Wall clock time and date at job start Tue Mar 31 2020 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47586 * 240.00272 * 3 2 1 5 5 H 1.48498 * 109.47482 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46866 * 120.00508 * 3 2 1 7 7 C 1.40027 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99252 * 179.97438 * 7 2 1 9 9 C 1.41306 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.40597 * 119.78853 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.14881 * 180.02562 * 10 9 7 12 12 C 1.38645 * 118.68137 * 0.02562 * 11 10 9 13 13 C 1.39749 * 119.48940 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.58314 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.52990 * 109.47538 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47370 * 65.00309 * 16 15 14 18 18 C 1.42901 * 114.00488 * 180.02562 * 17 16 15 19 19 H 1.08994 * 110.45385 * 332.60282 * 18 17 16 20 20 C 1.54512 * 110.50919 * 209.99894 * 18 17 16 21 21 C 1.54482 * 104.06101 * 241.35255 * 20 18 17 22 22 O 1.44428 * 104.80151 * 23.97791 * 21 20 18 23 23 C 1.44421 * 105.27789 * 319.48919 * 22 21 20 24 24 N 1.31979 * 120.83755 * 359.97438 * 13 12 11 25 25 H 0.96994 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.42172 * 0.04195 * 10 9 7 27 27 H 1.07997 * 120.66080 * 180.27354 * 11 10 9 28 28 H 1.08001 * 120.25463 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00598 * 180.02562 * 14 13 12 30 30 H 1.09006 * 109.47190 * 300.00882 * 15 14 13 31 31 H 1.09009 * 109.46882 * 59.99953 * 15 14 13 32 32 H 1.09003 * 109.47322 * 185.00161 * 16 15 14 33 33 H 1.09003 * 109.47535 * 305.00140 * 16 15 14 34 34 H 1.08995 * 110.51629 * 359.97438 * 20 18 17 35 35 H 1.09003 * 110.51012 * 122.57571 * 20 18 17 36 36 H 1.08991 * 110.37080 * 142.81380 * 21 20 18 37 37 H 1.09008 * 110.36950 * 265.15255 * 21 20 18 38 38 H 1.08998 * 110.37458 * 281.67863 * 23 22 21 39 39 H 1.09000 * 110.37271 * 159.34405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6515 -0.0016 11 6 1.3036 -4.8418 -0.0022 12 6 -0.0820 -4.7944 -0.0021 13 6 -0.7280 -3.5552 -0.0010 14 7 -2.1154 -3.5056 -0.0015 15 6 -2.8929 -4.7473 -0.0038 16 6 -4.3861 -4.4142 -0.0046 17 8 -4.7261 -3.7532 -1.2250 18 6 -6.1059 -3.3959 -1.3277 19 1 -6.7201 -4.0741 -0.7356 20 6 -6.5590 -3.4051 -2.8049 21 6 -6.9945 -1.9474 -3.0730 22 8 -6.2747 -1.1619 -2.0979 23 6 -6.3212 -1.9337 -0.8781 24 7 -0.0359 -2.4315 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.0886 -3.6554 -0.0018 27 1 1.8223 -5.7890 0.0014 28 1 -0.6577 -5.7082 -0.0030 29 1 -2.5701 -2.6488 -0.0012 30 1 -2.6497 -5.3267 -0.8945 31 1 -2.6505 -5.3293 0.8855 32 1 -4.9637 -5.3344 0.0834 33 1 -4.6131 -3.7608 0.8379 34 1 -5.7305 -3.6818 -3.4568 35 1 -7.3973 -4.0879 -2.9429 36 1 -6.7151 -1.6476 -4.0829 37 1 -8.0696 -1.8399 -2.9280 38 1 -7.2929 -1.8241 -0.3965 39 1 -5.5246 -1.6234 -0.2020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333866240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:23 Heat of formation + Delta-G solvation = -49.214931 kcal Electronic energy + Delta-G solvation = -21246.555928 eV Core-core repulsion = 17961.377556 eV Total energy + Delta-G solvation = -3285.178372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74854 -38.23585 -37.26725 -34.86246 -33.20089 -31.57601 -30.43944 -29.72665 -28.69869 -27.31201 -25.25832 -23.23058 -22.41272 -21.36480 -21.22418 -20.21638 -17.39935 -17.29486 -16.71600 -16.11834 -15.94185 -15.31241 -15.04660 -14.73902 -14.50023 -13.99280 -13.58098 -13.44628 -13.19359 -12.73168 -12.71265 -12.21034 -11.90635 -11.85177 -11.68261 -11.52961 -11.23064 -11.09966 -10.93883 -10.85549 -10.54257 -10.37231 -10.13936 -9.85947 -9.44943 -9.40328 -8.80876 -7.82902 -7.41675 -6.41653 -6.23836 -4.39777 2.96336 3.16187 3.18551 3.31406 3.37618 3.51450 3.83035 4.05119 4.26046 4.39477 4.69258 4.79602 4.90534 4.92602 5.03207 5.23045 5.26340 5.32815 5.38333 5.47920 5.57527 5.69473 5.84986 5.91794 6.06529 6.19378 6.22153 6.62008 6.64006 6.93971 6.96274 7.01386 7.19109 7.33617 7.67521 7.89124 7.99278 8.24834 8.45121 8.78555 8.88703 9.20827 10.33838 10.49404 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.004599 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.242146 B = 6086.674785 C = 7578.441685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.436 4.436 8 H 0.082 0.918 9 C 0.293 3.707 10 C -0.318 4.318 11 C -0.032 4.032 12 C -0.370 4.370 13 C 0.412 3.588 14 N -0.733 5.733 15 C 0.145 3.855 16 C 0.050 3.950 17 O -0.361 6.361 18 C 0.055 3.945 19 H 0.075 0.925 20 C -0.155 4.155 21 C 0.045 3.955 22 O -0.365 6.365 23 C 0.024 3.976 24 N -0.531 5.531 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 -5.641 -1.590 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.100 0.900 9 C 0.166 3.834 10 C -0.341 4.341 11 C -0.057 4.057 12 C -0.396 4.396 13 C 0.172 3.828 14 N -0.371 5.371 15 C 0.019 3.981 16 C -0.027 4.027 17 O -0.280 6.280 18 C -0.003 4.003 19 H 0.093 0.907 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.283 6.283 23 C -0.054 4.054 24 N -0.253 5.253 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.439 -4.664 -1.765 16.225 hybrid contribution 0.327 -0.170 0.239 0.439 sum -15.113 -4.835 -1.526 15.940 Atomic orbital electron populations 1.70143 1.07087 1.27439 1.28874 1.26045 0.94845 1.00834 0.93674 0.86454 0.80097 0.80809 0.79764 1.19032 1.20360 1.19067 1.19538 0.94080 0.89438 1.43736 0.89998 1.18196 0.86937 0.91805 0.86481 1.21524 0.98349 0.93509 1.20717 1.20578 0.93444 0.96314 0.95318 1.20585 0.94607 0.95415 1.28955 1.18523 0.84312 0.90255 0.89682 1.44035 1.02665 1.06642 1.83761 1.21061 0.87399 0.88456 1.01186 1.22888 0.96439 0.96246 0.87137 1.88136 1.23972 1.77717 1.38210 1.23492 0.84262 0.95764 0.96826 0.90730 1.23084 1.02222 0.97900 0.96068 1.23404 0.95864 0.89636 0.94337 1.89220 1.75729 1.43097 1.20290 1.23976 1.01859 0.90770 0.88752 1.68223 1.07617 1.24337 1.25080 0.91865 0.88792 0.89035 0.89329 0.76688 0.92307 0.91630 0.92258 0.92698 0.89013 0.89861 0.88858 0.92404 0.91815 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.74 11.46 55.55 0.64 -19.10 16 2 C 0.07 1.89 5.50 -17.34 -0.10 1.79 16 3 Si 0.90 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 7 C -0.44 -12.20 9.14 -37.75 -0.34 -12.55 16 8 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 9 C 0.29 8.45 6.55 -85.00 -0.56 7.89 16 10 C -0.32 -8.33 9.83 -38.65 -0.38 -8.71 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.37 -8.82 9.34 -38.87 -0.36 -9.19 16 13 C 0.41 10.50 7.65 -155.32 -1.19 9.32 16 14 N -0.73 -15.46 5.67 -60.40 -0.34 -15.81 16 15 C 0.15 2.30 5.27 -4.04 -0.02 2.28 16 16 C 0.05 0.62 5.91 37.15 0.22 0.84 16 17 O -0.36 -5.19 9.92 -35.23 -0.35 -5.54 16 18 C 0.06 0.61 3.61 -25.16 -0.09 0.51 16 19 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 20 C -0.16 -1.52 6.90 -25.16 -0.17 -1.69 16 21 C 0.04 0.46 7.63 37.94 0.29 0.75 16 22 O -0.37 -5.24 11.65 -35.23 -0.41 -5.65 16 23 C 0.02 0.28 7.38 37.93 0.28 0.56 16 24 N -0.53 -15.27 7.89 -10.33 -0.08 -15.35 16 25 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 26 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 29 H 0.40 8.64 8.59 -40.82 -0.35 8.29 16 30 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 31 H 0.07 0.97 7.92 -51.92 -0.41 0.56 16 32 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.03 8.00 -51.93 -0.42 0.62 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -32.83 328.40 -9.14 -41.97 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.69 Total: 9.54 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.82 Total: -9.36 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.21 Total: -50.26 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.76 Total: -11.19 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.83 -9.14 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333866240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.242 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds