Wall clock time and date at job start Tue Mar 31 2020 00:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47128 * 300.00880 * 3 2 1 6 6 H 1.48510 * 109.46665 * 60.00283 * 3 2 1 7 7 C 1.40030 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99661 * 179.97438 * 7 2 1 9 9 C 1.41317 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78265 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.14462 * 179.97438 * 10 9 7 12 12 C 1.38641 * 118.68424 * 359.75179 * 11 10 9 13 13 C 1.39758 * 119.48710 * 0.47145 * 12 11 10 14 14 N 1.38821 * 119.58418 * 179.78913 * 13 12 11 15 15 C 1.48728 * 111.01707 * 295.24000 * 14 13 12 16 16 C 1.54383 * 104.51605 * 201.03444 * 15 14 13 17 17 H 1.09002 * 110.32074 * 264.78069 * 16 15 14 18 18 C 1.52997 * 110.32405 * 142.67857 * 16 15 14 19 19 O 1.42898 * 109.47319 * 67.82573 * 18 16 15 20 20 C 1.54259 * 105.15272 * 23.72483 * 16 15 14 21 21 H 1.08993 * 110.32606 * 241.15643 * 20 16 15 22 22 C 1.53000 * 110.31909 * 118.94892 * 20 16 15 23 23 O 1.42906 * 109.46872 * 175.00489 * 22 20 16 24 24 C 1.48567 * 111.00169 * 179.72832 * 14 13 12 25 25 N 1.31988 * 120.83360 * 359.51799 * 13 12 11 26 26 H 0.97002 * 119.99541 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.42768 * 359.97438 * 10 9 7 28 28 H 1.07997 * 120.65977 * 180.02562 * 11 10 9 29 29 H 1.07992 * 120.25850 * 180.26583 * 12 11 10 30 30 H 1.08992 * 110.50743 * 82.24426 * 15 14 13 31 31 H 1.08997 * 110.38598 * 319.75351 * 15 14 13 32 32 H 1.09002 * 109.47153 * 307.82266 * 18 16 15 33 33 H 1.09001 * 109.46832 * 187.82457 * 18 16 15 34 34 H 0.96701 * 113.99881 * 180.02562 * 19 18 16 35 35 H 1.09005 * 109.47503 * 294.99844 * 22 20 16 36 36 H 1.09003 * 109.47322 * 55.00451 * 22 20 16 37 37 H 0.96694 * 113.99941 * 180.02562 * 23 22 20 38 38 H 1.08995 * 110.40725 * 40.26600 * 24 14 13 39 39 H 1.09000 * 110.50878 * 277.86889 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2123 6 1 1.8828 2.3963 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0821 -4.7945 0.0058 13 6 -0.7282 -3.5552 0.0009 14 7 -2.1155 -3.5055 0.0022 15 6 -2.6712 -4.0837 -1.2503 16 6 -4.0918 -3.4884 -1.3543 17 1 -4.8229 -4.1775 -0.9315 18 6 -4.4340 -3.1819 -2.8137 19 8 -4.5551 -4.4056 -3.5418 20 6 -4.0444 -2.1855 -0.5300 21 1 -4.7509 -2.2357 0.2985 22 6 -4.3539 -0.9812 -1.4215 23 8 -4.4199 0.2002 -0.6202 24 6 -2.5980 -2.1004 0.0030 25 7 -0.0360 -2.4314 0.0004 26 1 -0.4849 0.8401 0.0004 27 1 3.0885 -3.6554 -0.0010 28 1 1.8221 -5.7890 0.0004 29 1 -0.6578 -5.7081 0.0107 30 1 -2.7184 -5.1704 -1.1811 31 1 -2.0691 -3.7823 -2.1074 32 1 -3.6424 -2.5747 -3.2527 33 1 -5.3771 -2.6374 -2.8591 34 1 -4.7711 -4.2872 -4.4769 35 1 -3.5675 -0.8702 -2.1682 36 1 -5.3103 -1.1352 -1.9212 37 1 -4.6135 1.0046 -1.1206 38 1 -1.9848 -1.4876 -0.6577 39 1 -2.5888 -1.6940 1.0144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331974931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:55 Heat of formation + Delta-G solvation = -73.698174 kcal Electronic energy + Delta-G solvation = -22427.264020 eV Core-core repulsion = 19141.023975 eV Total energy + Delta-G solvation = -3286.240045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28532 -39.59047 -37.48702 -37.31509 -35.50399 -34.01958 -32.35063 -30.75783 -30.48727 -27.71129 -26.27741 -25.83859 -23.48741 -23.02977 -21.68225 -20.10482 -19.25527 -19.01194 -17.70890 -17.59062 -17.11189 -16.52777 -16.34999 -16.22966 -15.87048 -15.44642 -15.04430 -14.62993 -14.30403 -14.14583 -14.04054 -13.61668 -13.14369 -12.91632 -12.83721 -12.77366 -12.64607 -12.60637 -12.27221 -12.14061 -11.91609 -11.76838 -11.26515 -11.24981 -11.15934 -10.55626 -10.45665 -9.95872 -9.50682 -8.88801 -8.28849 -6.51136 0.84835 1.15306 1.39786 1.51079 1.54533 2.22289 2.77810 3.01002 3.16045 3.36621 3.57352 3.82112 3.94103 4.03635 4.24896 4.31662 4.34916 4.37516 4.48197 4.54130 4.55322 4.62384 4.68416 4.79848 4.90352 4.93997 4.94739 5.07225 5.16184 5.25323 5.28786 5.51214 5.59305 5.81706 5.87876 6.00309 6.24265 6.48126 6.77338 6.91385 6.97815 7.03810 8.14342 8.44548 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.006956 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.232353 B = 4024.315647 C = 5379.669182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.464 4.464 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.315 4.315 11 C -0.043 4.043 12 C -0.321 4.321 13 C 0.292 3.708 14 N -0.473 5.473 15 C 0.065 3.935 16 C -0.076 4.076 17 H 0.101 0.899 18 C 0.085 3.915 19 O -0.588 6.588 20 C -0.086 4.086 21 H 0.088 0.912 22 C 0.087 3.913 23 O -0.589 6.589 24 C 0.073 3.927 25 N -0.529 5.529 26 H 0.277 0.723 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.394 0.606 38 H 0.066 0.934 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 0.158 -7.424 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.338 4.338 11 C -0.068 4.068 12 C -0.346 4.346 13 C 0.054 3.946 14 N -0.192 5.192 15 C -0.061 4.061 16 C -0.095 4.095 17 H 0.119 0.881 18 C 0.007 3.993 19 O -0.396 6.396 20 C -0.105 4.105 21 H 0.106 0.894 22 C 0.010 3.990 23 O -0.397 6.397 24 C -0.055 4.055 25 N -0.247 5.247 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.084 0.916 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.220 0.113 -5.904 12.679 hybrid contribution 1.241 0.726 -1.185 1.864 sum -9.979 0.839 -7.089 12.269 Atomic orbital electron populations 1.70206 1.08447 1.28744 1.28717 1.26933 0.95828 1.04190 0.92748 0.85120 0.79355 0.76261 0.78715 1.18024 1.18955 1.19389 1.19942 0.94618 0.90307 1.44694 0.89519 1.18888 0.88196 0.93430 0.88521 1.21849 0.99328 0.93660 1.18965 1.21110 0.93579 0.97573 0.94504 1.21030 0.94881 0.96341 1.22310 1.20463 0.90260 0.90665 0.93170 1.62682 1.04727 1.17554 1.34207 1.23012 0.94474 1.00154 0.88476 1.21851 0.96102 0.96204 0.95339 0.88088 1.22359 1.00630 0.86188 0.90131 1.86443 1.94276 1.31495 1.27420 1.21943 0.96594 0.93469 0.98544 0.89360 1.22370 1.00360 0.84292 0.91988 1.86500 1.95039 1.18666 1.39513 1.22702 0.93805 0.88204 1.00767 1.68657 1.08048 1.26234 1.21804 0.91223 0.87336 0.84823 0.86754 0.89622 0.95539 0.94041 0.89943 0.75196 0.94359 0.89837 0.75617 0.91562 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.53 10.71 21.84 0.23 -39.30 16 2 C 0.03 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.98 38.53 29.56 68.60 2.03 40.56 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.46 -25.72 9.14 23.46 0.21 -25.50 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.24 13.57 6.55 40.19 0.26 13.84 16 10 C -0.32 -16.28 9.83 22.87 0.22 -16.05 16 11 C -0.04 -2.02 10.15 22.39 0.23 -1.79 16 12 C -0.32 -15.43 9.54 22.73 0.22 -15.21 16 13 C 0.29 15.17 6.16 133.40 0.82 15.99 16 14 N -0.47 -21.22 5.39 -687.36 -3.70 -24.92 16 15 C 0.07 2.41 5.47 86.42 0.47 2.89 16 16 C -0.08 -2.16 3.33 -9.90 -0.03 -2.19 16 17 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 18 C 0.08 1.85 5.17 71.98 0.37 2.22 16 19 O -0.59 -12.64 13.52 -148.98 -2.01 -14.65 16 20 C -0.09 -2.72 3.33 -9.90 -0.03 -2.75 16 21 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 22 C 0.09 2.25 5.19 71.98 0.37 2.63 16 23 O -0.59 -16.51 13.55 -148.98 -2.02 -18.53 16 24 C 0.07 3.18 5.36 86.45 0.46 3.64 16 25 N -0.53 -30.28 5.91 -186.59 -1.10 -31.38 16 26 H 0.28 13.51 8.29 -92.71 -0.77 12.74 16 27 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 28 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.03 1.07 7.61 -2.39 -0.02 1.06 16 32 H 0.04 0.98 7.03 -2.39 -0.02 0.97 16 33 H 0.08 1.28 6.44 -2.39 -0.02 1.27 16 34 H 0.40 4.51 9.12 -74.06 -0.68 3.83 16 35 H 0.04 1.07 7.03 -2.38 -0.02 1.05 16 36 H 0.08 1.48 6.39 -2.39 -0.02 1.46 16 37 H 0.39 6.92 9.12 -74.06 -0.68 6.24 16 38 H 0.07 3.32 5.98 -2.39 -0.01 3.30 16 39 H 0.04 2.04 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.78 316.29 -2.79 -74.57 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.27 Total: 34.16 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.05 Total: -20.51 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.57 Total: -95.60 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -4.03 Total: -33.18 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -71.78 -2.79 -74.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331974931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.873 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds