Wall clock time and date at job start Mon Mar 30 2020 23:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46636 * 2 1 4 4 C 1.52999 * 109.47169 * 240.00478 * 2 1 3 5 5 C 1.50702 * 109.47526 * 64.99359 * 4 2 1 6 6 O 1.20824 * 119.99375 * 0.02562 * 5 4 2 7 7 O 1.34222 * 120.00243 * 180.02562 * 5 4 2 8 8 C 1.45199 * 117.00263 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.46944 * 330.00037 * 8 7 5 10 10 C 1.50699 * 109.47302 * 210.00266 * 8 7 5 11 11 H 1.08003 * 119.99608 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00063 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99918 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00001 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47266 * 89.99680 * 14 12 10 16 16 H 1.48500 * 109.47076 * 209.99259 * 14 12 10 17 17 H 1.48500 * 109.46897 * 329.99334 * 14 12 10 18 18 C 1.53000 * 109.47219 * 89.99933 * 8 7 5 19 19 C 1.53003 * 117.49670 * 8.74600 * 18 8 7 20 20 C 1.53010 * 117.49677 * 300.08672 * 18 8 7 21 21 C 1.50697 * 109.47363 * 119.99716 * 2 1 3 22 22 C 1.34515 * 125.79159 * 239.99820 * 21 2 1 23 23 C 1.41385 * 106.84000 * 180.02562 * 22 21 2 24 24 C 1.34507 * 106.84104 * 0.02562 * 23 22 21 25 25 O 1.34300 * 108.42410 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47603 * 59.99872 * 1 2 3 27 27 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46947 * 299.99383 * 1 2 3 29 29 H 1.08995 * 109.47129 * 185.00055 * 4 2 1 30 30 H 1.09001 * 109.46658 * 304.99693 * 4 2 1 31 31 H 0.97006 * 119.99767 * 180.02562 * 13 12 10 32 32 H 1.08993 * 115.55335 * 154.42030 * 18 8 7 33 33 H 1.08996 * 117.50198 * 0.02562 * 19 18 8 34 34 H 1.08997 * 117.49241 * 145.02380 * 19 18 8 35 35 H 1.08991 * 117.49677 * 214.97972 * 20 18 8 36 36 H 1.09004 * 117.49409 * 0.02562 * 20 18 8 37 37 H 1.08001 * 126.57671 * 0.29417 * 22 21 2 38 38 H 1.08003 * 126.57418 * 180.02562 * 23 22 21 39 39 H 1.08001 * 125.78847 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0139 1.0835 -2.3636 7 8 1.9829 -0.3899 -3.6952 8 6 1.5658 0.4110 -4.8322 9 1 0.6376 0.9290 -4.5907 10 6 1.3459 -0.4846 -6.0240 11 1 1.5042 -1.5493 -5.9359 12 6 0.9435 0.0553 -7.2272 13 7 0.7512 1.3519 -7.3345 14 14 0.6716 -1.0548 -8.7047 15 1 -0.7396 -1.5168 -8.7237 16 1 0.9623 -0.3008 -9.9506 17 1 1.5759 -2.2293 -8.6145 18 6 2.6524 1.4374 -5.1591 19 6 3.9888 1.3094 -4.4252 20 6 3.0247 2.4437 -4.0683 21 6 2.0324 -0.7103 1.2305 22 6 2.8090 -0.1719 2.1877 23 6 3.0388 -1.1850 3.1467 24 6 2.3894 -2.2821 2.7179 25 8 1.7814 -1.9887 1.5569 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.1262 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 0.4678 1.7317 -8.1810 32 1 2.6767 1.7833 -6.1924 33 1 4.0941 0.4938 -3.7098 34 1 4.8923 1.5715 -4.9757 35 1 3.2944 3.4514 -4.3841 36 1 2.4958 2.3742 -3.1177 37 1 3.1815 0.8414 2.2199 38 1 3.6237 -1.0951 4.0502 39 1 2.3609 -3.2367 3.2222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350303168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:11 Heat of formation + Delta-G solvation = -70.858966 kcal Electronic energy + Delta-G solvation = -21746.134152 eV Core-core repulsion = 18427.724473 eV Total energy + Delta-G solvation = -3318.409679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48547 -41.56327 -38.58854 -36.64073 -36.01490 -34.86598 -33.80918 -30.57266 -29.62175 -28.81360 -25.46018 -24.21513 -23.18486 -22.67613 -22.14430 -20.92921 -20.59728 -18.86393 -18.65039 -17.81557 -17.72378 -17.15824 -16.87008 -16.29201 -15.90042 -15.45021 -15.34887 -14.42278 -14.36050 -14.17714 -13.77692 -13.68282 -13.45966 -13.31551 -13.22478 -12.94644 -12.79634 -12.49618 -12.40714 -12.28171 -12.20142 -12.02607 -11.93127 -11.32620 -11.29126 -10.95508 -10.80276 -10.46255 -10.40423 -9.36110 -8.26002 -6.42084 0.82565 1.36522 1.42295 1.43594 1.55004 1.73575 1.98908 2.19116 2.43892 3.02125 3.16872 3.61991 3.66720 3.92213 4.08829 4.09972 4.18620 4.27977 4.31211 4.32208 4.37048 4.58291 4.61258 4.77643 4.81712 4.92593 4.95941 5.00845 5.05648 5.11268 5.19059 5.26475 5.30982 5.35177 5.54202 5.58521 5.65724 5.94457 6.15196 6.26608 6.63047 7.01834 7.28905 8.81120 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.003997 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.274770 B = 7004.066109 C = 7391.481804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.012 3.988 3 H 0.107 0.893 4 C -0.103 4.103 5 C 0.449 3.551 6 O -0.534 6.534 7 O -0.361 6.361 8 C 0.255 3.745 9 H 0.009 0.991 10 C -0.546 4.546 11 H 0.065 0.935 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 0.977 3.023 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.198 4.198 21 C -0.018 4.018 22 C -0.215 4.215 23 C -0.226 4.226 24 C -0.042 4.042 25 O -0.189 6.189 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.269 0.731 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -5.224 17.723 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.007 4.007 3 H 0.125 0.875 4 C -0.141 4.141 5 C 0.294 3.706 6 O -0.425 6.425 7 O -0.277 6.277 8 C 0.202 3.798 9 H 0.027 0.973 10 C -0.583 4.583 11 H 0.084 0.916 12 C -0.181 4.181 13 N -0.550 5.550 14 Si 0.800 3.200 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.167 4.167 19 C -0.205 4.205 20 C -0.235 4.235 21 C -0.068 4.068 22 C -0.234 4.234 23 C -0.245 4.245 24 C -0.109 4.109 25 O -0.086 6.086 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.704 -4.966 17.403 18.699 hybrid contribution -0.300 0.147 -0.853 0.916 sum 4.404 -4.818 16.550 17.791 Atomic orbital electron populations 1.21934 0.93481 1.02458 1.02995 1.19430 0.96891 0.98007 0.86354 0.87510 1.21514 1.04983 1.00134 0.87423 1.24152 0.75930 0.84243 0.86252 1.90549 1.38599 1.25863 1.87528 1.86479 1.71644 1.53762 1.15823 1.19700 0.91697 0.88301 0.80086 0.97349 1.21258 1.47783 0.94442 0.94820 0.91629 1.25765 0.94119 0.96796 1.01390 1.70106 1.45693 1.12129 1.27040 0.85276 0.78769 0.78517 0.77426 1.19832 1.20190 1.18762 1.22723 0.96759 0.99607 0.97655 1.22879 0.93652 1.00163 1.03788 1.23148 1.04635 0.94991 1.00707 1.22207 1.02551 0.83025 0.99010 1.21921 1.03345 1.02182 0.95948 1.22159 1.06104 0.93250 1.02964 1.24815 0.97851 1.02229 0.86032 1.84007 1.60004 1.28030 1.36514 0.92156 0.92187 0.91207 0.86004 0.86624 0.92208 0.87987 0.89061 0.88108 0.88963 0.89262 0.82535 0.81309 0.74720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.92 71.98 0.64 -3.44 16 2 C 0.01 0.30 2.44 -11.54 -0.03 0.27 16 3 H 0.11 2.77 7.91 -2.38 -0.02 2.75 16 4 C -0.10 -2.91 5.27 29.85 0.16 -2.75 16 5 C 0.45 17.72 6.62 71.24 0.47 18.20 16 6 O -0.53 -23.45 11.02 21.97 0.24 -23.21 16 7 O -0.36 -16.77 8.38 -51.34 -0.43 -17.20 16 8 C 0.26 13.76 2.41 29.85 0.07 13.84 16 9 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 10 C -0.55 -30.87 8.90 25.60 0.23 -30.65 16 11 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.02 1.07 5.20 84.65 0.44 1.51 16 13 N -0.91 -52.36 11.59 21.44 0.25 -52.11 16 14 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 C -0.15 -7.41 5.27 -10.79 -0.06 -7.47 16 19 C -0.17 -6.79 9.80 30.62 0.30 -6.49 16 20 C -0.20 -8.43 9.85 30.63 0.30 -8.13 16 21 C -0.02 -0.42 5.83 24.83 0.14 -0.28 16 22 C -0.21 -4.46 10.78 22.19 0.24 -4.22 16 23 C -0.23 -3.86 10.91 22.19 0.24 -3.62 16 24 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 25 O -0.19 -4.29 10.65 -2.50 -0.03 -4.31 16 26 H 0.06 1.97 5.96 -2.39 -0.01 1.96 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.10 5.64 6.46 -2.39 -0.02 5.62 16 33 H 0.09 3.54 6.91 -2.39 -0.02 3.52 16 34 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.09 3.89 5.37 -2.39 -0.01 3.88 16 37 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.24 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -66.19 325.70 7.07 -59.12 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.05 Total: 25.84 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 3.96 Total: -33.11 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.25 Total: -52.11 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.21 Total: -44.72 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.19 7.07 -59.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350303168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.740 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds