Wall clock time and date at job start Tue Mar 31 2020 00:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48499 * 109.46955 * 240.00166 * 3 2 1 5 5 H 1.48504 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47324 * 119.99636 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47775 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47416 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00128 * 179.97438 * 11 10 9 14 14 C 1.45642 * 119.36658 * 359.97303 * 13 11 10 15 15 C 1.51525 * 111.08561 * 131.95912 * 14 13 11 16 16 C 1.50219 * 113.26982 * 37.24065 * 15 14 13 17 17 C 1.31208 * 123.68159 * 342.75060 * 16 15 14 18 18 C 1.51555 * 119.86353 * 181.06163 * 17 16 15 19 19 C 1.52907 * 109.47872 * 322.33080 * 18 17 16 20 20 C 1.50857 * 108.42301 * 50.10938 * 19 18 17 21 21 O 1.21288 * 120.27078 * 147.52547 * 20 19 18 22 22 N 1.34307 * 119.44124 * 327.57939 * 20 19 18 23 23 C 1.45343 * 119.36978 * 179.97438 * 13 11 10 24 24 H 0.96997 * 120.00452 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47512 * 59.99254 * 9 7 2 26 26 H 1.09010 * 109.47016 * 299.99773 * 9 7 2 27 27 H 1.08994 * 109.46985 * 59.99139 * 10 9 7 28 28 H 1.09002 * 109.46479 * 300.00251 * 10 9 7 29 29 H 1.08994 * 109.15804 * 252.37578 * 14 13 11 30 30 H 1.08998 * 109.15491 * 11.55308 * 14 13 11 31 31 H 1.09006 * 108.72314 * 158.21392 * 15 14 13 32 32 H 1.08993 * 108.72731 * 276.25680 * 15 14 13 33 33 H 1.08998 * 109.46703 * 202.33224 * 18 17 16 34 34 H 1.08995 * 109.46877 * 82.33893 * 18 17 16 35 35 H 1.09002 * 109.68046 * 169.85421 * 19 18 17 36 36 H 1.08999 * 109.68084 * 290.36872 * 19 18 17 37 37 H 0.96997 * 119.26502 * 176.05628 * 22 20 19 38 38 H 1.09003 * 109.02454 * 91.94486 * 23 13 11 39 39 H 1.08997 * 108.96569 * 333.07207 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4920 -4.9671 0.0012 12 8 0.2793 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0016 14 6 3.6222 -6.1181 0.0021 15 6 4.1775 -7.0571 1.0537 16 6 3.3798 -8.3215 1.2010 17 6 2.1550 -8.4655 0.7532 18 6 1.4208 -9.7734 0.9706 19 6 2.4000 -10.9385 0.8225 20 6 3.6095 -10.6565 1.6788 21 8 4.2145 -11.5685 2.2016 22 7 4.0100 -9.3871 1.8581 23 6 1.4254 -7.3849 0.0015 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8714 -3.6038 0.8922 28 1 2.8728 -3.6046 -0.8877 29 1 3.9837 -6.4260 -0.9790 30 1 3.9686 -5.1054 0.2082 31 1 5.2009 -7.3185 0.7842 32 1 4.1924 -6.5391 2.0126 33 1 0.6257 -9.8709 0.2315 34 1 0.9898 -9.7860 1.9716 35 1 1.9241 -11.8621 1.1520 36 1 2.7026 -11.0333 -0.2204 37 1 4.7524 -9.2040 2.4550 38 1 1.2748 -7.7087 -1.0284 39 1 0.4540 -7.2215 0.4680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347816856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:07 Heat of formation + Delta-G solvation = -70.813500 kcal Electronic energy + Delta-G solvation = -21339.823805 eV Core-core repulsion = 18053.708849 eV Total energy + Delta-G solvation = -3286.114956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15741 -39.73892 -37.77872 -35.58548 -34.11776 -33.50863 -31.58922 -31.21410 -30.20781 -26.39905 -25.04408 -24.66492 -23.78611 -21.81574 -20.89693 -18.71648 -18.29691 -17.28687 -17.12018 -16.43092 -16.37342 -15.63730 -15.43925 -15.36932 -14.46384 -14.40425 -14.25795 -13.74665 -13.61027 -13.27664 -13.10921 -12.76246 -12.60174 -12.19755 -12.02591 -11.79730 -11.70062 -11.39721 -11.13105 -10.93855 -10.83162 -10.63131 -10.23582 -9.99827 -9.65434 -9.24156 -9.06282 -8.63027 -8.34793 -8.27715 -5.98565 -4.03385 1.40832 2.47294 2.75343 3.09548 3.19774 3.32379 3.37613 3.38911 3.99644 4.18238 4.44383 4.49526 4.69661 4.74649 4.82190 4.95763 5.07784 5.09754 5.36386 5.37718 5.40157 5.46448 5.49090 5.54336 5.70241 5.72263 5.75924 6.11288 6.13410 6.14998 6.49199 6.69349 6.83242 6.94819 7.60503 7.70878 7.71530 7.82333 8.03915 8.34597 8.64281 9.04729 9.60360 11.12323 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041907 B = 0.003237 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.988922 B = 8649.095979 C = 9134.676016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.528 6.528 13 N -0.622 5.622 14 C 0.116 3.884 15 C -0.100 4.100 16 C 0.112 3.888 17 C -0.181 4.181 18 C -0.076 4.076 19 C -0.139 4.139 20 C 0.521 3.479 21 O -0.537 6.537 22 N -0.669 5.669 23 C 0.168 3.832 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.069 0.931 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.121 -19.269 0.640 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.403 6.403 13 N -0.358 5.358 14 C -0.008 4.008 15 C -0.139 4.139 16 C 0.018 3.982 17 C -0.186 4.186 18 C -0.114 4.114 19 C -0.178 4.178 20 C 0.309 3.691 21 O -0.413 6.413 22 N -0.313 5.313 23 C 0.044 3.956 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.242 0.758 38 H 0.087 0.913 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.479 -19.727 0.805 21.113 hybrid contribution 0.929 0.958 0.277 1.363 sum 8.408 -18.769 1.083 20.595 Atomic orbital electron populations 1.69979 1.06064 1.26750 1.49986 1.25017 0.94820 0.99220 0.95263 0.86657 0.79557 0.83198 0.78541 1.20239 1.21285 1.20247 1.21168 0.92865 0.90999 1.51666 0.92654 1.18908 0.93164 0.89325 0.98664 1.21907 1.00803 0.91850 1.02339 1.21649 0.88497 0.85394 0.74289 1.90670 1.14365 1.87146 1.48099 1.47505 1.06254 1.06000 1.76016 1.21018 0.80478 1.01089 0.98195 1.20522 0.99108 0.92500 1.01730 1.18893 0.92600 0.88853 0.97876 1.21249 0.93890 0.98062 1.05408 1.20522 0.97490 0.89807 1.03584 1.21805 0.94027 1.00758 1.01257 1.20798 0.85671 0.81714 0.80886 1.90774 1.57226 1.43743 1.49564 1.43790 1.35795 1.05760 1.45921 1.19666 0.95470 0.81498 0.98938 0.92853 0.95777 0.95823 0.90137 0.90099 0.91575 0.87917 0.89200 0.89449 0.89160 0.90131 0.87480 0.87913 0.75755 0.91286 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.59 9.11 -34.45 -0.31 -14.90 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 10 C -0.13 -2.47 3.95 -27.89 -0.11 -2.58 16 11 C 0.51 9.36 7.64 -10.99 -0.08 9.28 16 12 O -0.53 -11.92 15.42 5.56 0.09 -11.83 16 13 N -0.62 -8.37 3.07 -177.69 -0.55 -8.91 16 14 C 0.12 1.13 6.30 -5.25 -0.03 1.10 16 15 C -0.10 -0.78 5.91 -28.86 -0.17 -0.95 16 16 C 0.11 1.01 6.53 -80.78 -0.53 0.49 16 17 C -0.18 -1.73 5.79 -100.80 -0.58 -2.32 16 18 C -0.08 -0.58 5.96 -27.51 -0.16 -0.74 16 19 C -0.14 -1.03 6.21 -27.85 -0.17 -1.20 16 20 C 0.52 5.37 7.75 -11.12 -0.09 5.28 16 21 O -0.54 -7.45 17.94 5.55 0.10 -7.36 16 22 N -0.67 -5.91 5.28 -8.48 -0.04 -5.95 16 23 C 0.17 1.98 5.95 -5.92 -0.04 1.94 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.68 8.10 -51.92 -0.42 0.25 16 27 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 28 H 0.08 1.40 7.97 -51.93 -0.41 0.98 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.98 5.74 -51.93 -0.30 0.68 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.55 8.00 -51.93 -0.42 0.14 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 3.06 8.78 -40.82 -0.36 2.70 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.31 7.22 -51.93 -0.38 0.93 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -35.33 321.16 -7.94 -43.27 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.59 Total: -1.83 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.50 Total: -2.19 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.15 Total: -41.12 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.19 Total: -19.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.33 -7.94 -43.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347816856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.546 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds