Wall clock time and date at job start Tue Mar 31 2020 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47586 * 240.00272 * 3 2 1 5 5 H 1.48498 * 109.47482 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46866 * 120.00508 * 3 2 1 7 7 C 1.40027 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99252 * 179.97438 * 7 2 1 9 9 C 1.41306 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.40597 * 119.78853 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.14881 * 180.02562 * 10 9 7 12 12 C 1.38645 * 118.68137 * 0.02562 * 11 10 9 13 13 C 1.39749 * 119.48940 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.58314 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.52990 * 109.47538 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47370 * 65.00309 * 16 15 14 18 18 C 1.42901 * 114.00488 * 180.02562 * 17 16 15 19 19 H 1.08994 * 110.45385 * 332.60282 * 18 17 16 20 20 C 1.54512 * 110.50919 * 209.99894 * 18 17 16 21 21 C 1.54482 * 104.06101 * 241.35255 * 20 18 17 22 22 O 1.44428 * 104.80151 * 23.97791 * 21 20 18 23 23 C 1.44421 * 105.27789 * 319.48919 * 22 21 20 24 24 N 1.31979 * 120.83755 * 359.97438 * 13 12 11 25 25 H 0.96994 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.42172 * 0.04195 * 10 9 7 27 27 H 1.07997 * 120.66080 * 180.27354 * 11 10 9 28 28 H 1.08001 * 120.25463 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00598 * 180.02562 * 14 13 12 30 30 H 1.09006 * 109.47190 * 300.00882 * 15 14 13 31 31 H 1.09009 * 109.46882 * 59.99953 * 15 14 13 32 32 H 1.09003 * 109.47322 * 185.00161 * 16 15 14 33 33 H 1.09003 * 109.47535 * 305.00140 * 16 15 14 34 34 H 1.08995 * 110.51629 * 359.97438 * 20 18 17 35 35 H 1.09003 * 110.51012 * 122.57571 * 20 18 17 36 36 H 1.08991 * 110.37080 * 142.81380 * 21 20 18 37 37 H 1.09008 * 110.36950 * 265.15255 * 21 20 18 38 38 H 1.08998 * 110.37458 * 281.67863 * 23 22 21 39 39 H 1.09000 * 110.37271 * 159.34405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6515 -0.0016 11 6 1.3036 -4.8418 -0.0022 12 6 -0.0820 -4.7944 -0.0021 13 6 -0.7280 -3.5552 -0.0010 14 7 -2.1154 -3.5056 -0.0015 15 6 -2.8929 -4.7473 -0.0038 16 6 -4.3861 -4.4142 -0.0046 17 8 -4.7261 -3.7532 -1.2250 18 6 -6.1059 -3.3959 -1.3277 19 1 -6.7201 -4.0741 -0.7356 20 6 -6.5590 -3.4051 -2.8049 21 6 -6.9945 -1.9474 -3.0730 22 8 -6.2747 -1.1619 -2.0979 23 6 -6.3212 -1.9337 -0.8781 24 7 -0.0359 -2.4315 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.0886 -3.6554 -0.0018 27 1 1.8223 -5.7890 0.0014 28 1 -0.6577 -5.7082 -0.0030 29 1 -2.5701 -2.6488 -0.0012 30 1 -2.6497 -5.3267 -0.8945 31 1 -2.6505 -5.3293 0.8855 32 1 -4.9637 -5.3344 0.0834 33 1 -4.6131 -3.7608 0.8379 34 1 -5.7305 -3.6818 -3.4568 35 1 -7.3973 -4.0879 -2.9429 36 1 -6.7151 -1.6476 -4.0829 37 1 -8.0696 -1.8399 -2.9280 38 1 -7.2929 -1.8241 -0.3965 39 1 -5.5246 -1.6234 -0.2020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333866240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:23 Heat of formation + Delta-G solvation = -71.906673 kcal Electronic energy + Delta-G solvation = -21247.539916 eV Core-core repulsion = 17961.377556 eV Total energy + Delta-G solvation = -3286.162360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65715 -40.08012 -38.38129 -36.47637 -35.08690 -32.67171 -32.22228 -31.31894 -29.70535 -28.78986 -27.22494 -24.26971 -23.63701 -23.13369 -22.13478 -22.00368 -19.25956 -18.32304 -18.11419 -17.34848 -16.98074 -16.62396 -16.49341 -16.19189 -15.99113 -15.55800 -14.96602 -14.89683 -14.70219 -14.29420 -13.77742 -13.69344 -13.61294 -12.93444 -12.80312 -12.73295 -12.64246 -12.58547 -12.41302 -12.23897 -12.15060 -11.75143 -11.68414 -11.27645 -11.03178 -10.65159 -10.35269 -9.82355 -9.42157 -8.26278 -8.21015 -6.47452 1.08367 1.36401 1.40563 1.53364 1.59684 2.25323 2.57558 2.74720 2.94092 3.01427 3.57493 3.86504 3.97955 4.06464 4.09277 4.19438 4.25584 4.38415 4.39529 4.44716 4.53561 4.68383 4.74288 4.78079 4.80169 4.88994 4.91162 5.01104 5.01670 5.08369 5.14744 5.37769 5.72886 5.78292 5.97828 6.08701 6.23187 6.31147 6.58704 6.84398 6.96702 7.23338 8.36842 8.52974 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.004599 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.242146 B = 6086.674785 C = 7578.441685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.474 4.474 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.367 4.367 13 C 0.391 3.609 14 N -0.731 5.731 15 C 0.138 3.862 16 C 0.056 3.944 17 O -0.396 6.396 18 C 0.051 3.949 19 H 0.111 0.889 20 C -0.151 4.151 21 C 0.038 3.962 22 O -0.409 6.409 23 C 0.018 3.982 24 N -0.568 5.568 25 H 0.275 0.725 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.391 0.609 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 -6.827 -1.386 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.506 4.506 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.368 4.368 11 C -0.054 4.054 12 C -0.393 4.393 13 C 0.151 3.849 14 N -0.366 5.366 15 C 0.014 3.986 16 C -0.020 4.020 17 O -0.316 6.316 18 C -0.007 4.007 19 H 0.129 0.871 20 C -0.189 4.189 21 C -0.038 4.038 22 O -0.328 6.328 23 C -0.059 4.059 24 N -0.291 5.291 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.224 0.776 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.910 -5.902 -1.561 17.979 hybrid contribution 0.667 0.063 0.155 0.687 sum -16.244 -5.840 -1.406 17.319 Atomic orbital electron populations 1.70266 1.08857 1.28646 1.29771 1.26991 0.95706 1.04453 0.92528 0.85220 0.78590 0.75493 0.80074 1.18363 1.19445 1.18133 1.19926 0.94625 0.90541 1.45505 0.89468 1.18696 0.87676 0.93260 0.87256 1.21696 0.98993 0.93797 1.22344 1.21017 0.93713 0.97181 0.93484 1.20956 0.95013 0.95994 1.27362 1.19037 0.86054 0.90399 0.89441 1.44290 1.01417 1.08284 1.82623 1.21381 0.89220 0.86412 1.01586 1.22893 0.94287 0.98073 0.86794 1.88094 1.26312 1.78228 1.38984 1.23739 0.83180 0.95680 0.98053 0.87136 1.23119 1.02650 0.98211 0.94887 1.23641 0.97079 0.89534 0.93561 1.89164 1.76859 1.44894 1.21920 1.24114 1.02577 0.91251 0.87924 1.68195 1.08052 1.26285 1.26553 0.91496 0.87925 0.85127 0.86136 0.77568 0.92740 0.90007 0.88196 0.92227 0.91174 0.86356 0.88952 0.89620 0.88859 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -43.19 11.46 21.84 0.25 -42.94 16 2 C 0.02 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.99 40.49 29.56 68.60 2.03 42.52 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.47 -27.49 9.14 23.46 0.21 -27.27 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.26 15.44 6.55 40.19 0.26 15.70 16 10 C -0.35 -18.36 9.83 22.87 0.22 -18.13 16 11 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 12 C -0.37 -17.15 9.34 22.73 0.21 -16.94 16 13 C 0.39 20.20 7.65 133.40 1.02 21.22 16 14 N -0.73 -31.05 5.67 -345.00 -1.96 -33.00 16 15 C 0.14 4.17 5.27 86.38 0.46 4.62 16 16 C 0.06 1.26 5.91 71.98 0.43 1.69 16 17 O -0.40 -10.92 9.92 -148.98 -1.48 -12.40 16 18 C 0.05 1.02 3.61 31.61 0.11 1.13 16 19 H 0.11 1.38 7.82 -2.39 -0.02 1.36 16 20 C -0.15 -2.65 6.90 31.61 0.22 -2.44 16 21 C 0.04 0.73 7.63 72.49 0.55 1.28 16 22 O -0.41 -11.78 11.65 -148.98 -1.74 -13.51 16 23 C 0.02 0.41 7.38 72.48 0.53 0.95 16 24 N -0.57 -33.81 7.89 -186.60 -1.47 -35.28 16 25 H 0.27 14.39 8.29 -92.71 -0.77 13.62 16 26 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 27 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 28 H 0.12 4.75 6.68 -2.91 -0.02 4.73 16 29 H 0.39 17.53 8.59 -92.71 -0.80 16.73 16 30 H 0.05 1.70 7.92 -2.38 -0.02 1.68 16 31 H 0.08 2.21 7.92 -2.38 -0.02 2.19 16 32 H 0.10 1.48 8.11 -2.39 -0.02 1.46 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.53 8.00 -2.39 -0.02 1.52 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 Total: -1.00 -75.00 328.40 0.82 -74.18 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.25 Total: 37.97 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.93 Total: -17.54 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.18 Total: -111.22 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -3.21 Total: -25.91 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -75.00 0.82 -74.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333866240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.270 kcal (2) G-P(sol) polarization free energy of solvation -74.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds