Wall clock time and date at job start Tue Mar 31 2020 00:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47449 * 270.00486 * 3 2 1 5 5 H 1.48504 * 109.46719 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.46936 * 149.99850 * 3 2 1 7 7 C 1.37872 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99817 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99907 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47203 * 35.00363 * 15 14 12 17 17 C 1.52996 * 109.46990 * 274.99715 * 15 14 12 18 18 O 1.42893 * 109.47326 * 294.99914 * 17 15 14 19 19 C 1.50704 * 109.47073 * 154.99718 * 15 14 12 20 20 C 1.38665 * 120.42281 * 220.02004 * 19 15 14 21 21 C 1.38627 * 118.42233 * 179.97438 * 20 19 15 22 22 C 1.38225 * 119.16163 * 0.02562 * 21 20 19 23 23 N 1.31847 * 120.76447 * 359.97438 * 22 21 20 24 24 C 1.31891 * 121.72615 * 359.97438 * 23 22 21 25 25 H 0.97006 * 119.99953 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46793 * 59.99559 * 9 7 2 27 27 H 1.09003 * 109.46640 * 300.00233 * 9 7 2 28 28 H 1.09002 * 109.46878 * 59.99715 * 10 9 7 29 29 H 1.08995 * 109.47144 * 299.99992 * 10 9 7 30 30 H 1.09002 * 109.47286 * 60.00207 * 11 10 9 31 31 H 1.08995 * 109.47311 * 300.00133 * 11 10 9 32 32 H 0.96993 * 119.99930 * 359.97438 * 14 12 11 33 33 H 1.08998 * 109.47127 * 55.00410 * 17 15 14 34 34 H 1.09005 * 109.47131 * 175.00031 * 17 15 14 35 35 H 0.96698 * 114.00243 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.78753 * 0.02562 * 20 19 15 37 37 H 1.08010 * 120.41700 * 180.02562 * 21 20 19 38 38 H 1.07996 * 119.61355 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.61758 * 180.28019 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4596 -6.1325 -0.0024 13 8 3.6520 -5.9109 -0.0018 14 7 2.0103 -7.4032 -0.0034 15 6 2.9624 -8.5167 -0.0032 16 1 3.8378 -8.2461 0.5871 17 6 3.3904 -8.8219 -1.4400 18 8 2.2632 -9.2885 -2.1840 19 6 2.3096 -9.7356 0.5962 20 6 3.0233 -10.5691 1.4440 21 6 2.3818 -11.6786 1.9724 22 6 1.0617 -11.9159 1.6386 23 7 0.4139 -11.1015 0.8289 24 6 0.9919 -10.0363 0.3086 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5562 -0.8920 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6046 0.8890 29 1 2.8726 -3.6039 -0.8909 30 1 0.8541 -5.0447 -0.8923 31 1 0.8533 -5.0450 0.8876 32 1 1.0567 -7.5804 -0.0035 33 1 3.7815 -7.9158 -1.9028 34 1 4.1643 -9.5895 -1.4333 35 1 2.4615 -9.5022 -3.1060 36 1 4.0542 -10.3583 1.6875 37 1 2.9070 -12.3492 2.6365 38 1 0.5550 -12.7783 2.0457 39 1 0.4278 -9.3897 -0.3472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332166663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:20 Heat of formation + Delta-G solvation = -68.022880 kcal Electronic energy + Delta-G solvation = -20780.822022 eV Core-core repulsion = 17494.828076 eV Total energy + Delta-G solvation = -3285.993946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77179 -39.44043 -37.29006 -35.00665 -34.14779 -32.83367 -32.07531 -31.44137 -29.00058 -27.51863 -24.51038 -23.97821 -23.62816 -21.53196 -20.41882 -19.79024 -17.87428 -17.63794 -16.81008 -16.61290 -16.08380 -15.86474 -15.55338 -15.10335 -14.49394 -14.39724 -14.28400 -13.70836 -13.57320 -13.35270 -13.28839 -12.63998 -12.39318 -12.25127 -11.80426 -11.69760 -11.32474 -10.79679 -10.60209 -10.52724 -10.37503 -10.10139 -9.73588 -9.69753 -9.66628 -9.36343 -9.22975 -9.08124 -8.99451 -8.30764 -5.96363 -3.97830 0.79536 0.98289 2.86675 3.15884 3.35470 3.41282 3.45963 3.56088 3.97322 4.08176 4.42173 4.50175 4.53101 4.66717 4.76749 4.93831 5.02930 5.09759 5.20443 5.34490 5.39657 5.46279 5.55481 5.73323 5.73529 5.79268 5.92515 6.26843 6.38134 6.41612 6.73828 6.94185 7.17366 7.34000 7.54210 7.71158 7.72604 7.85487 8.04416 8.39494 8.48297 9.09334 9.66059 11.15152 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.002863 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.785246 B = 9777.289001 C = 9972.751480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.516 3.484 13 O -0.540 6.540 14 N -0.729 5.729 15 C 0.194 3.806 16 H 0.109 0.891 17 C 0.068 3.932 18 O -0.567 6.567 19 C -0.139 4.139 20 C -0.067 4.067 21 C -0.174 4.174 22 C 0.096 3.904 23 N -0.485 5.485 24 C 0.129 3.871 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.402 0.598 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.380 0.620 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -25.838 0.310 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.305 3.695 13 O -0.416 6.416 14 N -0.382 5.382 15 C 0.087 3.913 16 H 0.127 0.873 17 C -0.011 4.011 18 O -0.372 6.372 19 C -0.141 4.141 20 C -0.094 4.094 21 C -0.194 4.194 22 C -0.061 4.061 23 N -0.193 5.193 24 C -0.028 4.028 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.237 0.763 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.662 -25.622 0.690 25.892 hybrid contribution 1.197 0.840 -0.327 1.499 sum 4.859 -24.783 0.362 25.257 Atomic orbital electron populations 1.69966 1.06032 1.26532 1.51193 1.25023 0.94855 0.99243 0.95412 0.86594 0.79890 0.83450 0.78088 1.20685 1.21265 1.19854 1.21271 0.93171 0.91029 1.50146 0.92598 1.19134 0.93978 0.91442 0.97160 1.21440 0.98622 0.91513 1.01637 1.21856 0.98151 0.93925 1.03928 1.21320 0.90458 0.83590 0.74148 1.90670 1.17265 1.84702 1.48952 1.46183 1.09909 1.05090 1.77063 1.19759 0.93367 0.83667 0.94459 0.87307 1.22580 0.88159 0.98487 0.91873 1.86445 1.35577 1.88172 1.27021 1.20816 0.96377 0.97909 0.99019 1.21475 1.00247 0.93568 0.94064 1.22110 0.96631 0.98721 1.01966 1.22818 0.91843 0.97710 0.93716 1.67756 1.38583 1.04030 1.08910 1.22566 0.91759 0.93268 0.95189 0.93065 0.96582 0.96591 0.92723 0.92725 0.89193 0.89276 0.76304 0.92101 0.92979 0.77341 0.84681 0.84683 0.82807 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.03 4.44 -26.73 -0.12 -2.15 16 11 C -0.14 -2.29 5.70 -27.89 -0.16 -2.45 16 12 C 0.52 8.08 7.79 -10.99 -0.09 8.00 16 13 O -0.54 -10.25 15.65 5.55 0.09 -10.17 16 14 N -0.73 -8.69 4.98 -54.93 -0.27 -8.96 16 15 C 0.19 2.04 2.62 -69.08 -0.18 1.86 16 16 H 0.11 1.22 7.47 -51.93 -0.39 0.83 16 17 C 0.07 0.65 6.84 37.16 0.25 0.90 16 18 O -0.57 -5.07 12.07 -35.23 -0.43 -5.50 16 19 C -0.14 -1.35 4.84 -104.48 -0.51 -1.86 16 20 C -0.07 -0.55 9.82 -39.28 -0.39 -0.94 16 21 C -0.17 -1.30 10.11 -39.44 -0.40 -1.69 16 22 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 23 N -0.48 -5.36 10.36 -13.26 -0.14 -5.50 16 24 C 0.13 1.37 9.25 -17.55 -0.16 1.20 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.40 4.12 6.89 -40.82 -0.28 3.84 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.38 1.97 9.12 45.56 0.42 2.38 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.56 6.69 -52.49 -0.35 1.21 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -35.14 334.77 -7.27 -42.41 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.79 Total: 2.07 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.49 Total: -9.96 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.33 Total: -40.97 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.34 Total: -15.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.14 -7.27 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332166663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.615 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds