 -0.02 1.88 16 33 H 0.38 9.30 8.68 -74.05 -0.64 8.66 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.39 7.22 -2.39 -0.02 1.37 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -69.69 324.14 -0.57 -70.26 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: -0.37 Total: 43.80 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.18 Total: -19.14 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -3.18 Total: -109.72 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -3.23 Total: -26.98 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -69.69 -0.57 -70.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331311983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.803 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds