Wall clock time and date at job start Tue Mar 31 2020 00:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48497 * 109.47035 * 266.47609 * 3 2 1 5 5 H 1.48494 * 109.47390 * 26.47811 * 3 2 1 6 6 H 1.48506 * 109.47025 * 146.47655 * 3 2 1 7 7 C 1.40024 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99725 * 350.46076 * 7 2 1 9 9 C 1.41315 * 120.00053 * 170.46209 * 7 2 1 10 10 C 1.40595 * 119.78385 * 152.41179 * 9 7 2 11 11 C 1.38347 * 119.14339 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.68293 * 359.97438 * 11 10 9 13 13 C 1.39754 * 119.49365 * 0.02562 * 12 11 10 14 14 N 1.38827 * 119.58313 * 179.97438 * 13 12 11 15 15 C 1.46852 * 110.99714 * 203.76691 * 14 13 12 16 16 C 1.53041 * 109.52280 * 174.16077 * 15 14 13 17 17 C 1.53122 * 109.27435 * 59.18144 * 16 15 14 18 18 O 1.42898 * 109.52349 * 62.25539 * 17 16 15 19 19 C 1.53002 * 109.51833 * 182.37958 * 17 16 15 20 20 O 1.42903 * 109.46940 * 179.87973 * 19 17 16 21 21 C 1.53112 * 109.21353 * 302.31326 * 17 16 15 22 22 C 1.46849 * 111.00131 * 79.56690 * 14 13 12 23 23 N 1.31979 * 120.83246 * 0.25384 * 13 12 11 24 24 H 0.97006 * 119.99208 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.42648 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65346 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.25530 * 180.02562 * 12 11 10 28 28 H 1.09002 * 109.45777 * 54.14897 * 15 14 13 29 29 H 1.08998 * 109.46689 * 294.17784 * 15 14 13 30 30 H 1.09005 * 109.50159 * 299.24633 * 16 15 14 31 31 H 1.09000 * 109.50417 * 179.12466 * 16 15 14 32 32 H 0.96698 * 113.99960 * 180.12617 * 18 17 16 33 33 H 1.09007 * 109.47296 * 299.87359 * 19 17 16 34 34 H 1.08995 * 109.47490 * 59.87600 * 19 17 16 35 35 H 0.96701 * 113.99794 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.50282 * 177.62897 * 21 17 16 37 37 H 1.08996 * 109.50468 * 297.74339 * 21 17 16 38 38 H 1.09002 * 109.45895 * 305.85050 * 22 14 13 39 39 H 1.08995 * 109.46836 * 65.82377 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5635 2.0034 -1.3974 5 1 1.4038 2.6730 0.6242 6 1 3.4998 1.4628 0.7733 7 6 2.0076 -1.2127 0.0005 8 1 1.4787 -2.1414 0.1560 9 6 3.4061 -1.2213 -0.2022 10 6 4.1847 -2.2562 0.3449 11 6 5.5527 -2.2512 0.1386 12 6 6.1099 -1.2218 -0.6040 13 6 5.2830 -0.2213 -1.1220 14 7 5.8391 0.8108 -1.8655 15 6 4.9794 2.0011 -1.8388 16 6 5.6884 3.1600 -2.5433 17 6 5.9947 2.7610 -3.9895 18 8 4.7718 2.5127 -4.6856 19 6 6.7564 3.8931 -4.6817 20 8 7.0442 3.5185 -6.0304 21 6 6.8514 1.4920 -3.9914 22 6 6.1080 0.3810 -3.2437 23 7 3.9807 -0.2423 -0.9085 24 1 -0.4849 0.8402 -0.0004 25 1 3.7209 -3.0447 0.9188 26 1 6.1741 -3.0339 0.5481 27 1 7.1750 -1.1931 -0.7810 28 1 4.7726 2.2766 -0.8046 29 1 4.0420 1.7837 -2.3509 30 1 6.6192 3.3870 -2.0234 31 1 5.0437 4.0389 -2.5370 32 1 4.8908 2.2527 -5.6094 33 1 6.1467 4.7967 -4.6779 34 1 7.6890 4.0818 -4.1502 35 1 7.5272 4.1904 -6.5307 36 1 7.0371 1.1798 -5.0191 37 1 7.8005 1.6928 -3.4944 38 1 6.7210 -0.5202 -3.2299 39 1 5.1654 0.1713 -3.7492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333738716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:40 Heat of formation + Delta-G solvation = -90.167709 kcal Electronic energy + Delta-G solvation = -22609.547273 eV Core-core repulsion = 19322.593055 eV Total energy + Delta-G solvation = -3286.954218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47579 -40.07302 -37.84360 -36.51100 -35.48072 -33.55812 -33.07253 -31.98323 -31.00390 -28.20580 -27.20545 -24.59066 -24.00152 -22.98938 -22.19823 -20.84703 -19.65299 -18.48668 -18.31764 -17.47229 -16.76047 -16.55723 -16.49676 -16.19649 -16.10320 -15.60626 -15.18286 -14.80871 -14.70270 -14.50075 -14.11042 -13.63570 -13.56346 -13.32036 -13.05010 -12.84065 -12.75034 -12.58554 -12.43969 -12.22877 -12.15311 -11.97703 -11.42771 -11.21715 -10.93590 -10.73296 -10.42726 -10.18986 -9.82729 -9.12776 -8.89819 -6.71767 0.57210 0.79080 1.31021 1.44138 1.49756 2.26842 2.54465 2.72807 3.14959 3.26418 3.49057 3.67263 3.78744 3.99354 4.13034 4.23239 4.33032 4.38407 4.45615 4.49106 4.53561 4.66115 4.69147 4.72787 4.76176 4.79807 4.84126 4.97488 5.03817 5.11235 5.23768 5.28377 5.48401 5.68304 5.79838 5.90439 6.03193 6.27405 6.62022 6.71102 6.78289 6.91701 7.63113 8.09351 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.006580 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.481872 B = 4254.019486 C = 5168.117199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.059 3.941 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.312 1.312 6 H -0.288 1.288 7 C -0.465 4.465 8 H 0.073 0.927 9 C 0.248 3.752 10 C -0.278 4.278 11 C -0.034 4.034 12 C -0.268 4.268 13 C 0.306 3.694 14 N -0.474 5.474 15 C 0.061 3.939 16 C -0.102 4.102 17 C 0.129 3.871 18 O -0.575 6.575 19 C 0.063 3.937 20 O -0.585 6.585 21 C -0.121 4.121 22 C 0.067 3.933 23 N -0.603 5.603 24 H 0.293 0.707 25 H 0.118 0.882 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.387 0.613 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 8.544 -9.261 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.158 4.158 3 Si 0.846 3.154 4 H -0.182 1.182 5 H -0.243 1.243 6 H -0.215 1.215 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.121 3.879 10 C -0.300 4.300 11 C -0.058 4.058 12 C -0.292 4.292 13 C 0.074 3.926 14 N -0.195 5.195 15 C -0.066 4.066 16 C -0.140 4.140 17 C 0.088 3.912 18 O -0.383 6.383 19 C -0.015 4.015 20 O -0.394 6.394 21 C -0.159 4.159 22 C -0.059 4.059 23 N -0.325 5.325 24 H 0.103 0.897 25 H 0.136 0.864 26 H 0.171 0.829 27 H 0.159 0.841 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 16.039 8.989 -8.649 20.319 hybrid contribution -0.339 -0.173 -0.338 0.509 sum 15.700 8.816 -8.988 20.124 Atomic orbital electron populations 1.69650 1.08967 1.31429 1.37033 1.26716 0.95293 1.04604 0.89189 0.84745 0.75595 0.75241 0.79790 1.18159 1.24251 1.21486 1.19382 0.90823 0.95172 1.44438 0.90875 1.18574 0.93521 0.88273 0.87510 1.21947 0.94982 1.03710 1.09317 1.21396 0.93930 0.96697 0.93802 1.21240 1.00130 0.98511 1.09313 1.20152 0.87923 0.90879 0.93687 1.59856 1.43300 1.03339 1.13026 1.22152 0.94905 0.90250 0.99334 1.21659 1.02477 0.96894 0.92978 1.21387 0.84165 0.94225 0.91385 1.86562 1.31428 1.91239 1.29106 1.22720 0.99396 0.96008 0.83420 1.86339 1.80220 1.48570 1.24238 1.22152 0.99085 0.93639 1.01025 1.22122 0.98982 0.99425 0.85364 1.67288 1.12208 1.30334 1.22640 0.89703 0.86418 0.82896 0.84096 0.93277 0.94799 0.87434 0.90213 0.76403 0.92527 0.90514 0.74837 0.89021 0.88665 0.89508 0.96520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.18 13.92 21.84 0.30 -48.87 16 2 C 0.06 3.42 5.51 85.29 0.47 3.89 16 3 Si 1.01 52.14 22.84 68.60 1.57 53.70 16 4 H -0.26 -13.10 4.91 99.48 0.49 -12.61 16 5 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.29 -15.38 6.69 99.48 0.67 -14.72 16 7 C -0.47 -27.57 9.67 23.46 0.23 -27.34 16 8 H 0.07 4.49 8.06 -2.91 -0.02 4.47 16 9 C 0.25 13.50 5.90 40.19 0.24 13.73 16 10 C -0.28 -12.95 9.83 22.87 0.22 -12.72 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.27 -10.53 9.75 22.73 0.22 -10.30 16 13 C 0.31 13.75 5.85 133.40 0.78 14.53 16 14 N -0.47 -18.07 4.61 -701.63 -3.24 -21.31 16 15 C 0.06 2.42 3.42 86.33 0.29 2.71 16 16 C -0.10 -2.86 5.11 30.65 0.16 -2.71 16 17 C 0.13 3.14 0.80 -10.71 -0.01 3.13 16 18 O -0.58 -17.14 11.84 -139.86 -1.66 -18.80 16 19 C 0.06 1.02 6.17 71.98 0.44 1.47 16 20 O -0.58 -8.58 12.54 -139.86 -1.75 -10.34 16 21 C -0.12 -2.85 4.91 30.69 0.15 -2.70 16 22 C 0.07 2.17 5.24 86.37 0.45 2.62 16 23 N -0.60 -31.58 4.93 -186.59 -0.92 -32.50 16 24 H 0.29 15.55 8.29 -92.70 -0.77 14.78 16 25 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 26 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.05 2.12 5.93 -2.39 -0.01 2.11 16 29 H 0.03 1.60 5.58 -2.39 -0.01 1.59 16 30 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.39 9.23 8.57 -74.06 -0.63 8.60 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.40 2.16 9.12 -74.06 -0.68 1.49 16 36 H 0.09 1.93 7.77 -2.39 -0.02 1.91 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 2.57 7.89 -2.39 -0.02 2.56 16 39 H 0.02 0.63 7.76 -2.39 -0.02 0.61 16 Total: -1.00 -71.85 305.56 -2.31 -74.16 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.49 Total: 18.73 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 3.88 Total: -14.77 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -3.85 Total: -102.68 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -3.41 Total: -29.14 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 1.57 Total: 53.70 kcal Total: -71.85 -2.31 -74.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333738716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.010 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds