Wall clock time and date at job start Tue Mar 31 2020 00:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48499 * 109.46955 * 240.00166 * 3 2 1 5 5 H 1.48504 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47324 * 119.99636 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47775 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47416 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00128 * 179.97438 * 11 10 9 14 14 C 1.45642 * 119.36658 * 359.97303 * 13 11 10 15 15 C 1.51525 * 111.08561 * 131.95912 * 14 13 11 16 16 C 1.50219 * 113.26982 * 37.24065 * 15 14 13 17 17 C 1.31208 * 123.68159 * 342.75060 * 16 15 14 18 18 C 1.51555 * 119.86353 * 181.06163 * 17 16 15 19 19 C 1.52907 * 109.47872 * 322.33080 * 18 17 16 20 20 C 1.50857 * 108.42301 * 50.10938 * 19 18 17 21 21 O 1.21288 * 120.27078 * 147.52547 * 20 19 18 22 22 N 1.34307 * 119.44124 * 327.57939 * 20 19 18 23 23 C 1.45343 * 119.36978 * 179.97438 * 13 11 10 24 24 H 0.96997 * 120.00452 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47512 * 59.99254 * 9 7 2 26 26 H 1.09010 * 109.47016 * 299.99773 * 9 7 2 27 27 H 1.08994 * 109.46985 * 59.99139 * 10 9 7 28 28 H 1.09002 * 109.46479 * 300.00251 * 10 9 7 29 29 H 1.08994 * 109.15804 * 252.37578 * 14 13 11 30 30 H 1.08998 * 109.15491 * 11.55308 * 14 13 11 31 31 H 1.09006 * 108.72314 * 158.21392 * 15 14 13 32 32 H 1.08993 * 108.72731 * 276.25680 * 15 14 13 33 33 H 1.08998 * 109.46703 * 202.33224 * 18 17 16 34 34 H 1.08995 * 109.46877 * 82.33893 * 18 17 16 35 35 H 1.09002 * 109.68046 * 169.85421 * 19 18 17 36 36 H 1.08999 * 109.68084 * 290.36872 * 19 18 17 37 37 H 0.96997 * 119.26502 * 176.05628 * 22 20 19 38 38 H 1.09003 * 109.02454 * 91.94486 * 23 13 11 39 39 H 1.08997 * 108.96569 * 333.07207 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4920 -4.9671 0.0012 12 8 0.2793 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0016 14 6 3.6222 -6.1181 0.0021 15 6 4.1775 -7.0571 1.0537 16 6 3.3798 -8.3215 1.2010 17 6 2.1550 -8.4655 0.7532 18 6 1.4208 -9.7734 0.9706 19 6 2.4000 -10.9385 0.8225 20 6 3.6095 -10.6565 1.6788 21 8 4.2145 -11.5685 2.2016 22 7 4.0100 -9.3871 1.8581 23 6 1.4254 -7.3849 0.0015 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8714 -3.6038 0.8922 28 1 2.8728 -3.6046 -0.8877 29 1 3.9837 -6.4260 -0.9790 30 1 3.9686 -5.1054 0.2082 31 1 5.2009 -7.3185 0.7842 32 1 4.1924 -6.5391 2.0126 33 1 0.6257 -9.8709 0.2315 34 1 0.9898 -9.7860 1.9716 35 1 1.9241 -11.8621 1.1520 36 1 2.7026 -11.0333 -0.2204 37 1 4.7524 -9.2040 2.4550 38 1 1.2748 -7.7087 -1.0284 39 1 0.4540 -7.2215 0.4680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347816856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:06 Heat of formation + Delta-G solvation = -95.682940 kcal Electronic energy + Delta-G solvation = -21340.902225 eV Core-core repulsion = 18053.708849 eV Total energy + Delta-G solvation = -3287.193376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98753 -40.92659 -38.82654 -36.64744 -35.59964 -34.74929 -33.15262 -32.26495 -31.25651 -28.03298 -26.11326 -25.67133 -24.53948 -23.48457 -21.92685 -19.92509 -19.16343 -18.72169 -18.07012 -17.75008 -17.27274 -17.01743 -16.53927 -16.46352 -16.22163 -15.42548 -15.15340 -14.87609 -14.62356 -14.24541 -14.17664 -13.95071 -13.77091 -13.50487 -13.29269 -13.07693 -12.75270 -12.54346 -12.50258 -12.42917 -12.09819 -11.88223 -11.64356 -11.49089 -11.28682 -11.02724 -10.65523 -10.53142 -9.71552 -9.06452 -8.15164 -6.29034 0.64904 1.44605 1.48706 1.56264 1.68113 1.71560 1.98090 2.12561 2.45648 3.18120 3.29604 3.49928 3.75929 3.87474 4.03585 4.12165 4.27299 4.29109 4.39510 4.47153 4.54628 4.56783 4.65540 4.71321 4.80888 4.85677 4.88861 5.05036 5.08108 5.13046 5.37279 5.52251 5.66412 5.69233 5.78543 5.88611 6.18121 6.20278 6.38232 6.89850 6.96913 7.26625 7.41415 8.97313 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041907 B = 0.003237 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.988922 B = 8649.095979 C = 9134.676016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.510 3.490 12 O -0.585 6.585 13 N -0.609 5.609 14 C 0.106 3.894 15 C -0.097 4.097 16 C 0.116 3.884 17 C -0.190 4.190 18 C -0.073 4.073 19 C -0.132 4.132 20 C 0.517 3.483 21 O -0.577 6.577 22 N -0.661 5.661 23 C 0.168 3.832 24 H 0.262 0.738 25 H -0.018 1.018 26 H -0.019 1.019 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.021 -19.666 0.353 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.156 4.156 11 C 0.300 3.700 12 O -0.465 6.465 13 N -0.342 5.342 14 C -0.016 4.016 15 C -0.135 4.135 16 C 0.021 3.979 17 C -0.195 4.195 18 C -0.111 4.111 19 C -0.171 4.171 20 C 0.307 3.693 21 O -0.457 6.457 22 N -0.304 5.304 23 C 0.044 3.956 24 H 0.071 0.929 25 H 0.000 1.000 26 H -0.001 1.001 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.448 -20.153 0.517 22.706 hybrid contribution 0.034 1.031 0.361 1.093 sum 10.482 -19.122 0.879 21.824 Atomic orbital electron populations 1.70167 1.08341 1.27812 1.51551 1.26125 0.95673 1.03917 0.94738 0.85400 0.78053 0.77445 0.79507 1.18626 1.21639 1.18651 1.21698 0.94078 0.91521 1.50646 0.90346 1.18696 0.93743 0.92506 0.94635 1.21664 0.99312 0.89831 1.04797 1.21445 0.87693 0.86613 0.74240 1.90653 1.16657 1.88006 1.51183 1.47438 1.08001 1.05048 1.73716 1.21383 0.77741 1.02297 1.00225 1.20547 1.00217 0.91366 1.01403 1.19052 0.92561 0.89176 0.97075 1.21186 0.94276 0.98131 1.05890 1.20529 0.97743 0.88851 1.03930 1.21832 0.92709 1.01018 1.01571 1.21300 0.85950 0.81540 0.80540 1.90759 1.58695 1.44901 1.51373 1.43741 1.35695 1.05398 1.45591 1.19706 0.94715 0.81247 0.99887 0.92931 0.99999 1.00102 0.87527 0.87493 0.89350 0.87253 0.86193 0.88897 0.87617 0.90473 0.86346 0.86326 0.75007 0.90118 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.29 21.44 0.28 -58.59 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.38 3.95 29.85 0.12 -4.26 16 11 C 0.51 18.76 7.64 87.66 0.67 19.43 16 12 O -0.59 -27.77 15.42 -3.02 -0.05 -27.82 16 13 N -0.61 -15.49 3.07 -834.49 -2.56 -18.05 16 14 C 0.11 1.70 6.30 86.06 0.54 2.25 16 15 C -0.10 -1.16 5.91 29.21 0.17 -0.99 16 16 C 0.12 1.78 6.53 40.83 0.27 2.04 16 17 C -0.19 -3.26 5.79 -16.49 -0.10 -3.35 16 18 C -0.07 -0.97 5.96 30.09 0.18 -0.79 16 19 C -0.13 -1.66 6.21 29.87 0.19 -1.48 16 20 C 0.52 9.72 7.75 87.78 0.68 10.40 16 21 O -0.58 -15.47 17.94 -3.05 -0.05 -15.52 16 22 N -0.66 -10.10 5.28 -299.41 -1.58 -11.68 16 23 C 0.17 3.78 5.95 85.78 0.51 4.29 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 26 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 27 H 0.11 3.43 7.53 -2.39 -0.02 3.41 16 28 H 0.11 3.45 7.97 -2.39 -0.02 3.43 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.66 5.74 -2.39 -0.01 1.64 16 31 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 5.24 8.78 -92.71 -0.81 4.43 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.04 7.22 -2.39 -0.02 2.03 16 Total: -1.00 -80.94 321.16 2.37 -78.57 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.25 Total: 7.44 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.05 Total: 0.35 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.86 Total: -88.32 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.10 Total: -43.34 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -80.94 2.37 -78.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347816856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.110 kcal (2) G-P(sol) polarization free energy of solvation -80.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds