Wall clock time and date at job start Tue Mar 31 2020 00:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47449 * 270.00486 * 3 2 1 5 5 H 1.48504 * 109.46719 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.46936 * 149.99850 * 3 2 1 7 7 C 1.37872 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99817 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99907 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47203 * 35.00363 * 15 14 12 17 17 C 1.52996 * 109.46990 * 274.99715 * 15 14 12 18 18 O 1.42893 * 109.47326 * 294.99914 * 17 15 14 19 19 C 1.50704 * 109.47073 * 154.99718 * 15 14 12 20 20 C 1.38665 * 120.42281 * 220.02004 * 19 15 14 21 21 C 1.38627 * 118.42233 * 179.97438 * 20 19 15 22 22 C 1.38225 * 119.16163 * 0.02562 * 21 20 19 23 23 N 1.31847 * 120.76447 * 359.97438 * 22 21 20 24 24 C 1.31891 * 121.72615 * 359.97438 * 23 22 21 25 25 H 0.97006 * 119.99953 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46793 * 59.99559 * 9 7 2 27 27 H 1.09003 * 109.46640 * 300.00233 * 9 7 2 28 28 H 1.09002 * 109.46878 * 59.99715 * 10 9 7 29 29 H 1.08995 * 109.47144 * 299.99992 * 10 9 7 30 30 H 1.09002 * 109.47286 * 60.00207 * 11 10 9 31 31 H 1.08995 * 109.47311 * 300.00133 * 11 10 9 32 32 H 0.96993 * 119.99930 * 359.97438 * 14 12 11 33 33 H 1.08998 * 109.47127 * 55.00410 * 17 15 14 34 34 H 1.09005 * 109.47131 * 175.00031 * 17 15 14 35 35 H 0.96698 * 114.00243 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.78753 * 0.02562 * 20 19 15 37 37 H 1.08010 * 120.41700 * 180.02562 * 21 20 19 38 38 H 1.07996 * 119.61355 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.61758 * 180.28019 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4596 -6.1325 -0.0024 13 8 3.6520 -5.9109 -0.0018 14 7 2.0103 -7.4032 -0.0034 15 6 2.9624 -8.5167 -0.0032 16 1 3.8378 -8.2461 0.5871 17 6 3.3904 -8.8219 -1.4400 18 8 2.2632 -9.2885 -2.1840 19 6 2.3096 -9.7356 0.5962 20 6 3.0233 -10.5691 1.4440 21 6 2.3818 -11.6786 1.9724 22 6 1.0617 -11.9159 1.6386 23 7 0.4139 -11.1015 0.8289 24 6 0.9919 -10.0363 0.3086 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5562 -0.8920 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6046 0.8890 29 1 2.8726 -3.6039 -0.8909 30 1 0.8541 -5.0447 -0.8923 31 1 0.8533 -5.0450 0.8876 32 1 1.0567 -7.5804 -0.0035 33 1 3.7815 -7.9158 -1.9028 34 1 4.1643 -9.5895 -1.4333 35 1 2.4615 -9.5022 -3.1060 36 1 4.0542 -10.3583 1.6875 37 1 2.9070 -12.3492 2.6365 38 1 0.5550 -12.7783 2.0457 39 1 0.4278 -9.3897 -0.3472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332166663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:19 Heat of formation + Delta-G solvation = -94.413673 kcal Electronic energy + Delta-G solvation = -20781.966413 eV Core-core repulsion = 17494.828076 eV Total energy + Delta-G solvation = -3287.138337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57595 -40.52467 -38.12502 -36.19307 -35.79571 -34.07083 -33.52355 -32.32330 -30.15525 -29.01099 -25.95289 -24.90326 -24.59367 -22.72814 -21.73005 -21.18150 -18.86387 -18.47803 -18.23734 -17.62256 -17.40875 -16.78194 -16.71759 -16.46303 -15.97502 -15.37947 -15.25700 -14.76302 -14.67408 -14.34119 -14.24248 -13.96536 -13.78177 -13.61082 -13.09824 -13.05676 -12.62252 -12.50957 -12.43879 -12.37888 -11.55026 -11.46893 -11.27810 -11.12262 -10.78716 -10.73016 -10.54199 -10.39157 -10.20335 -9.91238 -8.19906 -6.30065 0.12688 0.33703 1.39809 1.41056 1.52561 1.62314 2.12516 2.42159 2.86959 3.13095 3.27102 3.40664 3.73233 3.87641 3.92329 4.04494 4.09664 4.21993 4.24287 4.28461 4.40541 4.54689 4.57917 4.70143 4.82719 4.87513 4.97453 5.11399 5.17104 5.19541 5.24069 5.43581 5.54966 5.75979 5.76014 5.87394 6.27383 6.47439 6.83036 6.85775 7.03664 7.20915 7.38699 8.91734 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.002863 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.785246 B = 9777.289001 C = 9972.751480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.080 4.080 11 C -0.133 4.133 12 C 0.522 3.478 13 O -0.577 6.577 14 N -0.712 5.712 15 C 0.192 3.808 16 H 0.104 0.896 17 C 0.074 3.926 18 O -0.577 6.577 19 C -0.145 4.145 20 C -0.072 4.072 21 C -0.167 4.167 22 C 0.086 3.914 23 N -0.514 5.514 24 C 0.115 3.885 25 H 0.264 0.736 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.411 0.589 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -27.135 0.748 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.119 4.119 11 C -0.172 4.172 12 C 0.310 3.690 13 O -0.457 6.457 14 N -0.365 5.365 15 C 0.086 3.914 16 H 0.121 0.879 17 C -0.005 4.005 18 O -0.385 6.385 19 C -0.147 4.147 20 C -0.098 4.098 21 C -0.186 4.186 22 C -0.071 4.071 23 N -0.222 5.222 24 C -0.041 4.041 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.245 0.755 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.195 0.805 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.373 -26.964 1.110 27.339 hybrid contribution 0.930 1.138 -0.450 1.536 sum 5.302 -25.827 0.660 26.374 Atomic orbital electron populations 1.70075 1.07561 1.27788 1.51647 1.25927 0.95822 1.03143 0.94710 0.85487 0.78635 0.78627 0.78555 1.19685 1.20378 1.19167 1.21699 0.93387 0.92759 1.50639 0.92915 1.19026 0.94245 0.92496 0.95446 1.21145 0.97564 0.92713 1.00433 1.21689 0.98051 0.91902 1.05591 1.20979 0.89471 0.84452 0.74065 1.90658 1.18520 1.85343 1.51137 1.46001 1.10840 1.04369 1.75245 1.19868 0.92757 0.83322 0.95423 0.87864 1.22454 0.88676 0.98365 0.91015 1.86412 1.35577 1.88085 1.28377 1.20713 0.96268 0.97883 0.99869 1.21811 1.01239 0.93430 0.93313 1.22456 0.96159 0.98539 1.01460 1.23326 0.92674 0.97959 0.93105 1.67739 1.39646 1.04740 1.10113 1.22542 0.92193 0.93626 0.95783 0.92676 0.98171 0.98210 0.93925 0.93874 0.87579 0.87658 0.75190 0.93992 0.90860 0.75464 0.82641 0.81515 0.80461 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.08 -3.53 4.44 30.59 0.14 -3.40 16 11 C -0.13 -4.35 5.70 29.85 0.17 -4.18 16 12 C 0.52 16.19 7.79 87.66 0.68 16.88 16 13 O -0.58 -22.07 15.65 -3.06 -0.05 -22.12 16 14 N -0.71 -16.46 4.98 -446.09 -2.22 -18.68 16 15 C 0.19 3.86 2.62 44.24 0.12 3.97 16 16 H 0.10 2.22 7.47 -2.39 -0.02 2.20 16 17 C 0.07 1.32 6.84 71.98 0.49 1.82 16 18 O -0.58 -9.66 12.07 -148.98 -1.80 -11.46 16 19 C -0.14 -2.62 4.84 -19.77 -0.10 -2.71 16 20 C -0.07 -1.01 9.82 22.46 0.22 -0.79 16 21 C -0.17 -1.99 10.11 22.36 0.23 -1.76 16 22 C 0.09 1.30 11.18 84.69 0.95 2.25 16 23 N -0.51 -10.80 10.36 -195.85 -2.03 -12.83 16 24 C 0.12 2.33 9.25 84.67 0.78 3.11 16 25 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 29 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.41 8.08 6.89 -92.71 -0.64 7.44 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.40 3.59 9.12 -74.06 -0.68 2.92 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.15 3.00 6.69 -2.91 -0.02 2.98 16 Total: -1.00 -76.04 334.77 0.49 -75.56 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.25 Total: 13.71 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.52 Total: -14.85 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.96 Total: -88.20 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.85 Total: -33.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.04 0.49 -75.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332166663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.858 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds