Wall clock time and date at job start Tue Mar 31 2020 00:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47035 * 266.47609 * 3 2 1 5 5 H 1.48494 * 109.47390 * 26.47811 * 3 2 1 6 6 H 1.48506 * 109.47025 * 146.47655 * 3 2 1 7 7 C 1.40024 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99725 * 350.46076 * 7 2 1 9 9 C 1.41315 * 120.00053 * 170.46209 * 7 2 1 10 10 C 1.40595 * 119.78385 * 152.41179 * 9 7 2 11 11 C 1.38347 * 119.14339 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.68293 * 359.97438 * 11 10 9 13 13 C 1.39754 * 119.49365 * 0.02562 * 12 11 10 14 14 N 1.38827 * 119.58313 * 179.97438 * 13 12 11 15 15 C 1.46852 * 110.99714 * 203.76691 * 14 13 12 16 16 C 1.53041 * 109.52280 * 174.16077 * 15 14 13 17 17 C 1.53122 * 109.27435 * 59.18144 * 16 15 14 18 18 O 1.42898 * 109.52349 * 62.25539 * 17 16 15 19 19 C 1.53002 * 109.51833 * 182.37958 * 17 16 15 20 20 O 1.42903 * 109.46940 * 179.87973 * 19 17 16 21 21 C 1.53112 * 109.21353 * 302.31326 * 17 16 15 22 22 C 1.46849 * 111.00131 * 79.56690 * 14 13 12 23 23 N 1.31979 * 120.83246 * 0.25384 * 13 12 11 24 24 H 0.97006 * 119.99208 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.42648 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65346 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.25530 * 180.02562 * 12 11 10 28 28 H 1.09002 * 109.45777 * 54.14897 * 15 14 13 29 29 H 1.08998 * 109.46689 * 294.17784 * 15 14 13 30 30 H 1.09005 * 109.50159 * 299.24633 * 16 15 14 31 31 H 1.09000 * 109.50417 * 179.12466 * 16 15 14 32 32 H 0.96698 * 113.99960 * 180.12617 * 18 17 16 33 33 H 1.09007 * 109.47296 * 299.87359 * 19 17 16 34 34 H 1.08995 * 109.47490 * 59.87600 * 19 17 16 35 35 H 0.96701 * 113.99794 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.50282 * 177.62897 * 21 17 16 37 37 H 1.08996 * 109.50468 * 297.74339 * 21 17 16 38 38 H 1.09002 * 109.45895 * 305.85050 * 22 14 13 39 39 H 1.08995 * 109.46836 * 65.82377 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5635 2.0034 -1.3974 5 1 1.4038 2.6730 0.6242 6 1 3.4998 1.4628 0.7733 7 6 2.0076 -1.2127 0.0005 8 1 1.4787 -2.1414 0.1560 9 6 3.4061 -1.2213 -0.2022 10 6 4.1847 -2.2562 0.3449 11 6 5.5527 -2.2512 0.1386 12 6 6.1099 -1.2218 -0.6040 13 6 5.2830 -0.2213 -1.1220 14 7 5.8391 0.8108 -1.8655 15 6 4.9794 2.0011 -1.8388 16 6 5.6884 3.1600 -2.5433 17 6 5.9947 2.7610 -3.9895 18 8 4.7718 2.5127 -4.6856 19 6 6.7564 3.8931 -4.6817 20 8 7.0442 3.5185 -6.0304 21 6 6.8514 1.4920 -3.9914 22 6 6.1080 0.3810 -3.2437 23 7 3.9807 -0.2423 -0.9085 24 1 -0.4849 0.8402 -0.0004 25 1 3.7209 -3.0447 0.9188 26 1 6.1741 -3.0339 0.5481 27 1 7.1750 -1.1931 -0.7810 28 1 4.7726 2.2766 -0.8046 29 1 4.0420 1.7837 -2.3509 30 1 6.6192 3.3870 -2.0234 31 1 5.0437 4.0389 -2.5370 32 1 4.8908 2.2527 -5.6094 33 1 6.1467 4.7967 -4.6779 34 1 7.6890 4.0818 -4.1502 35 1 7.5272 4.1904 -6.5307 36 1 7.0371 1.1798 -5.0191 37 1 7.8005 1.6928 -3.4944 38 1 6.7210 -0.5202 -3.2299 39 1 5.1654 0.1713 -3.7492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333738716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:41 Heat of formation + Delta-G solvation = -64.324901 kcal Electronic energy + Delta-G solvation = -22608.426644 eV Core-core repulsion = 19322.593055 eV Total energy + Delta-G solvation = -3285.833590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -40.02877 -38.59049 -36.66396 -35.41149 -33.52619 -32.19928 -31.28033 -30.57091 -29.38471 -26.81888 -25.50132 -23.19513 -22.62574 -21.29360 -20.56776 -19.58074 -17.67647 -17.59870 -16.79413 -16.33605 -15.35743 -14.87106 -14.84940 -14.65218 -14.62615 -14.42176 -13.82531 -13.44216 -12.90933 -12.76257 -12.66548 -12.40281 -12.07359 -11.91988 -11.44382 -11.36254 -11.15019 -11.07653 -10.86242 -10.55795 -10.40675 -10.37849 -10.17232 -9.89871 -9.66852 -9.19395 -8.65208 -8.39175 -7.91389 -7.32080 -6.84475 -4.63685 2.44522 2.63847 3.37479 3.45758 3.53071 3.90575 4.17579 4.29356 4.36214 4.57122 4.74808 4.81012 5.02949 5.23649 5.28917 5.41559 5.50389 5.65923 5.74996 5.80719 5.91630 5.93410 6.01758 6.11363 6.17022 6.30613 6.33197 6.42545 6.57365 6.68736 6.75426 7.14037 7.25110 7.30340 7.44145 7.51476 7.70081 7.78956 8.00786 8.23882 8.62528 8.67740 9.54629 10.10348 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.006580 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.481872 B = 4254.019486 C = 5168.117199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.090 3.910 3 Si 0.964 3.036 4 H -0.253 1.253 5 H -0.321 1.321 6 H -0.270 1.270 7 C -0.425 4.425 8 H 0.096 0.904 9 C 0.265 3.735 10 C -0.264 4.264 11 C -0.045 4.045 12 C -0.288 4.288 13 C 0.330 3.670 14 N -0.484 5.484 15 C 0.059 3.941 16 C -0.105 4.105 17 C 0.136 3.864 18 O -0.549 6.549 19 C 0.051 3.949 20 O -0.573 6.573 21 C -0.133 4.133 22 C 0.068 3.932 23 N -0.583 5.583 24 H 0.286 0.714 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.377 0.623 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.380 0.620 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.847 7.656 -8.296 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.132 4.132 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.253 1.253 6 H -0.196 1.196 7 C -0.457 4.457 8 H 0.114 0.886 9 C 0.140 3.860 10 C -0.286 4.286 11 C -0.069 4.069 12 C -0.312 4.312 13 C 0.096 3.904 14 N -0.205 5.205 15 C -0.068 4.068 16 C -0.143 4.143 17 C 0.095 3.905 18 O -0.355 6.355 19 C -0.027 4.027 20 O -0.378 6.378 21 C -0.171 4.171 22 C -0.059 4.059 23 N -0.304 5.304 24 H 0.096 0.904 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.225 0.775 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.227 0.773 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.926 8.085 -7.650 16.313 hybrid contribution 0.671 0.218 -0.579 0.913 sum 12.597 8.303 -8.229 17.186 Atomic orbital electron populations 1.69637 1.08431 1.30661 1.34489 1.26230 0.94772 1.02906 0.89248 0.85473 0.77363 0.77134 0.80437 1.17823 1.25272 1.19570 1.19390 0.89523 0.95715 1.41077 0.88576 1.18422 0.93666 0.86867 0.87092 1.21728 0.93573 1.04144 1.09145 1.20901 0.94793 0.96015 0.95194 1.20715 0.98565 1.00042 1.11921 1.19521 0.88426 0.89385 0.93025 1.59681 1.44655 1.04273 1.11881 1.22289 0.95571 0.88383 1.00606 1.21644 1.01759 0.98998 0.91933 1.21276 0.84359 0.92789 0.92065 1.86582 1.29818 1.90948 1.28136 1.22975 0.98906 0.97929 0.82911 1.86398 1.79655 1.47262 1.24506 1.22201 0.99111 0.95144 1.00690 1.22004 0.99739 0.97233 0.86893 1.67365 1.10367 1.30172 1.22541 0.90377 0.87370 0.87673 0.87647 0.90975 0.90841 0.90031 0.90799 0.77514 0.92927 0.92787 0.77341 0.90541 0.90570 0.90577 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.40 13.92 55.55 0.77 -21.63 16 2 C 0.09 2.48 5.51 -17.34 -0.10 2.39 16 3 Si 0.96 24.09 22.84 -169.99 -3.88 20.21 16 4 H -0.25 -6.24 4.91 56.52 0.28 -5.96 16 5 H -0.32 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -7.03 6.69 56.52 0.38 -6.66 16 7 C -0.43 -11.94 9.67 -37.74 -0.37 -12.31 16 8 H 0.10 2.75 8.06 -52.48 -0.42 2.32 16 9 C 0.27 7.04 5.90 -85.00 -0.50 6.54 16 10 C -0.26 -6.24 9.83 -38.65 -0.38 -6.62 16 11 C -0.04 -0.94 10.15 -39.40 -0.40 -1.34 16 12 C -0.29 -6.16 9.75 -38.87 -0.38 -6.54 16 13 C 0.33 7.61 5.85 -155.32 -0.91 6.70 16 14 N -0.48 -9.62 4.61 -173.12 -0.80 -10.42 16 15 C 0.06 1.17 3.42 -3.83 -0.01 1.16 16 16 C -0.11 -1.59 5.11 -26.65 -0.14 -1.73 16 17 C 0.14 1.85 0.80 -90.50 -0.07 1.77 16 18 O -0.55 -8.46 11.84 -44.77 -0.53 -8.99 16 19 C 0.05 0.52 6.17 37.16 0.23 0.75 16 20 O -0.57 -5.34 12.54 -44.77 -0.56 -5.90 16 21 C -0.13 -1.80 4.91 -26.59 -0.13 -1.93 16 22 C 0.07 1.17 5.24 -3.77 -0.02 1.15 16 23 N -0.58 -15.05 4.93 -10.33 -0.05 -15.10 16 24 H 0.29 7.26 8.29 -40.82 -0.34 6.93 16 25 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 26 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.07 1.55 5.93 -51.93 -0.31 1.24 16 29 H 0.07 1.69 5.58 -51.93 -0.29 1.40 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.38 4.71 8.57 45.56 0.39 5.10 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.38 1.81 9.12 45.56 0.42 2.23 16 36 H 0.08 0.95 7.77 -51.93 -0.40 0.55 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 39 H 0.05 0.90 7.76 -51.93 -0.40 0.49 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -31.49 305.56 -7.71 -39.20 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.09 Total: 8.03 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.17 Total: -10.02 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.08 Total: -47.14 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.09 Total: -14.89 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -3.88 Total: 20.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.49 -7.71 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333738716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.126 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds