Wall clock time and date at job start Tue Mar 31 2020 00:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86806 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47364 * 274.98481 * 3 2 1 5 5 H 1.48503 * 109.46912 * 34.98753 * 3 2 1 6 6 H 1.48507 * 109.46742 * 154.98336 * 3 2 1 7 7 C 1.40023 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99547 * 186.28960 * 7 2 1 9 9 C 1.41315 * 120.00179 * 6.28893 * 7 2 1 10 10 C 1.40593 * 119.78339 * 173.66042 * 9 7 2 11 11 C 1.38350 * 119.14438 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.68044 * 359.74682 * 11 10 9 13 13 C 1.39758 * 119.49183 * 0.49735 * 12 11 10 14 14 N 1.38831 * 119.58443 * 179.76680 * 13 12 11 15 15 C 1.46497 * 119.99697 * 359.72873 * 14 13 12 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47115 * 65.00199 * 16 15 14 18 18 C 1.42896 * 114.00336 * 180.02562 * 17 16 15 19 19 H 1.09006 * 110.45365 * 27.39735 * 18 17 16 20 20 C 1.54508 * 110.51439 * 149.99596 * 18 17 16 21 21 C 1.54479 * 104.06056 * 118.64676 * 20 18 17 22 22 O 1.44421 * 104.80445 * 23.98141 * 21 20 18 23 23 C 1.44425 * 105.27737 * 319.48818 * 22 21 20 24 24 N 1.31971 * 120.83213 * 359.49542 * 13 12 11 25 25 H 0.96999 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.42461 * 0.04609 * 10 9 7 27 27 H 1.07996 * 120.65809 * 179.97438 * 11 10 9 28 28 H 1.08006 * 120.25442 * 180.27440 * 12 11 10 29 29 H 0.96998 * 119.99911 * 179.45568 * 14 13 12 30 30 H 1.08997 * 109.47684 * 299.99633 * 15 14 13 31 31 H 1.09005 * 109.47618 * 60.00168 * 15 14 13 32 32 H 1.08997 * 109.47319 * 185.00128 * 16 15 14 33 33 H 1.09001 * 109.47048 * 305.00295 * 16 15 14 34 34 H 1.08992 * 110.51611 * 237.29400 * 20 18 17 35 35 H 1.09000 * 110.50986 * 0.02562 * 20 18 17 36 36 H 1.09002 * 110.37158 * 142.81804 * 21 20 18 37 37 H 1.09004 * 110.37363 * 265.03645 * 21 20 18 38 38 H 1.09003 * 110.36987 * 281.68394 * 23 22 21 39 39 H 1.08988 * 110.37404 * 159.34098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1073 -1.3947 5 1 1.4956 2.6200 0.8028 6 1 3.5878 1.4120 0.5921 7 6 2.0075 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1019 9 6 1.3073 -2.4327 -0.1351 10 6 2.0212 -3.6365 -0.2694 11 6 1.3223 -4.8232 -0.4009 12 6 -0.0635 -4.7840 -0.3902 13 6 -0.7160 -3.5551 -0.2585 14 7 -2.1036 -3.5131 -0.2524 15 6 -2.8745 -4.7513 -0.3895 16 6 -4.3695 -4.4282 -0.3514 17 8 -4.7155 -3.6393 -1.4916 18 6 -6.0973 -3.2803 -1.5523 19 1 -6.5247 -3.2395 -0.5504 20 6 -6.2733 -1.9241 -2.2714 21 6 -7.1389 -2.2630 -3.5052 22 8 -7.8448 -3.4691 -3.1407 23 6 -6.8775 -4.2781 -2.4366 24 7 -0.0297 -2.4348 -0.1345 25 1 -0.4849 0.8401 0.0004 26 1 3.1011 -3.6348 -0.2696 27 1 1.8459 -5.7619 -0.5060 28 1 -0.6344 -5.6957 -0.4865 29 1 -2.5627 -2.6644 -0.1534 30 1 -2.6297 -5.2286 -1.3384 31 1 -2.6279 -5.4256 0.4306 32 1 -4.9421 -5.3555 -0.3640 33 1 -4.5980 -3.8723 0.5579 34 1 -6.7898 -1.2137 -1.6260 35 1 -5.3063 -1.5277 -2.5810 36 1 -7.8442 -1.4568 -3.7070 37 1 -6.5067 -2.4397 -4.3754 38 1 -6.2051 -4.7657 -3.1424 39 1 -7.3820 -5.0198 -1.8175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333866241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:24 Heat of formation + Delta-G solvation = -72.002173 kcal Electronic energy + Delta-G solvation = -21073.912810 eV Core-core repulsion = 17787.746309 eV Total energy + Delta-G solvation = -3286.166501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67172 -40.08781 -38.46583 -36.50148 -35.09235 -32.67846 -32.21196 -31.30325 -29.72171 -28.78720 -27.22612 -24.16842 -23.80253 -23.14311 -22.16624 -22.04045 -19.27517 -18.30703 -18.11397 -17.49177 -16.89277 -16.56337 -16.40369 -16.10636 -16.02142 -15.63157 -15.06017 -14.87702 -14.66511 -14.35555 -13.98348 -13.70033 -13.62761 -13.18706 -12.87910 -12.72893 -12.68759 -12.55685 -12.28809 -12.24344 -12.11715 -11.73920 -11.68067 -11.27511 -10.94005 -10.65347 -10.50719 -9.82013 -9.42583 -8.26264 -8.22602 -6.46917 1.07278 1.36052 1.41488 1.55658 1.58630 2.25675 2.47221 2.71258 2.93388 3.08796 3.54184 3.77387 3.93529 4.01104 4.05669 4.22869 4.24964 4.29647 4.38986 4.46176 4.66093 4.67799 4.71589 4.77505 4.80631 4.88036 4.92903 4.99069 5.01203 5.01950 5.14989 5.38056 5.65876 5.73146 5.97892 6.08326 6.23757 6.24739 6.58279 6.85160 6.96927 7.23759 8.36251 8.52663 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.004041 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.711650 B = 6927.664625 C = 8255.584083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.474 4.474 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.367 4.367 13 C 0.392 3.608 14 N -0.730 5.730 15 C 0.139 3.861 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.052 3.948 19 H 0.092 0.908 20 C -0.159 4.159 21 C 0.045 3.955 22 O -0.390 6.390 23 C 0.025 3.975 24 N -0.567 5.567 25 H 0.275 0.725 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.392 0.608 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 -4.903 -2.052 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.506 4.506 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.368 4.368 11 C -0.054 4.054 12 C -0.393 4.393 13 C 0.152 3.848 14 N -0.366 5.366 15 C 0.015 3.985 16 C -0.020 4.020 17 O -0.311 6.311 18 C -0.006 4.006 19 H 0.110 0.890 20 C -0.197 4.197 21 C -0.031 4.031 22 O -0.309 6.309 23 C -0.052 4.052 24 N -0.290 5.290 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.148 0.852 28 H 0.138 0.862 29 H 0.226 0.774 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.774 -4.228 -2.168 15.519 hybrid contribution 0.908 0.146 0.080 0.923 sum -13.866 -4.081 -2.088 14.604 Atomic orbital electron populations 1.70261 1.08808 1.28619 1.29825 1.26956 0.95705 1.04337 0.92485 0.85158 0.79169 0.75956 0.79128 1.19062 1.19194 1.17888 1.19939 0.94996 0.90708 1.44976 0.89600 1.18689 0.87657 0.93140 0.87336 1.21703 0.98995 0.94222 1.21914 1.21019 0.93791 0.97095 0.93535 1.20965 0.94956 0.96469 1.26926 1.19017 0.86056 0.90346 0.89425 1.44258 1.01360 1.09244 1.81692 1.21366 0.89128 0.86589 1.01456 1.22894 0.94222 0.96440 0.88444 1.88052 1.25244 1.72093 1.45737 1.23618 0.82114 0.94419 1.00436 0.88964 1.23066 1.01504 0.96954 0.98177 1.23510 0.95590 0.87775 0.96268 1.89100 1.34933 1.31086 1.75824 1.24007 0.91536 0.94413 0.95199 1.68181 1.08212 1.26061 1.26552 0.91407 0.87989 0.85224 0.86171 0.77371 0.92635 0.90060 0.88615 0.91911 0.88487 0.90544 0.86996 0.92195 0.91846 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.68 11.49 21.84 0.25 -41.43 16 2 C 0.03 1.41 5.49 85.29 0.47 1.88 16 3 Si 0.99 39.35 29.56 68.60 2.03 41.38 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.47 -26.94 9.13 23.46 0.21 -26.73 16 8 H 0.09 4.59 7.86 -2.91 -0.02 4.57 16 9 C 0.26 15.16 6.54 40.19 0.26 15.42 16 10 C -0.35 -18.06 9.83 22.87 0.22 -17.83 16 11 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 12 C -0.37 -16.78 9.34 22.73 0.21 -16.56 16 13 C 0.39 19.66 7.65 133.40 1.02 20.68 16 14 N -0.73 -29.69 5.67 -345.00 -1.96 -31.64 16 15 C 0.14 4.03 5.27 86.38 0.46 4.49 16 16 C 0.06 1.23 5.91 71.98 0.43 1.66 16 17 O -0.39 -10.20 9.92 -148.98 -1.48 -11.68 16 18 C 0.05 1.06 3.61 31.61 0.11 1.18 16 19 H 0.09 1.56 7.82 -2.38 -0.02 1.54 16 20 C -0.16 -3.24 6.90 31.61 0.22 -3.02 16 21 C 0.04 0.85 7.63 72.48 0.55 1.40 16 22 O -0.39 -8.56 11.65 -148.98 -1.74 -10.30 16 23 C 0.03 0.48 7.38 72.48 0.53 1.02 16 24 N -0.57 -32.85 7.92 -186.59 -1.48 -34.32 16 25 H 0.28 13.76 8.29 -92.71 -0.77 12.99 16 26 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.12 4.63 6.68 -2.91 -0.02 4.61 16 29 H 0.39 16.58 8.59 -92.71 -0.80 15.79 16 30 H 0.06 1.67 7.93 -2.39 -0.02 1.65 16 31 H 0.08 2.13 7.91 -2.38 -0.02 2.11 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.85 8.00 -2.39 -0.02 1.83 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.65 328.45 0.82 -68.84 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.25 Total: 36.75 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.93 Total: -17.59 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.18 Total: -107.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -3.21 Total: -21.98 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -69.65 0.82 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333866241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.165 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds