Wall clock time and date at job start Tue Mar 31 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47527 * 270.00554 * 3 2 1 5 5 H 1.48499 * 109.46839 * 30.00634 * 3 2 1 6 6 H 1.48503 * 109.47038 * 150.00092 * 3 2 1 7 7 C 1.37875 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00552 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47458 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47047 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.46937 * 179.97438 * 11 10 9 13 13 O 1.21290 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00055 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00301 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47309 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47086 * 60.00050 * 16 15 14 18 18 O 1.42904 * 109.47076 * 300.00105 * 16 15 14 19 19 C 1.50703 * 109.47050 * 180.02562 * 16 15 14 20 20 C 1.38651 * 120.78915 * 84.97760 * 19 16 15 21 21 C 1.38203 * 119.16168 * 179.97438 * 20 19 16 22 22 N 1.31874 * 120.76322 * 0.02562 * 21 20 19 23 23 C 1.31870 * 121.72652 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.76299 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00017 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.46364 * 60.00681 * 9 7 2 27 27 H 1.08999 * 109.47227 * 300.00832 * 9 7 2 28 28 H 1.08998 * 109.47057 * 60.00453 * 10 9 7 29 29 H 1.09000 * 109.46832 * 300.00308 * 10 9 7 30 30 H 1.08998 * 109.47124 * 60.00124 * 11 10 9 31 31 H 1.08999 * 109.47130 * 300.00218 * 11 10 9 32 32 H 0.96995 * 120.00146 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.47006 * 60.00107 * 15 14 12 34 34 H 1.08999 * 109.47250 * 300.00200 * 15 14 12 35 35 H 0.96703 * 114.00002 * 300.00145 * 18 16 15 36 36 H 1.08002 * 120.42195 * 0.04071 * 20 19 16 37 37 H 1.07996 * 119.61854 * 180.30069 * 21 20 19 38 38 H 1.08001 * 119.61693 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.41815 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4592 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0013 14 7 2.0099 -7.4032 -0.0019 15 6 2.9619 -8.5168 -0.0020 16 6 2.1968 -9.8418 -0.0027 17 1 1.5705 -9.8992 -0.8930 18 8 1.3748 -9.9179 1.1637 19 6 3.1761 -10.9873 -0.0022 20 6 3.7156 -11.4592 1.1847 21 6 4.6103 -12.5118 1.1462 22 7 4.9518 -13.0652 -0.0011 23 6 4.4595 -12.6419 -1.1489 24 6 3.5597 -11.5937 -1.1885 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8905 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6045 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8537 -5.0446 -0.8914 31 1 0.8530 -5.0451 0.8885 32 1 1.0563 -7.5805 -0.0020 33 1 3.5885 -8.4592 0.8880 34 1 3.5886 -8.4591 -0.8919 35 1 1.8666 -9.8728 1.9951 36 1 3.4394 -11.0105 2.1275 37 1 5.0314 -12.8884 2.0666 38 1 4.7631 -13.1198 -2.0686 39 1 3.1598 -11.2517 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354091848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:55 Heat of formation + Delta-G solvation = -73.000570 kcal Electronic energy + Delta-G solvation = -20200.419012 eV Core-core repulsion = 16914.209217 eV Total energy + Delta-G solvation = -3286.209795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86790 -39.55938 -37.93050 -34.49565 -34.11671 -33.22915 -32.03367 -31.66441 -29.38543 -27.58957 -24.83749 -23.95527 -23.40024 -22.02429 -20.68271 -19.77795 -18.28175 -17.18714 -17.12432 -16.22781 -16.13070 -15.89007 -15.78329 -15.28718 -14.96661 -14.48238 -14.36072 -14.09634 -13.94180 -13.57257 -13.41333 -12.54809 -12.26779 -12.22701 -11.95145 -11.81212 -11.33414 -11.01171 -10.80532 -10.61136 -10.53506 -10.11076 -9.94371 -9.71549 -9.68347 -9.63141 -9.27295 -9.12575 -9.01872 -8.31885 -5.97532 -3.98912 0.65919 0.68814 2.87416 3.07326 3.34826 3.35253 3.40630 3.45472 3.81057 4.00545 4.04538 4.23727 4.34559 4.49476 4.55971 4.66463 4.73251 5.10207 5.11242 5.26924 5.32371 5.38525 5.42203 5.48424 5.71061 5.71774 5.78880 6.19646 6.23942 6.36006 6.72246 6.92745 6.98877 7.15944 7.50797 7.54103 7.71112 7.83825 8.03146 8.39904 8.47215 9.08160 9.64992 11.13959 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047556 B = 0.002356 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.641047 B =11883.150315 C =12104.497750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.513 3.487 13 O -0.539 6.539 14 N -0.736 5.736 15 C 0.094 3.906 16 C 0.137 3.863 17 H 0.121 0.879 18 O -0.547 6.547 19 C -0.071 4.071 20 C -0.163 4.163 21 C 0.103 3.897 22 N -0.485 5.485 23 C 0.102 3.898 24 C -0.161 4.161 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.379 0.621 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -26.851 0.319 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.301 3.699 13 O -0.414 6.414 14 N -0.390 5.390 15 C -0.031 4.031 16 C 0.078 3.922 17 H 0.138 0.862 18 O -0.353 6.353 19 C -0.080 4.080 20 C -0.183 4.183 21 C -0.054 4.054 22 N -0.194 5.194 23 C -0.055 4.055 24 C -0.181 4.181 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.240 0.760 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.335 -27.295 -0.115 27.637 hybrid contribution -0.163 1.519 0.354 1.568 sum 4.173 -25.776 0.239 26.112 Atomic orbital electron populations 1.69962 1.06029 1.26537 1.51196 1.25025 0.94867 0.99262 0.95407 0.86587 0.79889 0.83411 0.78097 1.20680 1.21262 1.19852 1.21270 0.93179 0.91019 1.50144 0.92598 1.19136 0.93969 0.91454 0.97147 1.21450 0.98641 0.91555 1.01661 1.21844 0.98100 0.93936 1.03876 1.21322 0.90418 0.83634 0.74529 1.90686 1.17392 1.84729 1.48638 1.46008 1.10161 1.05313 1.77552 1.21888 0.92483 0.85256 1.03478 1.21089 0.90596 0.89943 0.90612 0.86173 1.86656 1.36641 1.96207 1.15791 1.20852 0.96488 0.96624 0.94014 1.21914 0.98766 0.98961 0.98650 1.22783 0.93799 0.92346 0.96436 1.67704 1.24048 1.28963 0.98727 1.22818 0.92792 0.93477 0.96407 1.22041 0.99632 0.97710 0.98684 0.93068 0.96593 0.96579 0.92727 0.92735 0.89289 0.89240 0.76045 0.91156 0.90506 0.77254 0.84718 0.82457 0.82424 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.05 4.44 -26.73 -0.12 -2.16 16 11 C -0.14 -2.24 5.70 -27.88 -0.16 -2.40 16 12 C 0.51 7.99 7.83 -10.99 -0.09 7.90 16 13 O -0.54 -10.60 15.98 5.55 0.09 -10.52 16 14 N -0.74 -8.05 5.45 -60.30 -0.33 -8.38 16 15 C 0.09 0.87 5.32 -4.04 -0.02 0.85 16 16 C 0.14 0.93 3.33 -27.88 -0.09 0.84 16 17 H 0.12 0.73 8.07 -51.93 -0.42 0.31 16 18 O -0.55 -3.90 12.89 -35.23 -0.45 -4.35 16 19 C -0.07 -0.50 5.03 -104.32 -0.53 -1.02 16 20 C -0.16 -1.07 9.41 -39.44 -0.37 -1.44 16 21 C 0.10 0.76 11.18 -17.55 -0.20 0.56 16 22 N -0.49 -4.40 10.36 -13.25 -0.14 -4.53 16 23 C 0.10 0.75 11.18 -17.55 -0.20 0.56 16 24 C -0.16 -1.08 9.80 -39.44 -0.39 -1.46 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.40 3.56 8.35 -40.82 -0.34 3.22 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.38 1.71 7.48 45.56 0.34 2.05 16 36 H 0.14 0.55 6.73 -52.49 -0.35 0.20 16 37 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -35.87 337.51 -7.69 -43.56 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.96 Total: -0.30 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.70 Total: -11.22 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.27 Total: -39.29 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.37 Total: -14.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.87 -7.69 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354091848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.438 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds