Wall clock time and date at job start Tue Mar 31 2020 00:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86806 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47364 * 274.98481 * 3 2 1 5 5 H 1.48503 * 109.46912 * 34.98753 * 3 2 1 6 6 H 1.48507 * 109.46742 * 154.98336 * 3 2 1 7 7 C 1.40023 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 186.28960 * 7 2 1 9 9 C 1.41315 * 120.00179 * 6.28893 * 7 2 1 10 10 C 1.40593 * 119.78339 * 173.66042 * 9 7 2 11 11 C 1.38350 * 119.14438 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.68044 * 359.74682 * 11 10 9 13 13 C 1.39758 * 119.49183 * 0.49735 * 12 11 10 14 14 N 1.38831 * 119.58443 * 179.76680 * 13 12 11 15 15 C 1.46497 * 119.99697 * 359.72873 * 14 13 12 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47115 * 65.00199 * 16 15 14 18 18 C 1.42896 * 114.00336 * 180.02562 * 17 16 15 19 19 H 1.09006 * 110.45365 * 27.39735 * 18 17 16 20 20 C 1.54508 * 110.51439 * 149.99596 * 18 17 16 21 21 C 1.54479 * 104.06056 * 118.64676 * 20 18 17 22 22 O 1.44421 * 104.80445 * 23.98141 * 21 20 18 23 23 C 1.44425 * 105.27737 * 319.48818 * 22 21 20 24 24 N 1.31971 * 120.83213 * 359.49542 * 13 12 11 25 25 H 0.96999 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.42461 * 0.04609 * 10 9 7 27 27 H 1.07996 * 120.65809 * 179.97438 * 11 10 9 28 28 H 1.08006 * 120.25442 * 180.27440 * 12 11 10 29 29 H 0.96998 * 119.99911 * 179.45568 * 14 13 12 30 30 H 1.08997 * 109.47684 * 299.99633 * 15 14 13 31 31 H 1.09005 * 109.47618 * 60.00168 * 15 14 13 32 32 H 1.08997 * 109.47319 * 185.00128 * 16 15 14 33 33 H 1.09001 * 109.47048 * 305.00295 * 16 15 14 34 34 H 1.08992 * 110.51611 * 237.29400 * 20 18 17 35 35 H 1.09000 * 110.50986 * 0.02562 * 20 18 17 36 36 H 1.09002 * 110.37158 * 142.81804 * 21 20 18 37 37 H 1.09004 * 110.37363 * 265.03645 * 21 20 18 38 38 H 1.09003 * 110.36987 * 281.68394 * 23 22 21 39 39 H 1.08988 * 110.37404 * 159.34098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1073 -1.3947 5 1 1.4956 2.6200 0.8028 6 1 3.5878 1.4120 0.5921 7 6 2.0075 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1019 9 6 1.3073 -2.4327 -0.1351 10 6 2.0212 -3.6365 -0.2694 11 6 1.3223 -4.8232 -0.4009 12 6 -0.0635 -4.7840 -0.3902 13 6 -0.7160 -3.5551 -0.2585 14 7 -2.1036 -3.5131 -0.2524 15 6 -2.8745 -4.7513 -0.3895 16 6 -4.3695 -4.4282 -0.3514 17 8 -4.7155 -3.6393 -1.4916 18 6 -6.0973 -3.2803 -1.5523 19 1 -6.5247 -3.2395 -0.5504 20 6 -6.2733 -1.9241 -2.2714 21 6 -7.1389 -2.2630 -3.5052 22 8 -7.8448 -3.4691 -3.1407 23 6 -6.8775 -4.2781 -2.4366 24 7 -0.0297 -2.4348 -0.1345 25 1 -0.4849 0.8401 0.0004 26 1 3.1011 -3.6348 -0.2696 27 1 1.8459 -5.7619 -0.5060 28 1 -0.6344 -5.6957 -0.4865 29 1 -2.5627 -2.6644 -0.1534 30 1 -2.6297 -5.2286 -1.3384 31 1 -2.6279 -5.4256 0.4306 32 1 -4.9421 -5.3555 -0.3640 33 1 -4.5980 -3.8723 0.5579 34 1 -6.7898 -1.2137 -1.6260 35 1 -5.3063 -1.5277 -2.5810 36 1 -7.8442 -1.4568 -3.7070 37 1 -6.5067 -2.4397 -4.3754 38 1 -6.2051 -4.7657 -3.1424 39 1 -7.3820 -5.0198 -1.8175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333866241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:25 Heat of formation + Delta-G solvation = -51.133378 kcal Electronic energy + Delta-G solvation = -21073.007871 eV Core-core repulsion = 17787.746309 eV Total energy + Delta-G solvation = -3285.261562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79661 -38.29303 -37.38915 -34.92608 -33.24857 -31.57472 -30.46874 -29.75898 -28.74570 -27.34794 -25.30162 -23.20223 -22.58165 -21.38105 -21.25831 -20.28036 -17.48205 -17.26610 -16.75535 -16.29206 -15.84050 -15.22605 -15.02002 -14.82977 -14.55254 -14.11401 -13.67309 -13.39706 -13.30751 -12.99581 -12.74006 -12.33837 -12.02955 -11.94653 -11.70478 -11.40063 -11.23315 -11.13380 -10.95917 -10.84909 -10.56855 -10.41054 -10.11037 -9.89356 -9.60484 -9.44122 -8.85140 -7.87109 -7.46400 -6.46064 -6.30082 -4.43811 2.90313 3.13050 3.16703 3.27015 3.32868 3.38837 3.89100 4.01074 4.22004 4.36760 4.57912 4.73464 4.87339 5.00345 5.02794 5.14713 5.25765 5.36285 5.46594 5.51584 5.52284 5.69218 5.82170 5.87075 6.02351 6.14520 6.19074 6.47848 6.60282 6.89745 6.92624 6.97542 7.13655 7.28719 7.63585 7.84989 7.95313 8.21396 8.40687 8.74021 8.84329 9.16340 10.28602 10.44338 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.004041 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.711650 B = 6927.664625 C = 8255.584083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.083 0.917 9 C 0.293 3.707 10 C -0.317 4.317 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.412 3.588 14 N -0.734 5.734 15 C 0.145 3.855 16 C 0.051 3.949 17 O -0.364 6.364 18 C 0.056 3.944 19 H 0.076 0.924 20 C -0.157 4.157 21 C 0.046 3.954 22 O -0.375 6.375 23 C 0.024 3.976 24 N -0.532 5.532 25 H 0.269 0.731 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -4.338 -2.245 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.340 4.340 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.371 5.371 15 C 0.019 3.981 16 C -0.026 4.026 17 O -0.283 6.283 18 C -0.003 4.003 19 H 0.094 0.906 20 C -0.195 4.195 21 C -0.031 4.031 22 O -0.294 6.294 23 C -0.053 4.053 24 N -0.253 5.253 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.758 -3.617 -2.359 14.420 hybrid contribution 0.697 0.103 0.163 0.723 sum -13.062 -3.514 -2.196 13.703 Atomic orbital electron populations 1.70164 1.07144 1.27248 1.29221 1.26041 0.94823 1.00868 0.93557 0.86378 0.80604 0.81209 0.78951 1.19588 1.20275 1.18572 1.19579 0.94546 0.89558 1.43169 0.89904 1.18206 0.86881 0.91775 0.86549 1.21538 0.98410 0.93861 1.20191 1.20590 0.93464 0.96321 0.95283 1.20598 0.94596 0.95844 1.28392 1.18522 0.84288 0.90281 0.89734 1.44030 1.02681 1.07611 1.82818 1.21073 0.87455 0.88419 1.01202 1.22892 0.96303 0.94807 0.88614 1.88088 1.23588 1.71551 1.45080 1.23462 0.83203 0.94244 0.99390 0.90622 1.23036 1.02254 0.96621 0.97563 1.23421 0.95291 0.87644 0.96740 1.89116 1.34249 1.30469 1.75589 1.23953 0.91699 0.94362 0.95311 1.68209 1.07868 1.24197 1.25077 0.92014 0.88738 0.88981 0.89276 0.76740 0.92237 0.91593 0.92242 0.92511 0.89827 0.88568 0.88904 0.91832 0.91033 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.31 11.49 55.55 0.64 -18.67 16 2 C 0.07 1.87 5.49 -17.35 -0.10 1.78 16 3 Si 0.90 18.95 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.44 -12.02 9.13 -37.74 -0.34 -12.36 16 8 H 0.08 2.14 7.86 -52.48 -0.41 1.73 16 9 C 0.29 8.31 6.54 -85.00 -0.56 7.76 16 10 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.37 -8.63 9.34 -38.87 -0.36 -9.00 16 13 C 0.41 10.26 7.65 -155.32 -1.19 9.07 16 14 N -0.73 -15.01 5.67 -60.40 -0.34 -15.35 16 15 C 0.14 2.23 5.27 -4.04 -0.02 2.21 16 16 C 0.05 0.61 5.91 37.16 0.22 0.83 16 17 O -0.36 -4.97 9.92 -35.23 -0.35 -5.32 16 18 C 0.06 0.61 3.61 -25.16 -0.09 0.52 16 19 H 0.08 0.73 7.82 -51.93 -0.41 0.33 16 20 C -0.16 -1.66 6.90 -25.16 -0.17 -1.83 16 21 C 0.05 0.45 7.63 37.93 0.29 0.74 16 22 O -0.38 -4.41 11.65 -35.23 -0.41 -4.82 16 23 C 0.02 0.25 7.38 37.93 0.28 0.53 16 24 N -0.53 -14.99 7.92 -10.33 -0.08 -15.07 16 25 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 26 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.84 6.68 -52.48 -0.35 1.49 16 29 H 0.40 8.29 8.59 -40.82 -0.35 7.94 16 30 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 31 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.14 8.00 -51.93 -0.42 0.73 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.09 0.79 8.14 -51.94 -0.42 0.36 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -31.40 328.45 -9.14 -40.53 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.69 Total: 9.29 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.82 Total: -9.46 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.21 Total: -49.09 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.76 Total: -10.15 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.40 -9.14 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333866241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.599 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds