Wall clock time and date at job start Mon Mar 30 2020 23:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46636 * 2 1 4 4 C 1.52999 * 109.47169 * 240.00478 * 2 1 3 5 5 C 1.50702 * 109.47526 * 64.99359 * 4 2 1 6 6 O 1.20824 * 119.99375 * 0.02562 * 5 4 2 7 7 O 1.34222 * 120.00243 * 180.02562 * 5 4 2 8 8 C 1.45199 * 117.00263 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.46944 * 330.00037 * 8 7 5 10 10 C 1.50699 * 109.47302 * 210.00266 * 8 7 5 11 11 H 1.08003 * 119.99608 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00063 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99918 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00001 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47266 * 89.99680 * 14 12 10 16 16 H 1.48500 * 109.47076 * 209.99259 * 14 12 10 17 17 H 1.48500 * 109.46897 * 329.99334 * 14 12 10 18 18 C 1.53000 * 109.47219 * 89.99933 * 8 7 5 19 19 C 1.53003 * 117.49670 * 8.74600 * 18 8 7 20 20 C 1.53010 * 117.49677 * 300.08672 * 18 8 7 21 21 C 1.50697 * 109.47363 * 119.99716 * 2 1 3 22 22 C 1.34515 * 125.79159 * 239.99820 * 21 2 1 23 23 C 1.41385 * 106.84000 * 180.02562 * 22 21 2 24 24 C 1.34507 * 106.84104 * 0.02562 * 23 22 21 25 25 O 1.34300 * 108.42410 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47603 * 59.99872 * 1 2 3 27 27 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46947 * 299.99383 * 1 2 3 29 29 H 1.08995 * 109.47129 * 185.00055 * 4 2 1 30 30 H 1.09001 * 109.46658 * 304.99693 * 4 2 1 31 31 H 0.97006 * 119.99767 * 180.02562 * 13 12 10 32 32 H 1.08993 * 115.55335 * 154.42030 * 18 8 7 33 33 H 1.08996 * 117.50198 * 0.02562 * 19 18 8 34 34 H 1.08997 * 117.49241 * 145.02380 * 19 18 8 35 35 H 1.08991 * 117.49677 * 214.97972 * 20 18 8 36 36 H 1.09004 * 117.49409 * 0.02562 * 20 18 8 37 37 H 1.08001 * 126.57671 * 0.29417 * 22 21 2 38 38 H 1.08003 * 126.57418 * 180.02562 * 23 22 21 39 39 H 1.08001 * 125.78847 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0139 1.0835 -2.3636 7 8 1.9829 -0.3899 -3.6952 8 6 1.5658 0.4110 -4.8322 9 1 0.6376 0.9290 -4.5907 10 6 1.3459 -0.4846 -6.0240 11 1 1.5042 -1.5493 -5.9359 12 6 0.9435 0.0553 -7.2272 13 7 0.7512 1.3519 -7.3345 14 14 0.6716 -1.0548 -8.7047 15 1 -0.7396 -1.5168 -8.7237 16 1 0.9623 -0.3008 -9.9506 17 1 1.5759 -2.2293 -8.6145 18 6 2.6524 1.4374 -5.1591 19 6 3.9888 1.3094 -4.4252 20 6 3.0247 2.4437 -4.0683 21 6 2.0324 -0.7103 1.2305 22 6 2.8090 -0.1719 2.1877 23 6 3.0388 -1.1850 3.1467 24 6 2.3894 -2.2821 2.7179 25 8 1.7814 -1.9887 1.5569 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.1262 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 0.4678 1.7317 -8.1810 32 1 2.6767 1.7833 -6.1924 33 1 4.0941 0.4938 -3.7098 34 1 4.8923 1.5715 -4.9757 35 1 3.2944 3.4514 -4.3841 36 1 2.4958 2.3742 -3.1177 37 1 3.1815 0.8414 2.2199 38 1 3.6237 -1.0951 4.0502 39 1 2.3609 -3.2367 3.2222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350303168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:11 Heat of formation + Delta-G solvation = -56.020483 kcal Electronic energy + Delta-G solvation = -21745.490707 eV Core-core repulsion = 18427.724473 eV Total energy + Delta-G solvation = -3317.766234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65351 -39.90767 -36.93019 -35.10653 -34.56022 -32.99114 -32.81861 -29.24998 -28.31325 -27.32638 -23.65944 -22.92903 -21.83538 -21.47716 -20.73535 -19.75968 -18.93330 -17.50479 -16.91228 -16.52209 -16.12760 -15.99299 -15.31830 -14.60528 -14.54524 -14.25019 -13.85083 -13.16451 -12.89513 -12.80736 -12.78795 -12.63549 -12.23599 -11.65509 -11.51931 -11.25475 -11.18353 -11.08929 -10.98340 -10.93689 -10.55071 -10.30485 -10.08413 -9.99661 -9.63764 -9.49432 -9.10457 -8.54461 -8.52838 -8.44818 -6.19941 -4.27017 1.66261 2.53606 2.92016 2.93673 3.24117 3.30010 3.33551 3.61962 4.31534 4.63369 4.75095 4.91779 4.93757 4.96937 5.08369 5.12853 5.35724 5.66859 5.70399 5.71336 5.72735 5.83957 5.84909 5.95492 6.04928 6.08663 6.13392 6.14900 6.41324 6.42011 6.45505 6.68184 6.89804 7.00048 7.08574 7.18716 7.56031 7.59170 7.83700 8.10864 8.59665 8.86357 9.37643 10.87169 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.003997 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.274770 B = 7004.066109 C = 7391.481804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.004 3.996 3 H 0.109 0.891 4 C -0.115 4.115 5 C 0.455 3.545 6 O -0.514 6.514 7 O -0.351 6.351 8 C 0.248 3.752 9 H 0.053 0.947 10 C -0.519 4.519 11 H 0.070 0.930 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.909 3.091 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.116 4.116 19 C -0.195 4.195 20 C -0.210 4.210 21 C 0.004 3.996 22 C -0.214 4.214 23 C -0.214 4.214 24 C -0.048 4.048 25 O -0.172 6.172 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.266 0.734 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -3.987 16.366 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.014 4.014 3 H 0.127 0.873 4 C -0.153 4.153 5 C 0.298 3.702 6 O -0.405 6.405 7 O -0.267 6.267 8 C 0.195 3.805 9 H 0.071 0.929 10 C -0.557 4.557 11 H 0.088 0.912 12 C -0.138 4.138 13 N -0.522 5.522 14 Si 0.736 3.264 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.135 4.135 19 C -0.232 4.232 20 C -0.247 4.247 21 C -0.046 4.046 22 C -0.233 4.233 23 C -0.233 4.233 24 C -0.115 4.115 25 O -0.068 6.068 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.345 -3.733 16.021 16.786 hybrid contribution 0.142 -0.245 -0.560 0.628 sum 3.488 -3.978 15.460 16.340 Atomic orbital electron populations 1.22007 0.92871 1.02511 1.03866 1.19590 0.97423 0.98043 0.86388 0.87271 1.21423 1.03712 1.00471 0.89695 1.23177 0.76707 0.84097 0.86213 1.90555 1.37840 1.24646 1.87447 1.86497 1.71228 1.53863 1.15137 1.20144 0.92768 0.88179 0.79366 0.92923 1.20958 1.46794 0.94360 0.93555 0.91195 1.24898 0.94830 0.95408 0.98708 1.69981 1.45491 1.10494 1.26279 0.86313 0.78703 0.80278 0.81101 1.20391 1.20969 1.19559 1.23024 0.94445 0.97828 0.98168 1.22801 0.94541 1.00712 1.05145 1.23155 1.05028 0.94259 1.02239 1.22479 1.00864 0.82465 0.98780 1.21619 1.04256 1.01359 0.96030 1.21812 1.05579 0.93660 1.02296 1.24004 0.99464 1.00858 0.87215 1.84022 1.59326 1.28144 1.35294 0.89309 0.92554 0.92445 0.88019 0.87740 0.92407 0.85310 0.89822 0.90458 0.90564 0.88766 0.83485 0.83631 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.92 37.16 0.33 -1.76 16 2 C 0.00 0.05 2.44 -91.77 -0.22 -0.17 16 3 H 0.11 1.44 7.91 -51.93 -0.41 1.03 16 4 C -0.12 -1.67 5.27 -27.88 -0.15 -1.82 16 5 C 0.45 8.84 6.62 36.01 0.24 9.08 16 6 O -0.51 -10.90 11.02 -18.75 -0.21 -11.11 16 7 O -0.35 -8.01 8.38 -39.24 -0.33 -8.34 16 8 C 0.25 6.43 2.41 -27.88 -0.07 6.36 16 9 H 0.05 1.52 7.16 -51.93 -0.37 1.15 16 10 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 11 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 12 C 0.06 1.74 5.20 -17.82 -0.09 1.64 16 13 N -0.89 -24.70 11.59 55.43 0.64 -24.06 16 14 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C -0.12 -2.83 5.27 -90.61 -0.48 -3.31 16 19 C -0.19 -4.05 9.80 -26.69 -0.26 -4.32 16 20 C -0.21 -4.49 9.85 -26.68 -0.26 -4.76 16 21 C 0.00 0.06 5.83 -35.63 -0.21 -0.15 16 22 C -0.21 -2.44 10.78 -39.70 -0.43 -2.87 16 23 C -0.21 -2.15 10.91 -39.70 -0.43 -2.58 16 24 C -0.05 -0.47 12.09 29.41 0.36 -0.11 16 25 O -0.17 -2.13 10.65 5.71 0.06 -2.07 16 26 H 0.09 1.40 5.96 -51.93 -0.31 1.09 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.13 3.44 6.46 -51.93 -0.34 3.11 16 33 H 0.08 1.69 6.91 -51.93 -0.36 1.33 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.09 2.05 5.37 -51.93 -0.28 1.77 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -29.77 325.70 -7.34 -37.12 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.41 Total: 7.11 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.98 Total: -19.34 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.64 Total: -24.06 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.47 Total: -21.52 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.77 -7.34 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350303168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.904 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds