Wall clock time and date at job start Tue Mar 31 2020 00:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47164 * 270.00211 * 3 2 1 5 5 H 1.48497 * 109.47193 * 30.00840 * 3 2 1 6 6 H 1.48506 * 109.47011 * 150.00246 * 3 2 1 7 7 C 1.37880 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47217 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00098 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00166 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00156 * 179.97438 * 14 12 11 16 16 H 1.08991 * 109.47169 * 325.00089 * 15 14 12 17 17 C 1.52999 * 109.47084 * 84.99768 * 15 14 12 18 18 O 1.42903 * 109.47256 * 65.00345 * 17 15 14 19 19 C 1.50699 * 109.46998 * 204.99776 * 15 14 12 20 20 C 1.38672 * 120.41612 * 140.00002 * 19 15 14 21 21 C 1.38636 * 118.41811 * 180.02562 * 20 19 15 22 22 C 1.38223 * 119.16104 * 0.02562 * 21 20 19 23 23 N 1.31849 * 120.76594 * 359.97438 * 22 21 20 24 24 C 1.31892 * 121.72681 * 359.70615 * 23 22 21 25 25 H 0.96995 * 119.99370 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47100 * 59.99803 * 9 7 2 27 27 H 1.09011 * 109.46846 * 300.00502 * 9 7 2 28 28 H 1.09003 * 109.46961 * 59.99717 * 10 9 7 29 29 H 1.08994 * 109.46883 * 300.00046 * 10 9 7 30 30 H 1.09002 * 109.46867 * 59.99565 * 11 10 9 31 31 H 1.09004 * 109.46682 * 299.99775 * 11 10 9 32 32 H 0.97004 * 119.99534 * 359.97438 * 14 12 11 33 33 H 1.08997 * 109.47286 * 304.99906 * 17 15 14 34 34 H 1.09008 * 109.47201 * 184.99686 * 17 15 14 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.79489 * 359.97438 * 20 19 15 37 37 H 1.08000 * 120.41711 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.61406 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.62083 * 180.30925 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4594 -6.1326 -0.0005 13 8 3.6518 -5.9110 -0.0009 14 7 2.0102 -7.4033 -0.0006 15 6 2.9621 -8.5168 -0.0018 16 1 3.8375 -8.2457 -0.5918 17 6 3.3903 -8.8232 1.4347 18 8 2.2630 -9.2905 2.1784 19 6 2.3093 -9.7351 -0.6022 20 6 3.0231 -10.5681 -1.4504 21 6 2.3816 -11.6772 -1.9798 22 6 1.0610 -11.9139 -1.6473 23 7 0.4132 -11.1000 -0.8372 24 6 0.9933 -10.0392 -0.3103 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8532 -5.0451 -0.8896 31 1 0.8539 -5.0446 0.8904 32 1 1.0564 -7.5805 0.0001 33 1 3.7814 -7.9176 1.8983 34 1 4.1641 -9.5910 1.4273 35 1 2.4612 -9.5043 3.1004 36 1 4.0541 -10.3574 -1.6935 37 1 2.9070 -12.3478 -2.6436 38 1 0.5540 -12.7755 -2.0559 39 1 0.4319 -9.3981 0.3532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332166667.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:22 Heat of formation + Delta-G solvation = -68.084549 kcal Electronic energy + Delta-G solvation = -20780.773471 eV Core-core repulsion = 17494.776850 eV Total energy + Delta-G solvation = -3285.996620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77077 -39.44098 -37.29002 -35.00557 -34.14795 -32.83241 -32.07525 -31.44195 -28.99935 -27.51820 -24.50966 -23.97725 -23.62827 -21.53236 -20.41829 -19.78940 -17.87535 -17.63455 -16.81155 -16.61029 -16.08406 -15.86606 -15.55411 -15.10533 -14.49479 -14.39706 -14.27761 -13.70947 -13.57188 -13.35297 -13.28835 -12.63970 -12.39580 -12.25148 -11.80403 -11.69667 -11.32456 -10.79723 -10.60146 -10.52741 -10.37498 -10.10175 -9.73730 -9.69664 -9.66553 -9.36306 -9.23043 -9.07927 -8.99486 -8.30745 -5.96400 -3.97820 0.79562 0.98288 2.86716 3.15975 3.35487 3.41267 3.45897 3.56103 3.97357 4.08219 4.42240 4.50171 4.53169 4.66862 4.76727 4.93842 5.02983 5.09785 5.20447 5.34503 5.39626 5.46292 5.55676 5.73288 5.73585 5.79301 5.92572 6.26858 6.38196 6.41727 6.73829 6.94191 7.17388 7.33914 7.54244 7.71213 7.72621 7.85491 8.04449 8.39533 8.48313 9.09355 9.66034 11.15147 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.002863 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.986419 B = 9777.511941 C = 9972.935868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.516 3.484 13 O -0.540 6.540 14 N -0.729 5.729 15 C 0.194 3.806 16 H 0.109 0.891 17 C 0.068 3.932 18 O -0.567 6.567 19 C -0.139 4.139 20 C -0.067 4.067 21 C -0.174 4.174 22 C 0.096 3.904 23 N -0.485 5.485 24 C 0.129 3.871 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.380 0.620 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -25.843 -0.300 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.305 3.695 13 O -0.416 6.416 14 N -0.382 5.382 15 C 0.087 3.913 16 H 0.127 0.873 17 C -0.011 4.011 18 O -0.372 6.372 19 C -0.141 4.141 20 C -0.094 4.094 21 C -0.194 4.194 22 C -0.061 4.061 23 N -0.193 5.193 24 C -0.028 4.028 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.237 0.763 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.663 -25.626 -0.674 25.895 hybrid contribution 1.198 0.840 0.305 1.494 sum 4.861 -24.786 -0.369 25.261 Atomic orbital electron populations 1.69965 1.06033 1.26532 1.51190 1.25025 0.94856 0.99246 0.95413 0.86593 0.79884 0.83446 0.78092 1.20684 1.21263 1.19857 1.21272 0.93170 0.91028 1.50148 0.92598 1.19133 0.93978 0.91442 0.97160 1.21440 0.98622 0.91514 1.01636 1.21857 0.98153 0.93925 1.03928 1.21318 0.90455 0.83589 0.74148 1.90667 1.17270 1.84700 1.48945 1.46186 1.09909 1.05088 1.77066 1.19756 0.93367 0.83676 0.94452 0.87310 1.22585 0.88159 0.98481 0.91883 1.86446 1.35592 1.88152 1.27034 1.20817 0.96386 0.97897 0.99029 1.21478 1.00231 0.93561 0.94080 1.22110 0.96643 0.98727 1.01951 1.22818 0.91842 0.97666 0.93758 1.67757 1.38544 1.04107 1.08880 1.22571 0.91742 0.93289 0.95179 0.93065 0.96593 0.96581 0.92728 0.92722 0.89285 0.89182 0.76303 0.92099 0.92976 0.77338 0.84683 0.84685 0.82808 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.09 -2.03 4.44 -26.73 -0.12 -2.15 16 11 C -0.14 -2.29 5.70 -27.89 -0.16 -2.45 16 12 C 0.52 8.09 7.79 -10.99 -0.09 8.00 16 13 O -0.54 -10.25 15.64 5.56 0.09 -10.17 16 14 N -0.73 -8.69 4.98 -54.94 -0.27 -8.96 16 15 C 0.19 2.04 2.62 -69.08 -0.18 1.86 16 16 H 0.11 1.22 7.47 -51.93 -0.39 0.83 16 17 C 0.07 0.64 6.84 37.16 0.25 0.90 16 18 O -0.57 -5.06 12.04 -35.23 -0.42 -5.49 16 19 C -0.14 -1.35 4.84 -104.48 -0.51 -1.86 16 20 C -0.07 -0.55 9.82 -39.27 -0.39 -0.94 16 21 C -0.17 -1.30 10.11 -39.44 -0.40 -1.69 16 22 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 23 N -0.48 -5.37 10.36 -13.26 -0.14 -5.50 16 24 C 0.13 1.36 9.24 -17.55 -0.16 1.20 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.40 4.12 6.91 -40.82 -0.28 3.84 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.38 1.96 9.12 45.56 0.42 2.38 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.57 6.68 -52.49 -0.35 1.22 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -35.13 334.76 -7.27 -42.40 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.79 Total: 2.07 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.49 Total: -9.96 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.33 Total: -40.97 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.34 Total: -15.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.13 -7.27 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332166667.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.682 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds