Wall clock time and date at job start Mon Mar 30 2020 23:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46908 * 109.47060 * 2 1 4 4 C 1.46894 * 110.99755 * 200.21619 * 3 2 1 5 5 C 1.50696 * 109.47664 * 66.04475 * 4 3 2 6 6 H 1.08005 * 119.99889 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00334 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00435 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47356 * 89.99564 * 9 7 5 11 11 H 1.48499 * 109.47451 * 209.99832 * 9 7 5 12 12 H 1.48500 * 109.46983 * 329.99655 * 9 7 5 13 13 C 1.38376 * 110.99911 * 76.25715 * 3 2 1 14 14 N 1.31469 * 126.43845 * 68.06201 * 13 3 2 15 15 N 1.28420 * 110.51106 * 180.25522 * 14 13 3 16 16 N 1.28914 * 110.31565 * 359.75172 * 15 14 13 17 17 N 1.35310 * 126.43692 * 247.88788 * 13 3 2 18 18 C 1.46498 * 127.38559 * 0.02562 * 17 13 3 19 19 C 1.50693 * 109.47150 * 264.66550 * 18 17 13 20 20 C 1.41379 * 126.80170 * 125.00085 * 19 18 17 21 21 C 1.35456 * 103.98530 * 180.02562 * 20 19 18 22 22 O 1.34045 * 106.44693 * 359.97438 * 21 20 19 23 23 N 1.20917 * 111.56443 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46953 * 294.83399 * 1 2 3 25 25 H 1.09002 * 109.47209 * 54.83623 * 1 2 3 26 26 H 1.09002 * 109.46811 * 174.83621 * 1 2 3 27 27 H 1.08994 * 109.46817 * 240.00313 * 2 1 3 28 28 H 1.08997 * 109.47262 * 119.99585 * 2 1 3 29 29 H 1.09005 * 109.46921 * 186.04863 * 4 3 2 30 30 H 1.09002 * 109.47303 * 306.04052 * 4 3 2 31 31 H 0.96996 * 120.00745 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47207 * 144.65998 * 18 17 13 33 33 H 1.09002 * 109.47071 * 24.66491 * 18 17 13 34 34 H 1.08000 * 128.01108 * 0.04712 * 20 19 18 35 35 H 1.08002 * 126.77377 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4085 1.4524 -0.4739 5 6 3.4639 1.0525 -1.9258 6 1 2.5580 0.7756 -2.4446 7 6 4.6709 1.0402 -2.5919 8 7 4.7194 0.6908 -3.8588 9 14 6.2379 1.5184 -1.6945 10 1 6.8462 0.3100 -1.0821 11 1 7.1953 2.1209 -2.6566 12 1 5.9181 2.5045 -0.6313 13 6 1.8957 1.9549 1.2549 14 7 2.5695 1.6222 2.3336 15 7 2.2071 2.3451 3.3313 16 7 1.2954 3.1818 2.9700 17 7 1.0604 2.9614 1.6015 18 6 0.1102 3.6662 0.7374 19 6 0.7477 4.9269 0.2130 20 6 0.8828 5.3072 -1.1420 21 6 1.5150 6.5038 -1.0846 22 8 1.7145 6.7657 0.2148 23 7 1.2823 5.8819 0.9178 24 1 -0.3633 0.4316 0.9326 25 1 -0.3634 0.5919 -0.8401 26 1 -0.3633 -1.0235 -0.0925 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7813 2.4707 -0.3629 30 1 4.0263 0.7733 0.1138 31 1 5.5686 0.6817 -4.3274 32 1 -0.7817 3.9209 1.3100 33 1 -0.1661 3.0238 -0.0987 34 1 0.5570 4.7687 -2.0196 35 1 1.8011 7.1247 -1.9207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340358420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:46 Heat of formation + Delta-G solvation = 176.682772 kcal Electronic energy + Delta-G solvation = -22057.697433 eV Core-core repulsion = 18711.067128 eV Total energy + Delta-G solvation = -3346.630305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.02912 -44.15839 -39.17900 -37.15359 -34.87534 -34.49727 -32.90788 -32.65667 -31.93428 -29.76318 -28.72102 -24.74304 -24.55842 -24.18319 -24.10188 -22.42347 -21.57082 -19.31413 -19.03184 -18.77377 -18.11624 -17.87473 -17.28516 -16.62587 -16.02465 -15.84244 -15.55130 -14.96138 -14.64213 -14.54739 -14.50896 -14.25026 -13.98820 -13.41051 -13.15931 -12.94634 -12.86846 -12.50672 -12.42908 -12.30746 -12.11464 -11.90838 -11.78358 -11.59018 -11.29293 -11.22176 -10.84996 -10.62526 -9.98100 -8.34019 -6.37102 -0.25389 0.30259 0.69749 1.03707 1.28437 1.30599 1.34092 1.40278 2.27296 2.36927 2.50395 2.95735 2.99287 3.10080 3.43933 3.74298 3.97538 4.04726 4.18905 4.27272 4.29670 4.41142 4.43119 4.47086 4.64130 4.69272 4.74395 4.88883 4.96739 5.05102 5.09217 5.27796 5.32913 5.59064 5.91735 6.32334 6.68583 7.20650 7.24878 7.27829 8.80100 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.007597 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.435571 B = 3684.649468 C = 4557.418082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 N -0.451 5.451 4 C 0.191 3.809 5 C -0.508 4.508 6 H 0.071 0.929 7 C 0.037 3.963 8 N -0.925 5.925 9 Si 0.917 3.083 10 H -0.268 1.268 11 H -0.274 1.274 12 H -0.273 1.273 13 C 0.433 3.567 14 N -0.383 5.383 15 N -0.060 5.060 16 N -0.082 5.082 17 N -0.356 5.356 18 C 0.206 3.794 19 C -0.029 4.029 20 C -0.216 4.216 21 C -0.047 4.047 22 O 0.095 5.905 23 N -0.383 5.383 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.000 1.000 31 H 0.270 0.730 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.199 0.801 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 7.678 2.504 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 N -0.179 5.179 4 C 0.065 3.935 5 C -0.546 4.546 6 H 0.089 0.911 7 C -0.164 4.164 8 N -0.565 5.565 9 Si 0.743 3.257 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.198 1.198 13 C 0.067 3.933 14 N -0.240 5.240 15 N -0.056 5.056 16 N -0.069 5.069 17 N -0.155 5.155 18 C 0.085 3.915 19 C -0.188 4.188 20 C -0.238 4.238 21 C -0.127 4.127 22 O 0.026 5.974 23 N -0.086 5.086 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.216 0.784 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -11.303 8.225 4.706 14.750 hybrid contribution 1.101 -0.388 -0.948 1.504 sum -10.202 7.838 3.758 13.402 Atomic orbital electron populations 1.21794 0.92243 1.03784 1.01786 1.22369 0.97637 0.84335 1.02732 1.59346 1.25173 1.21556 1.11807 1.19951 0.82024 0.95797 0.95761 1.20884 0.95241 1.45422 0.93083 0.91080 1.25342 1.01124 0.94703 0.95183 1.69931 1.27329 1.48901 1.10323 0.86181 0.81182 0.79393 0.78964 1.19322 1.19949 1.19793 1.23496 0.88103 0.89102 0.92607 1.74890 1.26194 1.25454 0.97429 1.77867 1.05907 1.01075 1.20724 1.82468 1.15793 1.19268 0.89371 1.51635 1.30155 1.25164 1.08592 1.20569 0.88675 0.87956 0.94283 1.23837 1.04336 0.97735 0.92889 1.23108 1.05485 0.98046 0.97185 1.26937 0.99437 0.99067 0.87270 1.84799 1.58657 1.37013 1.16915 1.73919 1.14066 0.99871 1.20722 0.94009 0.90417 0.89499 0.88337 0.94244 0.97009 0.98253 0.92027 0.83736 0.82565 0.78356 0.72054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.96 71.98 0.72 -2.62 16 2 C 0.06 1.85 5.51 86.30 0.48 2.32 16 3 N -0.45 -17.08 4.40 -711.45 -3.13 -20.21 16 4 C 0.19 8.78 3.64 85.56 0.31 9.09 16 5 C -0.51 -25.92 8.78 25.60 0.22 -25.69 16 6 H 0.07 3.82 7.56 -2.91 -0.02 3.80 16 7 C 0.04 1.97 5.47 84.65 0.46 2.43 16 8 N -0.93 -52.26 13.96 21.44 0.30 -51.96 16 9 Si 0.92 42.59 27.47 68.60 1.88 44.47 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -12.80 6.54 99.48 0.65 -12.15 16 13 C 0.43 16.39 5.88 260.65 1.53 17.92 16 14 N -0.38 -16.12 11.98 -58.70 -0.70 -16.82 16 15 N -0.06 -2.44 13.38 37.02 0.50 -1.94 16 16 N -0.08 -3.04 13.93 37.02 0.52 -2.53 16 17 N -0.36 -11.77 3.67 -353.38 -1.30 -13.07 16 18 C 0.21 4.91 7.10 85.63 0.61 5.52 16 19 C -0.03 -0.78 6.91 43.57 0.30 -0.48 16 20 C -0.22 -4.59 11.12 22.40 0.25 -4.34 16 21 C -0.05 -0.86 12.30 67.18 0.83 -0.03 16 22 O 0.10 2.48 11.20 71.59 0.80 3.28 16 23 N -0.38 -11.74 12.07 -49.55 -0.60 -12.34 16 24 H 0.04 0.98 7.86 -2.39 -0.02 0.96 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.10 3.60 6.58 -2.39 -0.02 3.58 16 28 H 0.04 1.36 7.88 -2.39 -0.02 1.34 16 29 H 0.01 0.59 7.11 -2.38 -0.02 0.57 16 30 H 0.00 -0.02 7.55 -2.39 -0.02 -0.04 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.16 3.00 8.09 -2.39 -0.02 2.99 16 34 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.26 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.16 310.96 5.03 -64.12 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.06 Total: 2.85 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.71 Total: 4.14 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -4.42 Total: -118.87 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.80 Total: 3.28 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -69.16 5.03 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340358420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.806 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds